mRNA_P-wetherbeei_contig1684.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1684.1.1
Unique NamemRNA_P-wetherbeei_contig1684.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1684.1.1 vs. uniprot
Match: A0A1W4X132_AGRPL (charged multivesicular body protein 7 isoform X1 n=2 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4X132_AGRPL)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-6
Identity = 41/122 (33.61%), Postives = 59/122 (48.36%), Query Frame = 2 
Query:  119 LQPDWGDEHRMGYLM----SAGLDPSTDADKLAFWSAAVKHYCEQATEISIDLDRLRRTLSRNGNTALGLEGALQAMATRGEMLPRRKVLLSETPS-TWSGWLLNVLVVRPARAAFASVRLS 469
            L P W DE RM  L     S   +P     KLAFW   ++ YC+++      L  L +  +RNG +   LE  +  M    E+    + L  ETPS +W+GW   VLV +P +  F +V+ S
Sbjct:    8 LPPCWNDETRMNVLFAPFRSRNANPQDWDSKLAFWRNMIELYCKESKCYKFTLPDLLKVFNRNGRSPGCLEVVINEMFKLNEIKSVSEYL-EETPSKSWTGWATQVLVKKPIKWTFHTVKNS 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1W4X132_AGRPL1.560e-633.61charged multivesicular body protein 7 isoform X1 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1684contigP-wetherbeei_contig1684:654..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJM0
PFAMsSnf7
Model size2412
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.25e-38
EggNOG OGs2D0TJ@1|root,2SFEZ@2759|Eukaryota
DescriptionSnf7
Cds size1785
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.2028568-UTR-P-wetherbeei_contig1684:653..12461683186099.2028568-UTR-P-wetherbeei_contig1684:653..1246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1684 654..1246 -
1683186099.242217-UTR-P-wetherbeei_contig1684:4044..40781683186099.242217-UTR-P-wetherbeei_contig1684:4044..4078Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1684 4045..4078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.213577-CDS-P-wetherbeei_contig1684:1246..18971683186099.213577-CDS-P-wetherbeei_contig1684:1246..1897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 1247..1897 -
1683186099.2229974-CDS-P-wetherbeei_contig1684:2520..27111683186099.2229974-CDS-P-wetherbeei_contig1684:2520..2711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 2521..2711 -
1683186099.2326648-CDS-P-wetherbeei_contig1684:3101..40441683186099.2326648-CDS-P-wetherbeei_contig1684:3101..4044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 3102..4044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1684.1.1prot_P-wetherbeei_contig1684.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1684 1247..4044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1684.1.1

>prot_P-wetherbeei_contig1684.1.1 ID=prot_P-wetherbeei_contig1684.1.1|Name=mRNA_P-wetherbeei_contig1684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=595bp
MSFPPAPPSPPPCCPICKEGPDANASCPLQPDWGDEHRMGYLMSAGLDPS
TDADKLAFWSAAVKHYCEQATEISIDLDRLRRTLSRNGNTALGLEGALQA
MATRGEMLPRRKVLLSETPSTWSGWLLNVLVVRPARAAFASVRLSSEGSA
PPLDGAEPYVFRDVLEDLAACVAEYCSAAEDDSQMLVLTADPSAATAIAR
NGAASSSAASGSRSVRTFLTRVGEAVGSSSTSNAVRAPAAGERHSAAAAH
LRSISEADAGALAAYMVATRRAARAGRVVKFGGRAAGAAATSAAVKAGLQ
ISEADQHMLFLRCTVDKLRTEAERLQAQADAAAADALREKRTGHAAMALL
HMRRRKRANDLLMLRLDCLTNLEHCLEKVEGMRVDKQVLEAQELAARAMR
AFREQHHLTAERVDDAIFDMAEELEAADAFGTALGDAGRAAEERAGIFAG
GGAREVDDALAAELVALEAEVAAERPVAAMGATAAVTVVAAARTATAASV
AEAAAAAETAETAETQTAVAIEWAAVPEQIQTAEVPASAGAPATPAVPGP
FTAGLAAGSGRPLVDLTGQEGLAAPSASRAAARAMGLNRVALPV*
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mRNA from alignment at P-wetherbeei_contig1684:654..4078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1684.1.1 ID=mRNA_P-wetherbeei_contig1684.1.1|Name=mRNA_P-wetherbeei_contig1684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3425bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:654..4078- (Phaeothamnion wetherbeei SAG_119_79)
GTTTCGGAGTCTTTTTTGAATTTCGCAAAACGCGATGAGCTTCCCTCCCG
CTCCGCCGTCCCCGCCGCCATGCTGTCCCATATGCAAGGAAGGGCCGGAT
GCCAACGCTTCGTGTCCGCTGCAGCCGGATTGGGGAGACGAGCATCGGAT
GGGGTACCTAATGAGCGCAGGCTTGGATCCCAGCACCGATGCTGACAAAC
TGGCCTTCTGGTCCGCCGCCGTCAAGCACTACTGCGAACAGGCGACCGAA
ATTTCCATTGATTTGGATCGCCTGCGTCGCACGCTTTCTCGCAATGGCAA
CACGGCGCTCGGCCTCGAAGGTGCCCTGCAAGCCATGGCCACGCGGGGCG
AGATGCTTCCGAGACGAAAGGTGCTGCTTTCGGAGACGCCCTCCACGTGG
TCCGGCTGGCTGCTGAATGTTTTGGTCGTGCGTCCGGCAAGAGCCGCGTT
TGCGAGCGTGAGACTCTCGTCAGAAGGGAGCGCGCCGCCTCTCGACGGCG
CAGAGCCCTACGTATTCCGGGACGTGCTCGAGGACCTGGCGGCCTGCGTC
GCCGAATACTGCAGTGCCGCAGAGGACGATTCGCAGATGCTGGTCCTCAC
TGCCGATCCCAGCGCCGCCACCGCCATTGCTCGAAACGGGGCCGCCTCTT
CCTCCGCGGCCTCGGGCAGCCGCTCCGTCCGCACCTTTTTGACCCGGGTG
GGCGAGGCGGTTGGCAGTTCCAGCACGTCCAATGCAGTGAGAGCACCTGC
GGCGGGGGAAAGGCACTCGGCAGCGGCGGCACATCTCAGAAGCATCTCTG
AAGCGGACGCCGGCGCGCTGGCGGCCTACATGGTGGCGACACGACGGGCG
GCGCGGGCGGGGCGGGTCGTCAAGTTCGGCGGCAGAGCCGCCGGCGCTGC
GGCGACGTCGGCGGCAGTGAAGGCGGGTCTGCAAATCTCCGAGGCGGATC
AGCACATGCTCTTTTTGCGATGCACAGGTCAGTTGGTTAAGCGCAAGGGT
TGCGACGGGTCTTTTTCAGGCCTGTTTGGCTTGTTGAGCGTCGTTCATCT
GGAGGCGGCATGCTGCGATCGAAGTTTTGGGAAAATGTTTGGAAAAGAGA
GTCCCATGCCTTTTAATGGTGCCGCCTCAAATCGTCGGGCCCTTCCACTG
CTGCGGCGATGTATTTACCAGGAAAAAAACTGTCTTTGAGCCTCTGGGAA
GACGATTGATCGAATTGGCACGCCACTTAAACCTTCGGTGGATGTGCCTG
CTCCTTGTCTCAACCGCAACCTGCCGCCGTGTCCTGCTGTCCGCCACCCG
CCGCCGTCCGCCGCAATGACCTATTTTCCATCGATGCTGCCGTCTTCCTG
CCTCTCATCCACACCAGTGGACAAGCTGCGGACGGAGGCAGAGAGGCTGC
AGGCGCAGGCGGACGCCGCCGCCGCCGACGCCCTCCGCGAGAAGCGCACC
GGCCACGCCGCCATGGCGCTGCTGCACATGCGCCGCCGGAAGCGTGCCAA
CGACCTGCTGATGCTGCGGCTCGACTGCCTTACCAACCTGGAGCACTGCC
TCGAAAAGGTGCGCGTGATCTTTGGCGGCTTACTTCTTTAGATTTCGTTT
CAGCGCCGTTTTGTGGGAAGATGTAAAGCCGTTACTTGGCGGGAAGAGTG
ATGGGTTCCTCATCGGATACAATTAGGCCTGCCGTATGAGCTTTGGGGGA
AGAAAGCCGTGTCGACATTAGCACTTGCCCGCTATCAGACACGTTGAGTT
GGAGAGCGGGCCCGGGAAACGCCTATTATGAGTTTCCGGGCACGAACTGG
ACTCCCCAGCGCCAGCTTGCCTCCGTCGTTATCACCATCCGTGCCTACAT
CGATTCTCATTCGCTGCCACTGCCGCCGCCGCCGGCGCCCTCGTCGCCCC
GCCACTGTCGTCCTGGCTGCCATGGTCGCCACTATCATAATTGCCGCTGG
TTGCCGCCGCCGCTCTTTTCCGCTATAAAACCGCCGCCGCGGCCGCCGCC
GCCGCGGTCGCCGCCGTCACTTCGCATCGCCACTGCCACCGCCGCCACCG
GTCTCCGCGGCTGCCGCCTTCCTTGCTGCCGCCTTCATTGCTGCGACCGC
TGTTCCCTGCCGTTTCTGCCGCCGTTGCCGCCGTCACCGCTGCTTCTACT
CCTGCCCGCCTCCCCTTCCGGCGAATGCCAGGTGGAAGGGATGCGAGTGG
ACAAGCAAGTGCTCGAGGCTCAAGAGCTAGCCGCCCGCGCCATGCGCGCC
TTCCGTGAGCAGCACCACCTGACGGCCGAGCGGGTCGACGACGCCATCTT
CGACATGGCGGAGGAATTGGAGGCGGCCGACGCCTTCGGAACGGCGCTCG
GCGACGCTGGCCGCGCCGCGGAGGAGCGGGCCGGCATCTTTGCGGGCGGT
GGGGCGCGGGAGGTGGACGACGCGCTGGCGGCGGAGCTGGTGGCGCTGGA
GGCGGAGGTGGCGGCGGAGCGGCCGGTGGCGGCGATGGGGGCGACGGCGG
CGGTGACGGTGGTGGCGGCAGCGAGGACTGCGACGGCGGCGTCCGTGGCG
GAGGCGGCTGCGGCGGCGGAGACGGCGGAGACGGCGGAGACGCAGACTGC
GGTAGCGATTGAATGGGCTGCTGTGCCAGAACAGATTCAAACAGCGGAAG
TTCCTGCGAGTGCTGGTGCGCCCGCCACACCGGCCGTACCAGGGCCCTTC
ACGGCCGGATTGGCTGCAGGGTCAGGCAGGCCACTAGTAGATCTGACTGG
GCAAGAGGGCCTTGCTGCTCCCTCGGCGAGCCGAGCGGCGGCCAGAGCGA
TGGGACTGAACCGCGTGGCGTTGCCGGTGTGAGGGGGGTGGTCATATACA
AAGGGGGTTACAATTTTGATTGATGCGGCGCTTCATTGAGGCTATGTAAT
AAGAAATCTGGCAGGTAGGTTCGCTCAACATAAGTCTTCATTTGAAGCAA
AACTCCATTAGAGGTCACTTTGGTCGGTCGACAAAAAACGTGAATTCAAC
GGCTGCCGTCAGGCTCAGGTGCTACTTTTGGAAAGTGCTGTGGGCTGGCG
GAGCTGGTGGGACGATCACCCACCGGATTGTTCCCTCTGAACGCGAGATT
GCCAGCCATTGAAGACCGGTACTGACCGCTGCACAGCTCCGGCGCGCCTA
AGCGCTGGTGAGGCAACGGCTGGACAGCAGCAGCGGCCCGACGACAGCAA
AAAGCATTCCTCCTCGCGTGAACGCGACTGAGAGAATGATTGCGGCATAC
GTGGAACTCGGAGGCGAAGCAGGACGGATAGCGACAAGGCCTGGAGATTC
CTCGAATCCTTGGCCCGCGGAAGGCCTTTGTTTTCGGGTGCAGGCGCCAT
TGAATCTCGAAGGGCGAGAGGTGATAAACGAAAAGACGCGGATGAGATGC
GCCCTGCAGGTTCTCTCCCCTTGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1684:654..4078-

>mRNA_P-wetherbeei_contig1684.1.1 ID=mRNA_P-wetherbeei_contig1684.1.1|Name=mRNA_P-wetherbeei_contig1684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1785bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:654..4078- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTCCCTCCCGCTCCGCCGTCCCCGCCGCCATGCTGTCCCATATG
CAAGGAAGGGCCGGATGCCAACGCTTCGTGTCCGCTGCAGCCGGATTGGG
GAGACGAGCATCGGATGGGGTACCTAATGAGCGCAGGCTTGGATCCCAGC
ACCGATGCTGACAAACTGGCCTTCTGGTCCGCCGCCGTCAAGCACTACTG
CGAACAGGCGACCGAAATTTCCATTGATTTGGATCGCCTGCGTCGCACGC
TTTCTCGCAATGGCAACACGGCGCTCGGCCTCGAAGGTGCCCTGCAAGCC
ATGGCCACGCGGGGCGAGATGCTTCCGAGACGAAAGGTGCTGCTTTCGGA
GACGCCCTCCACGTGGTCCGGCTGGCTGCTGAATGTTTTGGTCGTGCGTC
CGGCAAGAGCCGCGTTTGCGAGCGTGAGACTCTCGTCAGAAGGGAGCGCG
CCGCCTCTCGACGGCGCAGAGCCCTACGTATTCCGGGACGTGCTCGAGGA
CCTGGCGGCCTGCGTCGCCGAATACTGCAGTGCCGCAGAGGACGATTCGC
AGATGCTGGTCCTCACTGCCGATCCCAGCGCCGCCACCGCCATTGCTCGA
AACGGGGCCGCCTCTTCCTCCGCGGCCTCGGGCAGCCGCTCCGTCCGCAC
CTTTTTGACCCGGGTGGGCGAGGCGGTTGGCAGTTCCAGCACGTCCAATG
CAGTGAGAGCACCTGCGGCGGGGGAAAGGCACTCGGCAGCGGCGGCACAT
CTCAGAAGCATCTCTGAAGCGGACGCCGGCGCGCTGGCGGCCTACATGGT
GGCGACACGACGGGCGGCGCGGGCGGGGCGGGTCGTCAAGTTCGGCGGCA
GAGCCGCCGGCGCTGCGGCGACGTCGGCGGCAGTGAAGGCGGGTCTGCAA
ATCTCCGAGGCGGATCAGCACATGCTCTTTTTGCGATGCACAGTGGACAA
GCTGCGGACGGAGGCAGAGAGGCTGCAGGCGCAGGCGGACGCCGCCGCCG
CCGACGCCCTCCGCGAGAAGCGCACCGGCCACGCCGCCATGGCGCTGCTG
CACATGCGCCGCCGGAAGCGTGCCAACGACCTGCTGATGCTGCGGCTCGA
CTGCCTTACCAACCTGGAGCACTGCCTCGAAAAGGTGGAAGGGATGCGAG
TGGACAAGCAAGTGCTCGAGGCTCAAGAGCTAGCCGCCCGCGCCATGCGC
GCCTTCCGTGAGCAGCACCACCTGACGGCCGAGCGGGTCGACGACGCCAT
CTTCGACATGGCGGAGGAATTGGAGGCGGCCGACGCCTTCGGAACGGCGC
TCGGCGACGCTGGCCGCGCCGCGGAGGAGCGGGCCGGCATCTTTGCGGGC
GGTGGGGCGCGGGAGGTGGACGACGCGCTGGCGGCGGAGCTGGTGGCGCT
GGAGGCGGAGGTGGCGGCGGAGCGGCCGGTGGCGGCGATGGGGGCGACGG
CGGCGGTGACGGTGGTGGCGGCAGCGAGGACTGCGACGGCGGCGTCCGTG
GCGGAGGCGGCTGCGGCGGCGGAGACGGCGGAGACGGCGGAGACGCAGAC
TGCGGTAGCGATTGAATGGGCTGCTGTGCCAGAACAGATTCAAACAGCGG
AAGTTCCTGCGAGTGCTGGTGCGCCCGCCACACCGGCCGTACCAGGGCCC
TTCACGGCCGGATTGGCTGCAGGGTCAGGCAGGCCACTAGTAGATCTGAC
TGGGCAAGAGGGCCTTGCTGCTCCCTCGGCGAGCCGAGCGGCGGCCAGAG
CGATGGGACTGAACCGCGTGGCGTTGCCGGTGTGA
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