mRNA_P-wetherbeei_contig16830.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16830.2.1
Unique NamemRNA_P-wetherbeei_contig16830.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: A0A429YNN3_9HYPH (ABC transporter ATP-binding protein n=3 Tax=Aquibium TaxID=2911176 RepID=A0A429YNN3_9HYPH)

HSP 1 Score: 266 bits (681), Expect = 7.890e-88
Identity = 141/176 (80.11%), Postives = 158/176 (89.77%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGGARSS 528
            G +LT +SP+ARVRAGMMLVPEGRQIFVSMTVHENL MG YLR + D A DIEAIY RFPNLA RRDM+ASVLSGGEQQMLAIGRALVGRP LMMLDEPSLGLSPL+VSRLFDLIVELN+SGIGILLVEQNT+MAL VA+RGYVLELG +VL+D A +LA + +LT+AYLGG ++S
Sbjct:   62 GKDLTGASPSARVRAGMMLVPEGRQIFVSMTVHENLQMGVYLRSDRDAARDIEAIYDRFPNLAERRDMKASVLSGGEQQMLAIGRALVGRPRLMMLDEPSLGLSPLFVSRLFDLIVELNQSGIGILLVEQNTTMALEVAARGYVLELGSIVLEDTAESLARNPTLTEAYLGGHQNS 237
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: A0A2G2CYI4_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. TaxID=1940281 RepID=A0A2G2CYI4_9HYPH)

HSP 1 Score: 260 bits (664), Expect = 3.130e-85
Identity = 135/172 (78.49%), Postives = 154/172 (89.53%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGG 516
            G +L+ +SPAARV +GMMLVPEGRQIFVSMTVHENL MG YLR + DVA D++A+Y RFPNLA RRDM+ASVLSGGEQQMLAIGRALVGRP L+MLDEPSLGLSPL+V+RLFDLIVELNKSGI ILLVEQNT+MAL VA RGYVLELGKVV++D AA L+ + +LT+AYLGG
Sbjct:   62 GHDLSRASPAARVSSGMMLVPEGRQIFVSMTVHENLQMGVYLRSDRDVARDLDAVYDRFPNLAERRDMKASVLSGGEQQMLAIGRALVGRPRLIMLDEPSLGLSPLFVARLFDLIVELNKSGISILLVEQNTTMALDVAQRGYVLELGKVVIEDSAAALSKNTALTEAYLGG 233
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: A0A7W4VR40_9HYPH (Branched-chain amino acid transport system ATP-binding protein n=2 Tax=Microvirga lupini TaxID=420324 RepID=A0A7W4VR40_9HYPH)

HSP 1 Score: 257 bits (657), Expect = 3.620e-84
Identity = 133/172 (77.33%), Postives = 155/172 (90.12%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGG 516
            G +LT + P+ARVR GMMLVPEGRQIFVSMTVHENLLMG+Y+R +ADV+ D+EAIY RFPNLA RR+M+ASVLSGGEQQMLAIGRALVGRP L+MLDEPSLGLSPL+V +LF+LI+ELNKSGI ILLVEQNT+MAL VASRGYVLELG  VL+D AA L+++ +LT+AYLGG
Sbjct:   63 GTDLTQAPPSARVRNGMMLVPEGRQIFVSMTVHENLLMGSYMRADADVSRDMEAIYDRFPNLAERRNMKASVLSGGEQQMLAIGRALVGRPRLIMLDEPSLGLSPLFVGKLFELILELNKSGISILLVEQNTTMALEVASRGYVLELGSAVLEDDAAALSNNTALTEAYLGG 234
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: A0A1R3TR94_9HYPH (LIV-I protein F n=4 Tax=Agrobacterium TaxID=357 RepID=A0A1R3TR94_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 2.030e-81
Identity = 132/180 (73.33%), Postives = 152/180 (84.44%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGGARSSAFSP 540
            G ++TN SPA RV  GMMLVPEGRQIFVSMTVHENLLMGAYLR + D   D++A+Y RFPNL+ R+DM+ASVLSGGEQQMLAIGRALV RP L+MLDEPSLGLSPL+V+ LF+LI ELN+ GI ILLVEQNT MAL  ASRGYVLELGKVVL D AA LA + +LT+AYLGG+ +S+ SP
Sbjct:   63 GEDITNFSPADRVTRGMMLVPEGRQIFVSMTVHENLLMGAYLRHDGDWHRDLQAVYQRFPNLSERKDMKASVLSGGEQQMLAIGRALVARPRLIMLDEPSLGLSPLFVNNLFELIKELNRDGISILLVEQNTGMALETASRGYVLELGKVVLADSAAALAGNTALTEAYLGGSHASSTSP 242
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: UPI0013EA8A39 (ABC transporter ATP-binding protein n=1 Tax=Rhizobium pseudoryzae TaxID=379684 RepID=UPI0013EA8A39)

HSP 1 Score: 248 bits (633), Expect = 1.280e-80
Identity = 132/177 (74.58%), Postives = 148/177 (83.62%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGGARSSA 531
            G EL  S PA RVR GM LVPEGRQIFVSMTVHENLLMGAYLRR++D   D++ +Y RFPNLA RRDM+ASVLSGGEQQMLAIGRALV RP L+MLDEPSLGLSPL+V+ LFDLIVELN+SGI ILLVEQNT MAL +A RGYVLELG VVL D+A  LA + +LT AYLGG  ++A
Sbjct:   63 GRELAQSVPAERVRHGMALVPEGRQIFVSMTVHENLLMGAYLRRDSDWGRDLKQVYDRFPNLAERRDMKASVLSGGEQQMLAIGRALVSRPRLIMLDEPSLGLSPLFVANLFDLIVELNRSGISILLVEQNTGMALDIAGRGYVLELGSVVLADEAQALAGNSALTQAYLGGGHAAA 239
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: UPI001C6945D9 (ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6945D9)

HSP 1 Score: 245 bits (626), Expect = 1.860e-79
Identity = 128/172 (74.42%), Postives = 149/172 (86.63%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGG 516
            G ++T+ SPAARV+AGM+LVPEGRQIFVSMTV+ENLLMGAYLRR+ ++  D+  IY RFPNLA RR M A  LSGGEQQMLAIGRALVGRP L+MLDEPSLGLSPLYV RLF+L+ ELNK GI ILLVEQNTSMAL +ASRGYVLELG+ VL+D+A  LA++ +LT+AYLGG
Sbjct:   62 GKDMTSKSPAARVKAGMVLVPEGRQIFVSMTVNENLLMGAYLRRDDNIEKDLTEIYDRFPNLAERRHMSAKTLSGGEQQMLAIGRALVGRPRLIMLDEPSLGLSPLYVDRLFNLLGELNKDGIAILLVEQNTSMALDIASRGYVLELGRKVLEDQAEALATNTALTEAYLGG 233
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: UPI000412FC8D (ABC transporter ATP-binding protein n=1 Tax=Gemmobacter nectariphilus TaxID=220343 RepID=UPI000412FC8D)

HSP 1 Score: 243 bits (619), Expect = 1.450e-78
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNAD-VAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLG 513
            G ++T  +PAARV+AGM+LVPEGRQIFVSMTVH+NLLMGAYLR +A  V  DIEAIY RFPNLA+RRD  ASVLSGGEQQMLA+GRALVGRP LMMLDEPSLGLSPL+V +LF+LI +LN  G+GILLVEQNT+MAL VA+RGYVLELG+VV  D A  L+ D +LT+AYLG
Sbjct:   63 GVDMTRLAPAARVKAGMVLVPEGRQIFVSMTVHDNLLMGAYLRSDAGGVQADIEAIYDRFPNLASRRDALASVLSGGEQQMLAVGRALVGRPRLMMLDEPSLGLSPLFVGKLFELIADLNSHGLGILLVEQNTTMALEVAARGYVLELGRVVAADTAEALSRDAALTEAYLG 234
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: UPI000C7E9C4B (ABC transporter ATP-binding protein n=1 Tax=Kandeliimicrobium roseum TaxID=1737570 RepID=UPI000C7E9C4B)

HSP 1 Score: 242 bits (618), Expect = 2.590e-78
Identity = 129/172 (75.00%), Postives = 145/172 (84.30%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGG 516
            G +LT  SPAARV +GM+LVPEGRQIFVSMTVHENLLMGAYLRR+   A D +AIY RFPNLA+R+   AS LSGGEQQMLAIGRALV RP L+MLDEPSLGLSPL+V RLF L+ ELN  GIGILLVEQNT+MAL +ASRGYVLELGKVVL+D A  L+S+  LT+AYLGG
Sbjct:   62 GRDLTAQSPAARVTSGMVLVPEGRQIFVSMTVHENLLMGAYLRRDGREAADFDAIYDRFPNLASRKYASASSLSGGEQQMLAIGRALVARPRLVMLDEPSLGLSPLFVERLFGLLRELNDDGIGILLVEQNTAMALEIASRGYVLELGKVVLEDSADALSSNTQLTEAYLGG 233
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: UPI001AE4C400 (ABC transporter ATP-binding protein n=1 Tax=Neorhizobium galegae TaxID=399 RepID=UPI001AE4C400)

HSP 1 Score: 242 bits (618), Expect = 2.850e-78
Identity = 130/173 (75.14%), Postives = 146/173 (84.39%), Query Frame = 1 
Query:   10 LTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGGARSS 528
            LT++SPA RVR GMMLVPEGRQIFVSMTV ENLLMGAYLRR AD   D+  IY RFPNLA RR M+AS+LSGGEQQMLAIGRALV RP L+MLDEPSLGLSPL+V+ LF+LI ELN+SGI ILLVEQNT+MAL VA RGYVLELG+VVL D+A  L+ D +L +AYLGG  SS
Sbjct:   65 LTHASPAERVRRGMMLVPEGRQIFVSMTVEENLLMGAYLRRGADWHQDLSQIYDRFPNLAERRHMKASILSGGEQQMLAIGRALVSRPRLIMLDEPSLGLSPLFVNNLFELIKELNRSGISILLVEQNTAMALDVAERGYVLELGRVVLSDRADALSRDPALAEAYLGGHASS 237
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BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Match: A0A549TFR6_9HYPH (ABC transporter ATP-binding protein n=2 Tax=Rhizobium TaxID=379 RepID=A0A549TFR6_9HYPH)

HSP 1 Score: 242 bits (617), Expect = 3.920e-78
Identity = 128/172 (74.42%), Postives = 145/172 (84.30%), Query Frame = 1 
Query:    1 GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAGDIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPSLGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKVVLDDKAATLASDKSLTDAYLGG 516
            G +LT++SPA RVR GMMLVPEGRQIFVSMTVHENL+MGAYLR + D   D++ +Y RFPNLA RRDM+ASVLSGGEQQMLAIGRALV RP L+MLDEPSLGLSPL+V+ LF+LI ELN+ GI ILLVEQNT+MAL  ASRGYVLELG+VVL D A  LA D +L  AYLGG
Sbjct:   62 GEDLTHASPADRVRRGMMLVPEGRQIFVSMTVHENLMMGAYLRSDGDWMRDLKEVYDRFPNLAERRDMKASVLSGGEQQMLAIGRALVSRPRLIMLDEPSLGLSPLFVNNLFELIRELNRGGISILLVEQNTAMALETASRGYVLELGRVVLADTAEALAGDPALAAAYLGG 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16830.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A429YNN3_9HYPH7.890e-8880.11ABC transporter ATP-binding protein n=3 Tax=Aquibi... [more]
A0A2G2CYI4_9HYPH3.130e-8578.49ABC transporter ATP-binding protein n=1 Tax=Hoefle... [more]
A0A7W4VR40_9HYPH3.620e-8477.33Branched-chain amino acid transport system ATP-bin... [more]
A0A1R3TR94_9HYPH2.030e-8173.33LIV-I protein F n=4 Tax=Agrobacterium TaxID=357 Re... [more]
UPI0013EA8A391.280e-8074.58ABC transporter ATP-binding protein n=1 Tax=Rhizob... [more]
UPI001C6945D91.860e-7974.42ABC transporter ATP-binding protein n=1 Tax=Hoefle... [more]
UPI000412FC8D1.450e-7874.42ABC transporter ATP-binding protein n=1 Tax=Gemmob... [more]
UPI000C7E9C4B2.590e-7875.00ABC transporter ATP-binding protein n=1 Tax=Kandel... [more]
UPI001AE4C4002.850e-7875.14ABC transporter ATP-binding protein n=1 Tax=Neorhi... [more]
A0A549TFR6_9HYPH3.920e-7874.42ABC transporter ATP-binding protein n=2 Tax=Rhizob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16830contigP-wetherbeei_contig16830:930..1481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121271.AUCM01000009_gene2245
PFAMsABC_tran
Model size552
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01996
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.38e-79
EggNOG OGsCOG0410@1|root,COG0410@2|Bacteria,1RC6Y@1224|Proteobacteria,2U6CC@28211|Alphaproteobacteria
DescriptionATPases associated with a variety of cellular activities
Cds size552
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.0060265-CDS-P-wetherbeei_contig16830:929..14811683186099.0060265-CDS-P-wetherbeei_contig16830:929..1481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16830 930..1481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16830.2.1prot_P-wetherbeei_contig16830.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16830 930..1481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16830.2.1

>prot_P-wetherbeei_contig16830.2.1 ID=prot_P-wetherbeei_contig16830.2.1|Name=mRNA_P-wetherbeei_contig16830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
GCELTNSSPAARVRAGMMLVPEGRQIFVSMTVHENLLMGAYLRRNADVAG
DIEAIYARFPNLAARRDMQASVLSGGEQQMLAIGRALVGRPGLMMLDEPS
LGLSPLYVSRLFDLIVELNKSGIGILLVEQNTSMALAVASRGYVLELGKV
VLDDKAATLASDKSLTDAYLGGARSSAFSPAPS*
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mRNA from alignment at P-wetherbeei_contig16830:930..1481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16830.2.1 ID=mRNA_P-wetherbeei_contig16830.2.1|Name=mRNA_P-wetherbeei_contig16830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16830:930..1481- (Phaeothamnion wetherbeei SAG_119_79)
GGATGCGAGCTCACGAACTCGAGCCCCGCCGCACGAGTGAGAGCCGGCAT
GATGCTCGTGCCGGAAGGTCGCCAGATCTTCGTCAGTATGACCGTTCACG
AGAACCTGCTGATGGGCGCTTATCTGCGACGGAACGCGGACGTAGCGGGC
GACATCGAAGCGATCTACGCGCGATTTCCCAACCTGGCCGCGCGCAGAGA
CATGCAAGCAAGCGTGCTGTCGGGGGGCGAGCAGCAAATGCTGGCTATCG
GTCGCGCACTCGTCGGCCGGCCCGGACTGATGATGCTTGACGAGCCGTCT
CTAGGTCTGTCGCCACTCTACGTGTCGCGGCTATTCGATCTTATAGTCGA
GCTCAACAAGAGCGGCATCGGCATCTTGCTCGTCGAGCAGAACACCAGCA
TGGCACTTGCCGTCGCTTCGCGCGGATACGTTCTAGAATTGGGCAAAGTC
GTTCTTGACGACAAGGCGGCGACGCTCGCCAGCGACAAATCGCTGACGGA
CGCCTACCTCGGCGGAGCGCGCTCGTCTGCATTTTCGCCAGCGCCATCCT
GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16830:930..1481-

>mRNA_P-wetherbeei_contig16830.2.1 ID=mRNA_P-wetherbeei_contig16830.2.1|Name=mRNA_P-wetherbeei_contig16830.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig16830:930..1481- (Phaeothamnion wetherbeei SAG_119_79)
GGATGCGAGCTCACGAACTCGAGCCCCGCCGCACGAGTGAGAGCCGGCAT
GATGCTCGTGCCGGAAGGTCGCCAGATCTTCGTCAGTATGACCGTTCACG
AGAACCTGCTGATGGGCGCTTATCTGCGACGGAACGCGGACGTAGCGGGC
GACATCGAAGCGATCTACGCGCGATTTCCCAACCTGGCCGCGCGCAGAGA
CATGCAAGCAAGCGTGCTGTCGGGGGGCGAGCAGCAAATGCTGGCTATCG
GTCGCGCACTCGTCGGCCGGCCCGGACTGATGATGCTTGACGAGCCGTCT
CTAGGTCTGTCGCCACTCTACGTGTCGCGGCTATTCGATCTTATAGTCGA
GCTCAACAAGAGCGGCATCGGCATCTTGCTCGTCGAGCAGAACACCAGCA
TGGCACTTGCCGTCGCTTCGCGCGGATACGTTCTAGAATTGGGCAAAGTC
GTTCTTGACGACAAGGCGGCGACGCTCGCCAGCGACAAATCGCTGACGGA
CGCCTACCTCGGCGGAGCGCGCTCGTCTGCATTTTCGCCAGCGCCATCCT
GA
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