mRNA_P-wetherbeei_contig16852.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16852.1.1
Unique NamemRNA_P-wetherbeei_contig16852.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16852.1.1 vs. uniprot
Match: A0A835Z0L6_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.590e-17
Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 1 
Query:   31 PKSFGGGFVI*DRVPSVGPKSLFKMAQEDPEIRLEALQKGPGGPVRAIKARVRTIVSSKKVRLRELFGAFD--IHNNKKISQDCFLRALTVAGIIIPAL--GPS----------ALLAQRYRAVGSTGRDDVDYSRFCAQIEKRPTSGKTTDADAAXXXXXXX--------EFGPDKLTFSAADAGSLRVLLGRLRHMTQTSGLVLRATFRDFDRRNNGCISPEDFVRSL 654
            PK    GF++        P   F +   D       + KGP  PV+ +K R+R I + +++RL+++F A++   HN K +++  F RAL  AG+ +P    GP+          ALL +RY   G T  D V++ RF  QI+K  T  K  + D                  +G      SA + G L  LL  +  M  T G+   A FRDFD  N G ++P  F+R +
Sbjct:   10 PKDQRAGFIL-----PAPPTDEFLLRDLDVG---SVMTKGPSSPVKPVKDRLRGICARRRLRLKDVFQAYETQFHNQKVVTKSQFKRALAQAGLTVPTHDGGPTSNGLLTTKDLALLCKRYEEPGRT--DLVNWGRFADQIDKAFTI-KHLEGDPLREVRVRPPEPEGGACRYGLQSEELSAEELGELEALLSSISRMVTTQGINASAAFRDFDTTNCGHVTPPRFLRQV 228
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BLAST of mRNA_P-wetherbeei_contig16852.1.1 vs. uniprot
Match: A0A7S2CG71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG71_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.210e-6
Identity = 45/172 (26.16%), Postives = 74/172 (43.02%), Query Frame = 1 
Query:  181 RVRTIVSSKKVRLRELFGAFDIHNNKKISQDCFLRALT--VAGIIIPALGPSALLAQRYRAVGSTGRDDVDYSRFCAQ---------IEKRPTSGKTTDADAAXXXXXXXEFGPDKLTFSAADAGSLRVLLGRLRHMTQTSGLVLRATFRDFDRRNNGCISPEDFVRSLSHI 663
            ++R IV S+ VRL + F  FD    +KI    F RAL     G++ P         + Y AV       ++Y   C +         +E+ P                    G    + +  +   +  +L RL HM  TSG +++  F DFD+ ++GC++ ++F+RSL  I
Sbjct:   14 KLRGIVKSRNVRLDDFFKEFDRRKTRKIDACNFDRALNNGTQGLLTP---DEVETLKAYFAVPGDALL-INYMELCDEANSVSEIKGLERHPKKNVVLKMQGTGQS----RLGLANPSLTEEELSVVEDILDRLTHMVDTSGTIVKELFVDFDKNHDGCVTKDEFLRSLKTI 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16852.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z0L6_9STRA2.590e-1730.43EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2CG71_9STRA1.210e-626.16Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16852contigP-wetherbeei_contig16852:230..1092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI31599
Model size663
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-16
EggNOG OGs28JGH@1|root,2QRVM@2759|Eukaryota,3QA1U@4776|Peronosporales
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_005160.1
DescriptionEF-hand, calcium binding motif
Cds size561
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.7083578-UTR-P-wetherbeei_contig16852:229..3311683186099.7083578-UTR-P-wetherbeei_contig16852:229..331Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16852 230..331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.7222676-CDS-P-wetherbeei_contig16852:331..5621683186099.7222676-CDS-P-wetherbeei_contig16852:331..562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16852 332..562 +
1683186099.7298589-CDS-P-wetherbeei_contig16852:762..10921683186099.7298589-CDS-P-wetherbeei_contig16852:762..1092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16852 763..1092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16852.1.1prot_P-wetherbeei_contig16852.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16852 332..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16852.1.1

>prot_P-wetherbeei_contig16852.1.1 ID=prot_P-wetherbeei_contig16852.1.1|Name=mRNA_P-wetherbeei_contig16852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MAQEDPEIRLEALQKGPGGPVRAIKARVRTIVSSKKVRLRELFGAFDIHN
NKKISQDCFLRALTVAGIIIPALGPSALLAQRYRAVGSTGRDDVDYSRFC
AQIEKRPTSGKTTDADAAPAPPPPPEFGPDKLTFSAADAGSLRVLLGRLR
HMTQTSGLVLRATFRDFDRRNNGCISPEDFVRSLSHI
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mRNA from alignment at P-wetherbeei_contig16852:230..1092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16852.1.1 ID=mRNA_P-wetherbeei_contig16852.1.1|Name=mRNA_P-wetherbeei_contig16852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=863bp|location=Sequence derived from alignment at P-wetherbeei_contig16852:230..1092+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGGACCGTGGGTGCGAGAGCAGCGAACCGAAGAGTTTTGGGGGGGG
ATTCGTGATATAGGATCGAGTTCCTTCTGTTGGTCCCAAATCGCTTTTCA
AAATGGCGCAAGAAGACCCAGAAATACGCCTCGAAGCCCTGCAGAAGGGT
CCAGGTGGTCCTGTTCGCGCTATCAAGGCTCGGGTTCGAACAATTGTCTC
CAGCAAGAAAGTGCGCCTGCGCGAGCTCTTCGGTGCCTTCGACATTCACA
ACAACAAGAAAATAAGCCAGGATTGCTTCCTTCGCGCCCTAACCGTCGCC
GGCATCATCATTCCCGCTCTGGGTCCTTCTGCGGTAAGCTTGAGTTCCGC
AGCACCCGTCTCGTACCCGTAATGAAGCAAACTGGTACACCAAGGAGGCC
GCCTCATGAGCTTAAGATCTTCAAACCTCTATTTCTGCCTGTGCTCGAAA
GCTATCGAGCTCTCAAACGTTTTCCGATTCCGCGAGCCTCCCTTATGCAG
CTCACCGGAGAGCTGACGCTGCACGAGGGAAAGCTGCTGGCGCAGCGGTA
CCGCGCCGTGGGCAGCACTGGCCGGGACGACGTTGACTACTCGCGCTTTT
GCGCGCAGATAGAGAAGCGGCCGACCTCGGGCAAAACCACCGATGCTGAC
GCCGCGCCGGCGCCGCCGCCGCCGCCGGAATTCGGCCCCGACAAACTGAC
CTTCTCGGCGGCCGATGCTGGCAGCCTTCGCGTCCTGCTCGGCCGCCTCC
GGCACATGACGCAGACGTCGGGGCTCGTGCTCCGAGCTACTTTTCGAGAC
TTCGACCGCCGCAACAACGGGTGCATCTCGCCTGAAGACTTTGTGCGGTC
GCTCAGCCACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16852:230..1092+

>mRNA_P-wetherbeei_contig16852.1.1 ID=mRNA_P-wetherbeei_contig16852.1.1|Name=mRNA_P-wetherbeei_contig16852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig16852:230..1092+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAAGAAGACCCAGAAATACGCCTCGAAGCCCTGCAGAAGGGTCC
AGGTGGTCCTGTTCGCGCTATCAAGGCTCGGGTTCGAACAATTGTCTCCA
GCAAGAAAGTGCGCCTGCGCGAGCTCTTCGGTGCCTTCGACATTCACAAC
AACAAGAAAATAAGCCAGGATTGCTTCCTTCGCGCCCTAACCGTCGCCGG
CATCATCATTCCCGCTCTGGGTCCTTCTGCGCTGCTGGCGCAGCGGTACC
GCGCCGTGGGCAGCACTGGCCGGGACGACGTTGACTACTCGCGCTTTTGC
GCGCAGATAGAGAAGCGGCCGACCTCGGGCAAAACCACCGATGCTGACGC
CGCGCCGGCGCCGCCGCCGCCGCCGGAATTCGGCCCCGACAAACTGACCT
TCTCGGCGGCCGATGCTGGCAGCCTTCGCGTCCTGCTCGGCCGCCTCCGG
CACATGACGCAGACGTCGGGGCTCGTGCTCCGAGCTACTTTTCGAGACTT
CGACCGCCGCAACAACGGGTGCATCTCGCCTGAAGACTTTGTGCGGTCGC
TCAGCCACATC
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