mRNA_P-wetherbeei_contig168.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig168.4.1
Unique NamemRNA_P-wetherbeei_contig168.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.860e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:  853 DQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHAS 1056
            D V IHVCDE RG+T+DF C+RRLLLREM+YF+ +L  A+ P + +IDILVHCDVR+FEWLF Y+H+S
Sbjct:  265 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSP-YDEIDILVHCDVRIFEWLFQYIHSS 331
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.140e-18
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  853 DQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPAAA 1068
            D VTIHVCD+ R VT+DF C+R LLL+EM+YF+ +L+ +AGP   ++DILVHCDVR+FEWLF Y+HA    A
Sbjct:  106 DAVTIHVCDDGRSVTRDFQCNRALLLQEMQYFQGYLSASAGP-FDEVDILVHCDVRIFEWLFRYIHAPRQTA 176
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: W4GXA6_9STRA (BTB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXA6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.820e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  835 ISVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPA 1062
            IS  S + + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +FEWLF+Y+HA  A
Sbjct:   26 ISAASDETIVIHVCDEFRKVNKDFVCNKVLLLDNMKYFKAYLNDASN--HEDIDISVHCDVSIFEWLFNYIHADGA 99
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A425D725_9STRA (BTB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D725_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.310e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  835 ISVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPA 1062
            IS  S + + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +FEWLF+Y+HA  A
Sbjct:  126 ISAASDETIVIHVCDEFRKVNKDFVCNKVLLLDNMKYFKAYLNDASN--HEDIDISVHCDVSIFEWLFNYIHADGA 199
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A418ECH4_9STRA (BTB domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418ECH4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.250e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  835 ISVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPA 1062
            IS  S + + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +FEWLF+Y+HA  A
Sbjct:  134 ISAASDETIVIHVCDEFRKVNKDFVCNKVLLLDNMKYFKAYLNDASN--HEDIDISVHCDVSIFEWLFNYIHADGA 207
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A6G0WUF7_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUF7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.170e-16
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  847 SADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHAS 1056
            S D + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +FEWLF Y+HA 
Sbjct:   32 SEDTIVIHVCDEVRKVNKDFVCNKTLLLDNMKYFKAYLNDASA--HEDIDISVHCDVSIFEWLFRYIHAD 99
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: F0YN17_AURAN (DUF3342 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN17_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-16
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:  811 SAPAVSAAISVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHA 1053
            +APA +A ++V  ++ + IHVCDEAR + +DF CDR +LL EM+YF+ +L   +G    DIDI VHCDV +FEWL  ++H+
Sbjct:    4 TAPAAAAPVNVAQSELIIIHVCDEARQINRDFACDRSVLLEEMKYFQSYLGGDSGS-FDDIDISVHCDVHIFEWLVQWIHS 83
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A3R6YH26_9STRA (DUF3342 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YH26_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-15
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:  838 SVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPA 1062
            S  S + + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +FEWLF Y+H+  A
Sbjct:   27 SAPSEETIVIHVCDEFRKVNKDFVCNKVLLLDNMKYFKAYLNDAST--HEDIDISVHCDVSIFEWLFQYIHSDGA 99
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BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: A0A485KYU2_9STRA (Aste57867_13371 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYU2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.590e-15
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  853 DQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMHASPAAA 1068
            D + IHVCDE R V KDF+C++ LLL  M+YF+ +L DA+   H DIDI VHCDV +F+WLF Y+H    +A
Sbjct:   41 DTIVIHVCDEFRKVNKDFVCNKTLLLDNMKYFKAYLNDASA--HEDIDISVHCDVSIFDWLFRYIHRQGKSA 110
[Close]
BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Match: J9IB09_9SPIT (DUF3342 domain containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IB09_9SPIT)

HSP 1 Score: 88.2 bits (217), Expect = 3.890e-15
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:  826 SAAISVVSADQVTIHVCDEARGVTKDFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMH 1050
            SAA+   +++Q+ IHVCDE + + KDF CDR LLL  M+YFE++LAD+      DIDI VHCD+ +F+WL  Y+H
Sbjct:  225 SAAVQNANSNQIVIHVCDENKKMNKDFKCDRILLLNNMKYFEKYLADSKNLD--DIDISVHCDINIFDWLMKYVH 297
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig168.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL4_ECTSI1.860e-2066.18DUF3342 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YQX4_9STRA1.140e-1861.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4GXA6_9STRA3.820e-1756.58BTB domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A425D725_9STRA5.310e-1756.58BTB domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A418ECH4_9STRA7.250e-1756.58BTB domain-containing protein n=9 Tax=Aphanomyces ... [more]
A0A6G0WUF7_9STRA1.170e-1658.57BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
F0YN17_AURAN2.740e-1649.38DUF3342 domain-containing protein n=1 Tax=Aureococ... [more]
A0A3R6YH26_9STRA1.020e-1554.67DUF3342 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A485KYU2_9STRA2.590e-1554.17Aste57867_13371 protein n=1 Tax=Aphanomyces stella... [more]
J9IB09_9SPIT3.890e-1552.00DUF3342 domain containing protein n=2 Tax=Oxytrich... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig168contigP-wetherbeei_contig168:3128..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHL4
Preferred nameKIAA1841
PFAMsDUF3342,HSP33
Model size1194
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.06e-21
EggNOG OGs28J1Y@1|root,2QRE4@2759|Eukaryota
DescriptionDomain of unknown function (DUF3342)
Cds size1194
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.8877017-CDS-P-wetherbeei_contig168:3127..42771683186097.8877017-CDS-P-wetherbeei_contig168:3127..4277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig168 3128..4277 -
1683186097.8994386-CDS-P-wetherbeei_contig168:4550..45941683186097.8994386-CDS-P-wetherbeei_contig168:4550..4594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig168 4551..4594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig168.4.1prot_P-wetherbeei_contig168.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig168 3128..4594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig168.4.1

>prot_P-wetherbeei_contig168.4.1 ID=prot_P-wetherbeei_contig168.4.1|Name=mRNA_P-wetherbeei_contig168.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=398bp
MSRTNYRSKQVTYDFERSQKRLLAQSLLGGDFMSRLVNEDLLSLRGNGVP
STVGRTGFLPSHFGGLGKQPFPPKILRAASCARRDGGSGQALGMAPVTGS
IVGGGSAISYGAGSPGGDGGVGGNFASGSGHSSSGNDCSSLADSRCDGGI
RRSGAGGDSLAAAAGAAGVMKPPPALSEVQRDFLFPSQREIMARIADGWP
APPSAAIPAAAAAAAATAGATATTTSAAAAAAATEANVAPTATAPAAAAA
SAAASAGPGFAPFAPGFAAASAPAVSAAISVVSADQVTIHVCDEARGVTK
DFLCDRRLLLREMRYFEEHLADAAGPPHADIDILVHCDVRVFEWLFDYMH
ASPAAAVAATASAAASAAAAASAAGMPSRRRCGDLLGREGTAVAAAAR
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mRNA from alignment at P-wetherbeei_contig168:3128..4594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig168.4.1 ID=mRNA_P-wetherbeei_contig168.4.1|Name=mRNA_P-wetherbeei_contig168.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig168:3128..4594- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGGACCAACTACCGGTCGAAACAAGTGACATATGACTTGTAAGT
TCCGCTGCGGTGAGAGTTATGTTGGAAACGCTATGCTTTTCCTCCTCGCA
ATTCAAAAAAACTGCTTTCAAATTTACATCGACCCCTCTGATGGACGGCG
CACGACATCTTGCCAGGCTATGACGTTTTGTGAGTCCGTTTTGTTTCCGC
TGCTTGGTTGCTTGCTTTCTGGGTGCTCGGGCAAGAAACAACCGACCTTC
CAGGAGCATCTGAATGCAAGTCTGGCCGTTTACTGACTACCCTTCTCGTT
TGTGCTCCCGTCTCCAGCGAAAGGTCCCAAAAGCGCTTGCTGGCGCAGAG
CCTTTTGGGCGGCGACTTCATGTCTCGATTGGTGAACGAAGACCTCCTCT
CACTCCGTGGGAATGGCGTGCCCTCGACAGTCGGGCGGACGGGCTTCCTG
CCCAGCCACTTTGGCGGGCTGGGCAAGCAACCATTTCCGCCGAAGATCCT
GCGCGCTGCTTCATGTGCGCGGCGAGACGGTGGCAGCGGGCAAGCGCTAG
GGATGGCACCTGTGACCGGCAGCATCGTCGGGGGCGGAAGCGCAATCTCC
TATGGCGCTGGCAGCCCCGGAGGCGATGGAGGAGTAGGGGGAAACTTTGC
TTCGGGAAGTGGTCATAGTTCGTCGGGCAACGATTGTAGCAGTTTAGCAG
ATAGCAGGTGCGATGGTGGCATTAGAAGAAGCGGGGCTGGCGGAGACAGT
CTAGCGGCGGCGGCTGGCGCAGCAGGCGTGATGAAGCCGCCTCCGGCGCT
TTCTGAGGTGCAAAGAGATTTCCTTTTTCCGTCGCAGCGAGAGATAATGG
CACGGATTGCGGATGGTTGGCCTGCCCCACCATCGGCAGCAATCCCGGCA
GCGGCGGCGGCGGCGGCAGCGACGGCAGGCGCTACCGCGACAACGACGTC
CGCCGCCGCCGCCGCCGCCGCAACAGAAGCAAACGTTGCTCCAACAGCCA
CTGCTCCCGCCGCGGCAGCTGCGTCTGCTGCAGCTTCAGCAGGGCCAGGT
TTTGCGCCTTTTGCGCCAGGGTTTGCTGCTGCATCTGCGCCGGCAGTTTC
AGCGGCGATATCCGTGGTTTCGGCGGACCAGGTGACGATCCACGTGTGCG
ATGAGGCACGCGGTGTGACAAAGGACTTTTTGTGCGACCGGCGGCTGCTG
CTACGCGAGATGCGTTACTTTGAGGAGCATTTGGCCGACGCGGCGGGGCC
CCCGCACGCCGACATCGACATTCTCGTCCACTGCGACGTCCGCGTCTTCG
AGTGGCTCTTTGATTACATGCACGCCTCGCCGGCTGCCGCTGTTGCTGCC
ACCGCTTCCGCCGCTGCGTCTGCAGCCGCGGCCGCCTCTGCCGCGGGCAT
GCCGTCACGCCGCAGATGCGGCGACCTTTTGGGACGCGAAGGCACGGCCG
TCGCGGCGGCCGCCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig168:3128..4594-

>mRNA_P-wetherbeei_contig168.4.1 ID=mRNA_P-wetherbeei_contig168.4.1|Name=mRNA_P-wetherbeei_contig168.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1194bp|location=Sequence derived from alignment at P-wetherbeei_contig168:3128..4594- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGGACCAACTACCGGTCGAAACAAGTGACATATGACTTCGAAAG
GTCCCAAAAGCGCTTGCTGGCGCAGAGCCTTTTGGGCGGCGACTTCATGT
CTCGATTGGTGAACGAAGACCTCCTCTCACTCCGTGGGAATGGCGTGCCC
TCGACAGTCGGGCGGACGGGCTTCCTGCCCAGCCACTTTGGCGGGCTGGG
CAAGCAACCATTTCCGCCGAAGATCCTGCGCGCTGCTTCATGTGCGCGGC
GAGACGGTGGCAGCGGGCAAGCGCTAGGGATGGCACCTGTGACCGGCAGC
ATCGTCGGGGGCGGAAGCGCAATCTCCTATGGCGCTGGCAGCCCCGGAGG
CGATGGAGGAGTAGGGGGAAACTTTGCTTCGGGAAGTGGTCATAGTTCGT
CGGGCAACGATTGTAGCAGTTTAGCAGATAGCAGGTGCGATGGTGGCATT
AGAAGAAGCGGGGCTGGCGGAGACAGTCTAGCGGCGGCGGCTGGCGCAGC
AGGCGTGATGAAGCCGCCTCCGGCGCTTTCTGAGGTGCAAAGAGATTTCC
TTTTTCCGTCGCAGCGAGAGATAATGGCACGGATTGCGGATGGTTGGCCT
GCCCCACCATCGGCAGCAATCCCGGCAGCGGCGGCGGCGGCGGCAGCGAC
GGCAGGCGCTACCGCGACAACGACGTCCGCCGCCGCCGCCGCCGCCGCAA
CAGAAGCAAACGTTGCTCCAACAGCCACTGCTCCCGCCGCGGCAGCTGCG
TCTGCTGCAGCTTCAGCAGGGCCAGGTTTTGCGCCTTTTGCGCCAGGGTT
TGCTGCTGCATCTGCGCCGGCAGTTTCAGCGGCGATATCCGTGGTTTCGG
CGGACCAGGTGACGATCCACGTGTGCGATGAGGCACGCGGTGTGACAAAG
GACTTTTTGTGCGACCGGCGGCTGCTGCTACGCGAGATGCGTTACTTTGA
GGAGCATTTGGCCGACGCGGCGGGGCCCCCGCACGCCGACATCGACATTC
TCGTCCACTGCGACGTCCGCGTCTTCGAGTGGCTCTTTGATTACATGCAC
GCCTCGCCGGCTGCCGCTGTTGCTGCCACCGCTTCCGCCGCTGCGTCTGC
AGCCGCGGCCGCCTCTGCCGCGGGCATGCCGTCACGCCGCAGATGCGGCG
ACCTTTTGGGACGCGAAGGCACGGCCGTCGCGGCGGCCGCCCGG
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