mRNA_P-wetherbeei_contig1685.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1685.3.1
Unique NamemRNA_P-wetherbeei_contig1685.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A351T2K5_9PROT (MarR family transcriptional regulator n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T2K5_9PROT)

HSP 1 Score: 204 bits (520), Expect = 1.270e-64
Identity = 105/169 (62.13%), Postives = 134/169 (79.29%), Query Frame = 1
Query:    1 MADINNLYTVH-PPIETGDSAELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAIRHG 504
            MADINN+       + + +S  LR+AIELLFFAYRD T D D IL ++G+GRAHHR+L+F+GAYPGI+VAQLL IL+ITKQSL RVL+QLV++ FVEQR GK DRR+RLL+LTPKG+ FE+QL++PQ+ R R AFAA+G DAVAGY  V+EHLI+  +R+ IL   + G
Sbjct:    1 MADINNVKDSEGQTLHSSESERLRRAIELLFFAYRDFTGDPDEILQQSGFGRAHHRVLHFIGAYPGISVAQLLEILKITKQSLARVLRQLVQEGFVEQRMGKRDRRKRLLYLTPKGRQFERQLAMPQRERFRAAFAAAGDDAVAGYFKVIEHLINAQDRQIILQNFKRG 169          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A2A4VTC9_9PROT (MarR family transcriptional regulator n=1 Tax=Kordiimonadales bacterium TaxID=2030814 RepID=A0A2A4VTC9_9PROT)

HSP 1 Score: 168 bits (426), Expect = 1.600e-50
Identity = 89/145 (61.38%), Postives = 110/145 (75.86%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            ELR+ IELL+FAYRD T D D ILA TG GRAHHR+LYFVG  PG  V+ LL +LRITKQSL RVL QLV   ++EQ+AG  DRRQRLL+LT KG AFEKQL   Q+ RV +A+  +GP+AVAG+  VL ++++E ER+ +L AI
Sbjct:   16 ELRRGIELLYFAYRDFTQDPDKILADTGLGRAHHRVLYFVGRSPGTTVSGLLKLLRITKQSLSRVLGQLVDDGYIEQQAGMTDRRQRLLYLTEKGDAFEKQLFSTQRERVAQAYKTAGPEAVAGFWEVLLNIVNETERETVLRAI 160          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A6L4AYD5_9BACT (MarR family transcriptional regulator n=1 Tax=Thermoanaerobaculia bacterium TaxID=2651171 RepID=A0A6L4AYD5_9BACT)

HSP 1 Score: 168 bits (426), Expect = 1.990e-50
Identity = 93/145 (64.14%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            ELR+ IELLF+AYRD T+D DAIL R G+GRAHHR+L+FVG  PGI +AQLL+ILRITKQSL RVL  L+   +VEQR G  DRRQR LFLT KGQA E++L   QQARV RA+  +G +AVAGY  VL  LIDE +R  IL  I
Sbjct:   17 ELRQGIELLFYAYRDFTADPDAILERYGFGRAHHRVLHFVGRNPGITIAQLLAILRITKQSLSRVLGVLLTDAYVEQRQGLRDRRQRQLFLTEKGQALEEELRQVQQARVARAYREAGAEAVAGYRQVLAGLIDEEDRDRILKTI 161          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A8J7MAB0_9RHOB (MarR family transcriptional regulator n=1 Tax=Thermohalobaculum xanthum TaxID=2753746 RepID=A0A8J7MAB0_9RHOB)

HSP 1 Score: 168 bits (425), Expect = 4.370e-50
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            +LR+ IELLFFAYRD TSD DA+LA  GYGRAHHR ++F+   PGI VA LL IL +TKQSL RVL+QL++ + V Q  G+ DRRQR L LTPKG+  E+ LS PQ+ R+RRAF+ +GPDAVAG+  VLE +IDE  R A+L  +
Sbjct:   34 QLRQGIELLFFAYRDFTSDPDAVLAERGYGRAHHRAIHFIKRRPGITVAGLLDILGVTKQSLNRVLRQLIEDDLVVQTTGQADRRQRHLNLTPKGEELERSLSAPQRERLRRAFSEAGPDAVAGFRKVLERMIDEGGRDAVLSLV 178          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: UPI001883C450 (MarR family transcriptional regulator n=1 Tax=Kordiimonas pumila TaxID=2161677 RepID=UPI001883C450)

HSP 1 Score: 164 bits (416), Expect = 5.270e-49
Identity = 85/145 (58.62%), Postives = 108/145 (74.48%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            ELR+ IELL+FAYRD T D D IL + G+GRAHHR+LYFVG  PG  V+ LLS+LRITKQSL RVL QLV   +++Q+ G  DRRQRLL LTPKG+ FEK+L   Q+ RV  A+  +GP+AVAG+  VL +++DE ER+ +L  I
Sbjct:   16 ELRRGIELLYFAYRDFTRDPDEILQKAGFGRAHHRVLYFVGRNPGTTVSGLLSLLRITKQSLSRVLGQLVDDGYIDQKTGATDRRQRLLHLTPKGEKFEKELFSTQRQRVAEAYKTAGPEAVAGFWEVLLNIVDEKEREQVLRQI 160          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A2D6T3V6_9PROT (MarR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T3V6_9PROT)

HSP 1 Score: 163 bits (413), Expect = 1.930e-48
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 1
Query:   52 DSAELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAIR 498
            D  E+R+ IELLF+AYRD TSD DAIL  +G+GRAHHR+++FVG  PGI VA+LL ILRITKQSL RVL QL+++ ++ QR G  DRRQRLL+LT +G   E+ L+ PQ  RV  A+  +GP+AVA Y  +L  LI+E++R+A+L + R
Sbjct:   20 DEEEIRQGIELLFYAYRDFTSDPDAILXGSGFGRAHHRVVHFVGRRPGITVAELLDILRITKQSLSRVLSQLIERGYIVQRKGTRDRRQRLLYLTDEGTELERSLASPQHKRVGDAYREAGPEAVAAYRKILLGLINESDREAVLKSFR 168          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A418W9Q3_9PROT (MarR family transcriptional regulator n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418W9Q3_9PROT)

HSP 1 Score: 163 bits (412), Expect = 2.420e-48
Identity = 89/145 (61.38%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            E+R+ IELLFFAYRD T DAD +LAR G GRAHHR+++FVG  PG+ V +LLSILRITKQSL RVL QL++++ V Q  G  DRRQRLL LT KG   E+QLS  Q+ARV RA+  +G +AVAG+  VL  LIDEA+R++IL A+
Sbjct:   19 EIRQGIELLFFAYRDFTLDADTVLARHGMGRAHHRVIHFVGRRPGMTVNELLSILRITKQSLSRVLSQLIEEDLVVQVQGTRDRRQRLLSLTAKGTELERQLSGLQRARVTRAYREAGAEAVAGFRKVLVGLIDEADRESILAAV 163          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: UPI001FF5B34B (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Kordiimonas sp. A6E486 TaxID=2872312 RepID=UPI001FF5B34B)

HSP 1 Score: 162 bits (409), Expect = 6.080e-48
Identity = 85/145 (58.62%), Postives = 110/145 (75.86%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            ELR+ IELL+FAYRD T D D ILA++G+GRAHHR+LYFVG  PG  V+ LL +LRITKQSL RVL QLV + +VEQ+ G+ DRRQRLL+LT KG+ FEK+L   Q+ RV  A+  +GP+AVAG+  VL +++DE +R  +L  I
Sbjct:   16 ELRRGIELLYFAYRDFTKDPDDILAQSGFGRAHHRVLYFVGRNPGTTVSGLLGLLRITKQSLSRVLGQLVDEGYVEQKPGEVDRRQRLLYLTDKGEDFEKKLFATQRNRVAEAYKKAGPEAVAGFWEVLLNIVDEDQRDTVLRQI 160          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A1Y5TVS2_9PROT (DNA-binding transcriptional repressor MarR n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TVS2_9PROT)

HSP 1 Score: 162 bits (409), Expect = 6.470e-48
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 1
Query:   61 ELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAI 495
            ELR+ IEL+FFAYR  TSD DAIL R  +GRAHHR+++FVG  PGI VA+LLSIL ITKQSL RVL  LV+Q F+EQR G  DRRQRLL LT KGQA E +L+ PQ+ RV RA+  +G +AV GY  VL  LID  +R+ IL  I
Sbjct:   17 ELRQGIELMFFAYRYFTSDPDAILKRYQFGRAHHRVVHFVGRNPGITVAELLSILSITKQSLSRVLSTLVEQGFIEQRPGTKDRRQRLLSLTEKGQALEDELASPQKGRVARAYREAGAEAVEGYRKVLLGLIDAEDREEILSRI 161          
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Match: A0A081BD46_9HYPH (MarR family transcriptional regulator n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BD46_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 9.120e-48
Identity = 85/157 (54.14%), Postives = 115/157 (73.25%), Query Frame = 1
Query:   34 PPIETGDSAELRKAIELLFFAYRDSTSDADAILARTGYGRAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAGKNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLEHLIDEAERKAILDAIRHG 504
            P     ++ EL +AIE LFFAYRD TSD D IL   G+GRAHHR+++FVG +PGI VA LL+ILRITKQSL RVLK+LV Q ++ Q+ G  DRRQRLL+L+ KG   E++L+ PQ+ RV +A AA+GP+A   + +VL HL++E +R+A+   I +G
Sbjct:   39 PARSPAETRELVEAIEWLFFAYRDFTSDPDEILHEYGFGRAHHRVIHFVGRHPGITVADLLNILRITKQSLSRVLKELVGQGYIVQKTGTKDRRQRLLYLSDKGMEMERRLAGPQRERVAKALAAAGPEAQKAWCAVLAHLVNEDDRRAVEALISNG 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1685.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T2K5_9PROT1.270e-6462.13MarR family transcriptional regulator n=2 Tax=Alph... [more]
A0A2A4VTC9_9PROT1.600e-5061.38MarR family transcriptional regulator n=1 Tax=Kord... [more]
A0A6L4AYD5_9BACT1.990e-5064.14MarR family transcriptional regulator n=1 Tax=Ther... [more]
A0A8J7MAB0_9RHOB4.370e-5060.00MarR family transcriptional regulator n=1 Tax=Ther... [more]
UPI001883C4505.270e-4958.62MarR family transcriptional regulator n=1 Tax=Kord... [more]
A0A2D6T3V6_9PROT1.930e-4856.38MarR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A418W9Q3_9PROT2.420e-4861.38MarR family transcriptional regulator n=1 Tax=Oleo... [more]
UPI001FF5B34B6.080e-4858.62MarR family winged helix-turn-helix transcriptiona... [more]
A0A1Y5TVS2_9PROT6.470e-4862.07DNA-binding transcriptional repressor MarR n=1 Tax... [more]
A0A081BD46_9HYPH9.120e-4854.14MarR family transcriptional regulator n=1 Tax=Tepi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1685contigP-wetherbeei_contig1685:3991..4497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_2463
Preferred namepetP
PFAMsMarR_2
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-48
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1RIX7@1224|Proteobacteria,2U94M@28211|Alphaproteobacteria,4BQP7@82117|unclassified Alphaproteobacteria
Descriptionhelix_turn_helix multiple antibiotic resistance protein
Cds size507
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.552982-CDS-P-wetherbeei_contig1685:3990..44971683186099.552982-CDS-P-wetherbeei_contig1685:3990..4497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1685 3991..4497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1685.3.1prot_P-wetherbeei_contig1685.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1685 3991..4497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1685.3.1

>prot_P-wetherbeei_contig1685.3.1 ID=prot_P-wetherbeei_contig1685.3.1|Name=mRNA_P-wetherbeei_contig1685.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MADINNLYTVHPPIETGDSAELRKAIELLFFAYRDSTSDADAILARTGYG
RAHHRILYFVGAYPGINVAQLLSILRITKQSLGRVLKQLVKQEFVEQRAG
KNDRRQRLLFLTPKGQAFEKQLSIPQQARVRRAFAASGPDAVAGYLSVLE
HLIDEAERKAILDAIRHG*
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mRNA from alignment at P-wetherbeei_contig1685:3991..4497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1685.3.1 ID=mRNA_P-wetherbeei_contig1685.3.1|Name=mRNA_P-wetherbeei_contig1685.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig1685:3991..4497- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGACATAAATAATTTATATACGGTGCATCCTCCGATCGAGACTGG CGATTCGGCTGAGTTGCGCAAAGCCATCGAATTATTGTTTTTCGCCTATC GCGATTCAACCAGCGACGCGGACGCCATTCTGGCGCGCACCGGTTATGGC CGGGCGCATCATCGCATTCTGTATTTTGTGGGCGCCTATCCCGGCATCAA TGTAGCGCAATTGCTGAGCATTTTGCGCATCACCAAACAAAGTCTGGGGC GGGTTCTGAAGCAGCTGGTCAAACAGGAATTTGTGGAGCAGCGCGCCGGT AAAAATGACCGGCGTCAGCGGCTGCTGTTTCTGACCCCTAAGGGGCAGGC GTTTGAAAAGCAGCTTTCCATCCCGCAACAGGCGCGGGTACGGCGCGCAT TTGCCGCATCAGGCCCGGATGCTGTGGCGGGATATTTATCCGTACTCGAA CATTTGATTGATGAGGCGGAACGCAAAGCAATTCTGGATGCAATCAGGCA TGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1685:3991..4497-

>mRNA_P-wetherbeei_contig1685.3.1 ID=mRNA_P-wetherbeei_contig1685.3.1|Name=mRNA_P-wetherbeei_contig1685.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig1685:3991..4497- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGACATAAATAATTTATATACGGTGCATCCTCCGATCGAGACTGG
CGATTCGGCTGAGTTGCGCAAAGCCATCGAATTATTGTTTTTCGCCTATC
GCGATTCAACCAGCGACGCGGACGCCATTCTGGCGCGCACCGGTTATGGC
CGGGCGCATCATCGCATTCTGTATTTTGTGGGCGCCTATCCCGGCATCAA
TGTAGCGCAATTGCTGAGCATTTTGCGCATCACCAAACAAAGTCTGGGGC
GGGTTCTGAAGCAGCTGGTCAAACAGGAATTTGTGGAGCAGCGCGCCGGT
AAAAATGACCGGCGTCAGCGGCTGCTGTTTCTGACCCCTAAGGGGCAGGC
GTTTGAAAAGCAGCTTTCCATCCCGCAACAGGCGCGGGTACGGCGCGCAT
TTGCCGCATCAGGCCCGGATGCTGTGGCGGGATATTTATCCGTACTCGAA
CATTTGATTGATGAGGCGGAACGCAAAGCAATTCTGGATGCAATCAGGCA
TGGCTAG
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