mRNA_P-wetherbeei_contig16770.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16770.1.1
Unique NamemRNA_P-wetherbeei_contig16770.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A418C2Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C2Z9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.360e-19
Identity = 42/51 (82.35%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +++LQ+IKLTEKDFLRTLEN+IRYGMPVLLENV EEL+P+LEPVLLKQVF+
Sbjct:  727 TSNLQIIKLTEKDFLRTLENAIRYGMPVLLENVEEELDPSLEPVLLKQVFK 777
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A485KXX8_9STRA (Aste57867_13359 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KXX8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.360e-19
Identity = 42/51 (82.35%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +++LQ+IKLTEKDFLRTLEN+IRYGMPVLLENV EEL+P+LEPVLLKQVF+
Sbjct: 3071 TSNLQIIKLTEKDFLRTLENAIRYGMPVLLENVEEELDPSLEPVLLKQVFK 3121
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A482RX74_9ARCH (AAA_9 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX74_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 1.610e-19
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQV 147
            S +LQ+IKLTEKDFLRTLEN IRYG PVLLENV +EL+P+LEPVLLKQV
Sbjct:    4 SKNLQIIKLTEKDFLRTLENGIRYGAPVLLENVGQELDPSLEPVLLKQV 52
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A024U9I2_9STRA (Uncharacterized protein n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9I2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.540e-19
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    7 SLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +LQ+IKLTEKDFLRTLEN+IRYGMPVLLENV EEL+P+LEPVLLKQVF+
Sbjct: 3047 NLQIIKLTEKDFLRTLENAIRYGMPVLLENVEEELDPSLEPVLLKQVFK 3095
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A1Z9QCI5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCI5_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 3.470e-19
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    4 ASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFRS 156
            A+LQ+IKLTEKDFLRTLEN+IRYG PVLLENV EEL+P+LEPVLLKQVF+ 
Sbjct: 2914 ANLQIIKLTEKDFLRTLENAIRYGAPVLLENVEEELDPSLEPVLLKQVFKK 2964
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A067CA36_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CA36_SAPPC)

HSP 1 Score: 88.2 bits (217), Expect = 4.730e-19
Identity = 41/51 (80.39%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +++LQ+IKL+EKDFLRTLEN+IRYGMPVLLENV EEL+P+LEPVLLKQVF+
Sbjct:   42 TSNLQIIKLSEKDFLRTLENAIRYGMPVLLENVEEELDPSLEPVLLKQVFK 92
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: T0RHI9_SAPDV (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0RHI9_SAPDV)

HSP 1 Score: 88.2 bits (217), Expect = 4.740e-19
Identity = 41/51 (80.39%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +++LQ+IKL+EKDFLRTLEN+IRYGMPVLLENV EEL+P+LEPVLLKQVF+
Sbjct: 3024 TSNLQIIKLSEKDFLRTLENAIRYGMPVLLENVEEELDPSLEPVLLKQVFK 3074
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A7S2F9G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9G5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.700e-19
Identity = 38/49 (77.55%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    7 SLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            +LQ+IKL++KDFLRTLEN IRYG PV+LENV+EEL+PALEPVLLKQ+F+
Sbjct:   12 NLQIIKLSQKDFLRTLENGIRYGAPVMLENVQEELDPALEPVLLKQIFK 60
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A8K1CJE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJE7_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 2.250e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            S SLQ+IKLT+KDFLRTLEN+IRYG PVLLENV E+L+P+LEPVLLKQVF+
Sbjct: 2325 SNSLQIIKLTQKDFLRTLENAIRYGAPVLLENVEEDLDPSLEPVLLKQVFK 2375
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BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Match: A0A6H5KIA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.200e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 ASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVFR 153
            A+LQVIKLTEK FLRTLEN IRYG PVLLENV+EEL+P LEPVLLKQVF+
Sbjct: 2649 ANLQVIKLTEKAFLRTLENGIRYGAPVLLENVKEELDPGLEPVLLKQVFK 2698
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A418C2Z9_9STRA1.360e-1982.35Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485KXX8_9STRA1.360e-1982.35Aste57867_13359 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A482RX74_9ARCH1.610e-1981.63AAA_9 domain-containing protein n=1 Tax=archaeon T... [more]
A0A024U9I2_9STRA2.540e-1985.71Uncharacterized protein n=15 Tax=Aphanomyces TaxID... [more]
A0A1Z9QCI5_9BACT3.470e-1982.35Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A067CA36_SAPPC4.730e-1980.39Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0RHI9_SAPDV4.740e-1980.39Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S2F9G5_9STRA5.700e-1977.55Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8K1CJE7_PYTOL2.250e-1880.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5KIA4_9PHAE4.200e-1884.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16770contigP-wetherbeei_contig16770:905..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008868888.1
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.17e-20
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size165
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.9911652-CDS-P-wetherbeei_contig16770:904..10691683186096.9911652-CDS-P-wetherbeei_contig16770:904..1069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16770 905..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16770.1.1prot_P-wetherbeei_contig16770.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16770 905..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16770.1.1

>prot_P-wetherbeei_contig16770.1.1 ID=prot_P-wetherbeei_contig16770.1.1|Name=mRNA_P-wetherbeei_contig16770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
SASLQVIKLTEKDFLRTLENSIRYGMPVLLENVREELEPALEPVLLKQVF
RSVL*
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mRNA from alignment at P-wetherbeei_contig16770:905..1069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16770.1.1 ID=mRNA_P-wetherbeei_contig16770.1.1|Name=mRNA_P-wetherbeei_contig16770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig16770:905..1069+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCTCTCTGCAGGTGATCAAGCTGACAGAGAAGGACTTCCTGCGAAC
ACTGGAGAACAGTATCCGCTACGGCATGCCGGTGCTGCTCGAGAACGTCA
GGGAGGAGCTCGAACCTGCCCTCGAGCCCGTCCTTCTAAAGCAGGTTTTC
AGGTCAGTCCTATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16770:905..1069+

>mRNA_P-wetherbeei_contig16770.1.1 ID=mRNA_P-wetherbeei_contig16770.1.1|Name=mRNA_P-wetherbeei_contig16770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig16770:905..1069+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCTCTCTGCAGGTGATCAAGCTGACAGAGAAGGACTTCCTGCGAAC
ACTGGAGAACAGTATCCGCTACGGCATGCCGGTGCTGCTCGAGAACGTCA
GGGAGGAGCTCGAACCTGCCCTCGAGCCCGTCCTTCTAAAGCAGGTTTTC
AGGTCAGTCCTATAA
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