mRNA_P-wetherbeei_contig16798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16798.1.1
Unique NamemRNA_P-wetherbeei_contig16798.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: UPI001E38B012 (hypothetical protein n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E38B012)

HSP 1 Score: 170 bits (431), Expect = 1.210e-52
Identity = 94/120 (78.33%), Postives = 105/120 (87.50%), Query Frame = 1
Query:   10 ITTDD--EDLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSEQRTLH 363
            +T DD  EDLDP  EI LLEQRIEQLSD+LEGCRKFILAARIAM +GGA+L+AL+ G +RFDPL MSA +VGLIGGFVVSGSNRSTAQEAEAE+AASEARR ELI  +GLRVVSE+ TLH
Sbjct:    1 MTDDDREEDLDPHREIGLLEQRIEQLSDRLEGCRKFILAARIAMALGGAILVALILGLVRFDPLAMSAAVVGLIGGFVVSGSNRSTAQEAEAEIAASEARRTELISGMGLRVVSERPTLH 120          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A127ERK9_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ERK9_9HYPH)

HSP 1 Score: 103 bits (256), Expect = 4.780e-26
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 MDAITTDDEDLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSEQRTLH 363
            MD    DD +  P SEIA LEQ IE+L+ KLE CRK+  AA  AMG+G  LL A +FG I  DP+ + A    L+GG V++GSNRSTA+E +A+LA +E  R  LIG I LRVV+E+  LH
Sbjct:    1 MDQFAPDDSE--PHSEIARLEQLIEELTLKLETCRKYSGAALAAMGLGAVLLAAGIFGVIALDPVTLLAAAAALMGGIVLAGSNRSTAREIQAQLAEAEEERRGLIGRIQLRVVTERPVLH 119          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A537NIE2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NIE2_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 4.730e-20
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   34 DPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            D   +IA LE  IE+L++ ++ CRK IL +++AM +GG L++A L  AI FDP+ ++  I  +IGG VV GSN ST ++ EA   ++EA RAELI  I LRV+ +
Sbjct:    5 DLHEQIARLEVHIEELAEAIDRCRKIILVSKLAMAIGGILILATLVRAIGFDPVAVTVAIASMIGGTVVFGSNTSTRKQMEAAKQSAEAARAELISQIDLRVIGD 109          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A150U773_9BRAD (Uncharacterized protein n=82 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A150U773_9BRAD)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-18
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   34 DPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            DP  EI+ +E RIE+L++  E CRK+ILA++IA+G G ALL+  + G   F        I  ++GG V  GSN ST ++ +  ++A+EARRA LIGSI LRVV++
Sbjct:    5 DPTDEISDIEDRIERLAEVAERCRKYILASKIAIGGGAALLLVTILGVFGFGQTAALGSIALVLGGIVSLGSNVSTLRQTDEAISAAEARRAALIGSIDLRVVAD 109          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A1Y6KEQ0_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium sp. ORS 285 TaxID=115808 RepID=A0A1Y6KEQ0_9BRAD)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-18
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   22 DEDLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSEQRTL 360
            DED DP  +IAL+E RIEQL+D+ E CRK ILA++I +  G ALL+  + G    +   +   I  ++GG V  GSN ST ++  A +AA+E  R+ELIG I LR+V E R +
Sbjct:    3 DED-DPGGQIALIETRIEQLADRAERCRKIILASKIVISGGAALLVGAVLGLFGSNATGLLGAIAAVLGGIVSLGSNVSTLRQTLAAIAAAETLRSELIGRIDLRLVGEGRAV 114          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: UPI001BA48C80 (hypothetical protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BA48C80)

HSP 1 Score: 82.8 bits (203), Expect = 4.470e-18
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   46 EIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            EI+ +E RIE L++  E CRKFILA+++A+G GGALL+ ++FG      +     I  ++GG V  GSN ST Q+ EA + A+EARRA+LIG I LR+V +
Sbjct:    9 EISDIEARIEALAEIAERCRKFILASKVAIGGGGALLLLMVFGLFGAGQVAALGSIAMVLGGIVSLGSNVSTLQQTEAAIDAAEARRADLIGRIDLRLVDD 109          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A0R3BZM7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium yuanmingense TaxID=108015 RepID=A0A0R3BZM7_9BRAD)

HSP 1 Score: 82.4 bits (202), Expect = 6.320e-18
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   34 DPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            DP  EI+ +E+RIE+L++  E CRK+ILA++IA+  G ALL+  + G   F  +     I  ++GG V  GSN ST ++ +  ++A+EARRA LIGSI LRVV++
Sbjct:    5 DPVEEISDIEERIERLTEIAERCRKYILASKIAISGGAALLLVTILGVFGFGQIAALGSIALVLGGIVSLGSNISTLRQTDEAISAAEARRAALIGSIDLRVVAD 109          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: UPI001BAD1B2A (hypothetical protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BAD1B2A)

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-17
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   19 DDEDLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            D+ + DP   I+ LE RIE LS+  E CRKFILA++IA+G G ALL+ ++ G      +     I  ++GG V  GSN ST Q+ +A + A+EARRA+LIG I LRVV +
Sbjct:    6 DESEDDPADAISDLEARIEVLSEIAERCRKFILASKIAIGGGVALLLLMVLGLFGAGQVAALGSIALVLGGIVSLGSNVSTLQQTDAAIDAAEARRADLIGRIDLRVVDD 115          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A4Q0RD25_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q0RD25_9BRAD)

HSP 1 Score: 80.9 bits (198), Expect = 2.540e-17
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   28 DLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            D DP  EI+ +E RIE+L++  E CRK ILA++IA+G G ALL+  + G   F        I  ++GG V  GSN ST ++ +  +A +EARR+ LIGSI LRVV++
Sbjct:    3 DNDPTDEISDIEDRIERLAEIAERCRKIILASKIAIGGGAALLLVTILGLFGFGQTAALGAIALVLGGIVSLGSNISTLRQTDDAIAGAEARRSALIGSIDLRVVAD 109          
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Match: A0A0X8CJX5_9BRAD (Uncharacterized protein n=5 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0X8CJX5_9BRAD)

HSP 1 Score: 80.1 bits (196), Expect = 5.080e-17
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   34 DPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGALLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEARRAELIGSIGLRVVSE 348
            DP  EI+ +E RIE L++  E CRK+ILA++IA+G G ALL+  + G +          I  ++GG V  GSN ST ++ E  + A+EARR+ LIGSI LRVV++
Sbjct:    5 DPTDEISDIEDRIEALAEIAERCRKYILASKIAIGGGAALLVVTILGLLGTGQTAALGSIALVLGGIVSLGSNVSTLRQTEEAIGAAEARRSALIGSIDLRVVAD 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E38B0121.210e-5278.33hypothetical protein n=1 Tax=Leptospira sp. severe... [more]
A0A127ERK9_9HYPH4.780e-2652.89Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A537NIE2_9PROT4.730e-2046.67Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A150U773_9BRAD1.570e-1846.67Uncharacterized protein n=82 Tax=Bradyrhizobiaceae... [more]
A0A1Y6KEQ0_9BRAD2.170e-1846.02Uncharacterized protein n=2 Tax=Bradyrhizobium sp.... [more]
UPI001BA48C804.470e-1848.51hypothetical protein n=1 Tax=Bradyrhizobium liaoni... [more]
A0A0R3BZM7_9BRAD6.320e-1845.71Uncharacterized protein n=1 Tax=Bradyrhizobium yua... [more]
UPI001BAD1B2A2.100e-1747.27hypothetical protein n=1 Tax=Bradyrhizobium manaus... [more]
A0A4Q0RD25_9BRAD2.540e-1745.79Uncharacterized protein n=3 Tax=Bradyrhizobium Tax... [more]
A0A0X8CJX5_9BRAD5.080e-1745.71Uncharacterized protein n=5 Tax=unclassified Brady... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16798contigP-wetherbeei_contig16798:344..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1304877.KI519399_gene5874
Model size366
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.19e-20
EggNOG OGs2CIJJ@1|root,33GFX@2|Bacteria,1RJ9J@1224|Proteobacteria,2U9V7@28211|Alphaproteobacteria,3JZNN@41294|Bradyrhizobiaceae
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186097.808018-CDS-P-wetherbeei_contig16798:343..7091683186097.808018-CDS-P-wetherbeei_contig16798:343..709Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16798 344..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16798.1.1prot_P-wetherbeei_contig16798.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16798 344..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16798.1.1

>prot_P-wetherbeei_contig16798.1.1 ID=prot_P-wetherbeei_contig16798.1.1|Name=mRNA_P-wetherbeei_contig16798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MDAITTDDEDLDPRSEIALLEQRIEQLSDKLEGCRKFILAARIAMGVGGA
LLIALLFGAIRFDPLPMSAGIVGLIGGFVVSGSNRSTAQEAEAELAASEA
RRAELIGSIGLRVVSEQRTLH*
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mRNA from alignment at P-wetherbeei_contig16798:344..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16798.1.1 ID=mRNA_P-wetherbeei_contig16798.1.1|Name=mRNA_P-wetherbeei_contig16798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig16798:344..709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCATCACGACCGACGACGAAGACCTCGACCCCCGCAGCGAGAT CGCGCTGCTCGAACAGCGCATCGAGCAGCTTTCCGACAAGCTCGAGGGCT GCCGGAAGTTCATCCTCGCGGCGCGGATCGCGATGGGCGTCGGCGGCGCG CTGCTGATCGCATTGCTGTTCGGCGCGATCCGGTTCGATCCGCTGCCGAT GAGCGCGGGGATCGTCGGCCTGATTGGCGGGTTCGTCGTCTCGGGTTCGA ACCGCAGCACCGCGCAGGAGGCCGAAGCTGAACTCGCCGCTTCCGAGGCC CGCCGCGCGGAGCTGATCGGTTCGATCGGGCTTCGCGTCGTCAGCGAGCA GCGGACGCTGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16798:344..709+

>mRNA_P-wetherbeei_contig16798.1.1 ID=mRNA_P-wetherbeei_contig16798.1.1|Name=mRNA_P-wetherbeei_contig16798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig16798:344..709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCATCACGACCGACGACGAAGACCTCGACCCCCGCAGCGAGAT
CGCGCTGCTCGAACAGCGCATCGAGCAGCTTTCCGACAAGCTCGAGGGCT
GCCGGAAGTTCATCCTCGCGGCGCGGATCGCGATGGGCGTCGGCGGCGCG
CTGCTGATCGCATTGCTGTTCGGCGCGATCCGGTTCGATCCGCTGCCGAT
GAGCGCGGGGATCGTCGGCCTGATTGGCGGGTTCGTCGTCTCGGGTTCGA
ACCGCAGCACCGCGCAGGAGGCCGAAGCTGAACTCGCCGCTTCCGAGGCC
CGCCGCGCGGAGCTGATCGGTTCGATCGGGCTTCGCGTCGTCAGCGAGCA
GCGGACGCTGCACTGA
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