mRNA_P-wetherbeei_contig1683.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1683.1.1
Unique NamemRNA_P-wetherbeei_contig1683.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.240e-7
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  556 KGAARRLMAEAVSMCEAIDDGFVVILKSRRRASAADSSERADAAAAGAGAPTTDAGDKPYAARSKRDIAEHYGIAWSTLQPRL 804
            +G ARR+M EA+++CEA+D+GF+V+L ++           A+++  G+  P     D P    SKR+I+E++GIAWSTLQPRL
Sbjct:  312 QGEARRIMMEAIALCEAVDEGFMVVLPAKPVL-------HAESSTRGSAEPAMVDSD-PVCLGSKREISEYFGIAWSTLQPRL 386
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BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Match: A0A6H5JVN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.190e-7
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  514 RLRPEDGKKRVNYTKGAARRLMAEAVSMCEAIDDGFVVILKSRRR 648
            R+ PE+GKKRVNY KG ARR+M EAVS+CEA+  G+ V+   RRR
Sbjct:   41 RVVPEEGKKRVNYGKGDARRIMEEAVSLCEAMALGYEVVFHGRRR 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1683.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWV1_9STRA1.240e-743.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JVN1_9PHAE4.190e-762.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1683contigP-wetherbeei_contig1683:4524..6690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2168
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHomeodomain-like
Ec32 orthologEc-02_006110.1
Cds size2166
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.9404318-CDS-P-wetherbeei_contig1683:4523..66891683186098.9404318-CDS-P-wetherbeei_contig1683:4523..6689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1683 4524..6689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1683.1.1prot_P-wetherbeei_contig1683.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1683 4524..6689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1683.1.1

>prot_P-wetherbeei_contig1683.1.1 ID=prot_P-wetherbeei_contig1683.1.1|Name=mRNA_P-wetherbeei_contig1683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=722bp
RRGPHLQVRVLVPRRCAGAAPSATAPPSHSAWMNALATAAAAAATAGKPP
LRGWSREEAALAASAESSGQSSWLSSQEDSGGGARRRAFSLVCAREPPAL
IPRHADEWGSVSPEPAKRVPASATPDPALPLPRSRSSAGAKKAAAAMAAA
AAAAAAVAMASGVVAPTLPPGRLRPEDGKKRVNYTKGAARRLMAEAVSMC
EAIDDGFVVILKSRRRASAADSSERADAAAAGAGAPTTDAGDKPYAARSK
RDIAEHYGIAWSTLQPRLGKGEAGYGGGSYGGGLAAAATDPVAAATAAAS
GAAGGSSGPAVRQSVKRARAAAAEAAAEAAVEAAAEAAAEAENVGESPRM
PSSKSSRGGSTEKRPRRVPAADSAVQTRASSVDDDDSETGCRGRGVDEAR
GNGGGSNGGGRGGGGGAATGAATGGRSSNGSVVGNSDGERRLPEAVERLM
TEHVMWMLDGGYSVTLEGVADCARQLGALCNVACFVAGESWLAGFAQRHP
ELARRCTANAAAAARCRRGKKRASETSLLLRNCLPFASLPDVEGGGNGSG
GGGGDAFHEGRPPGPADAATPVFTDDKRQHGCFAGLNARSVPEFFSGHME
RLLALGPPCPPGGIDSSGDDNDDDGGGDGEASNAGAGNDDGVGDKGDAGD
GNGDGGGDKGDVGDGNGDDDEDDALRRIYLGGDGKSMNGSIASGGVGRLN
GVANRPPLLFIDDRCGGSGINA
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mRNA from alignment at P-wetherbeei_contig1683:4524..6690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1683.1.1 ID=mRNA_P-wetherbeei_contig1683.1.1|Name=mRNA_P-wetherbeei_contig1683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2167bp|location=Sequence derived from alignment at P-wetherbeei_contig1683:4524..6690+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCGGACCGCACCTGCAAGTCCGCGTCTTGGTGCCGCGGCGCTGCGC
CGGCGCCGCGCCCTCTGCAACGGCACCTCCGTCTCACTCCGCTTGGATGA
ACGCTTTAGCGACGGCGGCGGCGGCGGCGGCGACGGCGGGGAAACCGCCG
CTCCGGGGTTGGTCGCGGGAGGAGGCGGCGCTGGCGGCGAGTGCGGAGAG
TTCCGGCCAGAGTTCATGGCTGTCGAGTCAGGAAGACAGCGGCGGTGGCG
CGCGGCGCCGCGCCTTCTCGCTGGTCTGCGCAAGGGAGCCGCCGGCGCTC
ATCCCGCGCCATGCCGACGAATGGGGTTCCGTCTCACCCGAGCCGGCGAA
ACGCGTGCCTGCATCTGCCACGCCCGATCCCGCGCTGCCATTGCCGCGTT
CACGATCATCGGCAGGAGCAAAGAAGGCGGCGGCGGCGATGGCCGCGGCG
GCCGCGGCGGCAGCGGCGGTAGCTATGGCCTCGGGAGTGGTGGCTCCTAC
GCTTCCGCCGGGGCGGCTCCGGCCCGAAGACGGGAAGAAGCGCGTCAACT
ACACGAAGGGCGCGGCGCGCCGCCTGATGGCGGAGGCGGTTTCCATGTGC
GAGGCGATAGACGACGGCTTCGTCGTCATCCTAAAGAGCCGGCGGCGTGC
CTCGGCGGCAGATTCGTCCGAGCGCGCCGATGCGGCGGCGGCCGGAGCGG
GGGCGCCGACAACCGATGCAGGCGACAAGCCTTACGCGGCGCGCAGCAAG
CGCGACATTGCGGAGCACTACGGCATCGCCTGGTCCACGTTGCAGCCGCG
GCTGGGAAAAGGCGAGGCCGGTTATGGCGGCGGAAGCTACGGCGGCGGCT
TGGCGGCGGCGGCCACGGATCCGGTGGCGGCGGCGACGGCGGCGGCTTCG
GGCGCTGCCGGGGGCTCCTCCGGGCCTGCAGTCCGGCAGTCGGTGAAGCG
AGCTCGGGCGGCAGCCGCGGAGGCAGCGGCCGAGGCAGCGGTCGAGGCAG
CAGCCGAAGCAGCGGCCGAAGCAGAGAATGTGGGCGAATCTCCGAGGATG
CCGTCGTCGAAGTCCTCCCGCGGTGGATCGACCGAGAAGCGTCCGCGCCG
CGTTCCGGCGGCGGATAGCGCTGTTCAGACCAGGGCCAGCTCCGTTGACG
ACGACGACAGCGAGACCGGTTGTCGCGGCCGCGGCGTCGATGAGGCACGT
GGCAACGGCGGCGGCAGTAACGGCGGTGGCCGCGGCGGCGGCGGCGGCGC
TGCCACCGGCGCTGCCACCGGCGGCCGCAGCAGTAACGGTAGTGTTGTCG
GCAACAGCGACGGCGAGAGAAGACTGCCAGAGGCGGTGGAGAGGTTGATG
ACCGAACACGTCATGTGGATGCTTGACGGTGGCTACAGCGTCACCCTGGA
GGGCGTGGCGGACTGCGCGCGGCAGCTTGGTGCACTCTGCAACGTGGCCT
GCTTTGTGGCGGGGGAGTCGTGGCTGGCTGGCTTTGCGCAGCGGCATCCG
GAATTGGCCCGCCGCTGCACCGCAAACGCCGCCGCCGCCGCGCGCTGCCG
TCGGGGCAAAAAGCGGGCTTCGGAGACCAGCCTGTTGCTCCGCAACTGCT
TGCCCTTTGCATCGCTGCCGGACGTGGAAGGCGGCGGCAATGGCAGTGGC
GGCGGGGGCGGCGATGCTTTCCACGAGGGGAGGCCGCCCGGTCCGGCAGA
CGCAGCGACGCCCGTCTTCACCGACGATAAGCGACAGCACGGCTGCTTTG
CGGGGCTGAACGCGCGGAGCGTGCCGGAGTTCTTCTCTGGGCACATGGAA
CGGCTGCTTGCACTGGGCCCGCCGTGTCCGCCTGGCGGCATCGACAGCAG
CGGCGACGATAACGACGACGACGGTGGCGGCGACGGCGAAGCGAGCAATG
CCGGCGCCGGCAACGATGATGGTGTGGGCGACAAGGGTGACGCCGGCGAT
GGCAACGGCGATGGTGGGGGCGACAAGGGTGACGTCGGCGACGGCAATGG
CGATGACGATGAAGACGACGCGCTGCGCCGCATCTACTTGGGCGGCGACG
GTAAAAGCATGAACGGAAGCATTGCCAGCGGCGGCGTTGGCAGGCTTAAC
GGCGTCGCCAACCGCCCGCCCCTCCTGTTTATCGACGATCGCTGTGGCGG
CAGCGGCATCAACGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1683:4524..6690+

>mRNA_P-wetherbeei_contig1683.1.1 ID=mRNA_P-wetherbeei_contig1683.1.1|Name=mRNA_P-wetherbeei_contig1683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2166bp|location=Sequence derived from alignment at P-wetherbeei_contig1683:4524..6690+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCGGACCGCACCTGCAAGTCCGCGTCTTGGTGCCGCGGCGCTGCGC
CGGCGCCGCGCCCTCTGCAACGGCACCTCCGTCTCACTCCGCTTGGATGA
ACGCTTTAGCGACGGCGGCGGCGGCGGCGGCGACGGCGGGGAAACCGCCG
CTCCGGGGTTGGTCGCGGGAGGAGGCGGCGCTGGCGGCGAGTGCGGAGAG
TTCCGGCCAGAGTTCATGGCTGTCGAGTCAGGAAGACAGCGGCGGTGGCG
CGCGGCGCCGCGCCTTCTCGCTGGTCTGCGCAAGGGAGCCGCCGGCGCTC
ATCCCGCGCCATGCCGACGAATGGGGTTCCGTCTCACCCGAGCCGGCGAA
ACGCGTGCCTGCATCTGCCACGCCCGATCCCGCGCTGCCATTGCCGCGTT
CACGATCATCGGCAGGAGCAAAGAAGGCGGCGGCGGCGATGGCCGCGGCG
GCCGCGGCGGCAGCGGCGGTAGCTATGGCCTCGGGAGTGGTGGCTCCTAC
GCTTCCGCCGGGGCGGCTCCGGCCCGAAGACGGGAAGAAGCGCGTCAACT
ACACGAAGGGCGCGGCGCGCCGCCTGATGGCGGAGGCGGTTTCCATGTGC
GAGGCGATAGACGACGGCTTCGTCGTCATCCTAAAGAGCCGGCGGCGTGC
CTCGGCGGCAGATTCGTCCGAGCGCGCCGATGCGGCGGCGGCCGGAGCGG
GGGCGCCGACAACCGATGCAGGCGACAAGCCTTACGCGGCGCGCAGCAAG
CGCGACATTGCGGAGCACTACGGCATCGCCTGGTCCACGTTGCAGCCGCG
GCTGGGAAAAGGCGAGGCCGGTTATGGCGGCGGAAGCTACGGCGGCGGCT
TGGCGGCGGCGGCCACGGATCCGGTGGCGGCGGCGACGGCGGCGGCTTCG
GGCGCTGCCGGGGGCTCCTCCGGGCCTGCAGTCCGGCAGTCGGTGAAGCG
AGCTCGGGCGGCAGCCGCGGAGGCAGCGGCCGAGGCAGCGGTCGAGGCAG
CAGCCGAAGCAGCGGCCGAAGCAGAGAATGTGGGCGAATCTCCGAGGATG
CCGTCGTCGAAGTCCTCCCGCGGTGGATCGACCGAGAAGCGTCCGCGCCG
CGTTCCGGCGGCGGATAGCGCTGTTCAGACCAGGGCCAGCTCCGTTGACG
ACGACGACAGCGAGACCGGTTGTCGCGGCCGCGGCGTCGATGAGGCACGT
GGCAACGGCGGCGGCAGTAACGGCGGTGGCCGCGGCGGCGGCGGCGGCGC
TGCCACCGGCGCTGCCACCGGCGGCCGCAGCAGTAACGGTAGTGTTGTCG
GCAACAGCGACGGCGAGAGAAGACTGCCAGAGGCGGTGGAGAGGTTGATG
ACCGAACACGTCATGTGGATGCTTGACGGTGGCTACAGCGTCACCCTGGA
GGGCGTGGCGGACTGCGCGCGGCAGCTTGGTGCACTCTGCAACGTGGCCT
GCTTTGTGGCGGGGGAGTCGTGGCTGGCTGGCTTTGCGCAGCGGCATCCG
GAATTGGCCCGCCGCTGCACCGCAAACGCCGCCGCCGCCGCGCGCTGCCG
TCGGGGCAAAAAGCGGGCTTCGGAGACCAGCCTGTTGCTCCGCAACTGCT
TGCCCTTTGCATCGCTGCCGGACGTGGAAGGCGGCGGCAATGGCAGTGGC
GGCGGGGGCGGCGATGCTTTCCACGAGGGGAGGCCGCCCGGTCCGGCAGA
CGCAGCGACGCCCGTCTTCACCGACGATAAGCGACAGCACGGCTGCTTTG
CGGGGCTGAACGCGCGGAGCGTGCCGGAGTTCTTCTCTGGGCACATGGAA
CGGCTGCTTGCACTGGGCCCGCCGTGTCCGCCTGGCGGCATCGACAGCAG
CGGCGACGATAACGACGACGACGGTGGCGGCGACGGCGAAGCGAGCAATG
CCGGCGCCGGCAACGATGATGGTGTGGGCGACAAGGGTGACGCCGGCGAT
GGCAACGGCGATGGTGGGGGCGACAAGGGTGACGTCGGCGACGGCAATGG
CGATGACGATGAAGACGACGCGCTGCGCCGCATCTACTTGGGCGGCGACG
GTAAAAGCATGAACGGAAGCATTGCCAGCGGCGGCGTTGGCAGGCTTAAC
GGCGTCGCCAACCGCCCGCCCCTCCTGTTTATCGACGATCGCTGTGGCGG
CAGCGGCATCAACGCT
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