mRNA_P-wetherbeei_contig16762.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16762.3.1
Unique NamemRNA_P-wetherbeei_contig16762.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A077ZLA3_TRITR (Uncharacterized protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZLA3_TRITR)

HSP 1 Score: 152 bits (383), Expect = 1.110e-42
Identity = 97/197 (49.24%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 LISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGL--SNSISLSRCWRQWGSXXXX----------------VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRKVPLLPKLRGQFA 537
            +IS   EP+  RLRY LGGDRPSQT R   SP Q+H  RL+ ++ KGGI  V P +LTP    LPPIL+++  I L+       G+    +IS  R  RQ  +                    VIVTAAV+WGFDS LA LLLTFQHRAGVS YTSS++ A+ CVF KQ   P LC   + A    PLLPKLRGQFA
Sbjct:    1 MISIHAEPSFERLRYFLGGDRPSQTARLTVSPDQIHGRRLETQQSKGGIPRVTPQKLTPLFLSLPPILYMNYRISLR-----VTGIFTGTTISPGRLLRQCPNRYAIRAGQNLPDKEFRYLRTVIVTAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGA----PLLPKLRGQFA 188          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: Q3BKH9_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKH9_9PROT)

HSP 1 Score: 135 bits (341), Expect = 1.210e-37
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 LISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLS 261
            LISDQLE TIARLRYSLGGDRPSQTT HAGS  + H +RLD R++KGGIS + P QL P  H LPPILHIHSL+PLQSCSKGARGLS
Sbjct:   62 LISDQLELTIARLRYSLGGDRPSQTTHHAGSRARFHGSRLDTRKQKGGISRMAPHQLAPMFHSLPPILHIHSLVPLQSCSKGARGLS 148          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: C7H9G6_FAEPA (Uncharacterized protein (Fragment) n=10 Tax=Eubacteriales TaxID=186802 RepID=C7H9G6_FAEPA)

HSP 1 Score: 138 bits (348), Expect = 4.760e-37
Identity = 95/206 (46.12%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    1 LISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLS-----------NSISLSRCWRQWGSXXXX----------------VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRKVPLLPKLRGQFA 537
            LIS Q E T  RLRYSLGGDRPSQT     SP  + + RL+ + RK GI    P +  P   R+P IL +    P+   SK   GLS            +IS     RQ  +                    VIVTAAV+WGFDS LA LLLTFQHRAGVS YTSS++ A+ CVF KQ   P LC   + A    PLLPKLRGQFA
Sbjct:   22 LISVQAERTSERLRYSLGGDRPSQTAHLTMSPDSIQSRRLEFQYRKDGIPTASPPKPKPWFPRVPSILCMQHRNPILGYSKAPWGLSVLSRVTGIFTGTTISPGGLLRQCPNHYAFHAGQNLPDKEFRYLRTVIVTAAVHWGFDSMLAHLLLTFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGA----PLLPKLRGQFA 223          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 137 bits (346), Expect = 8.240e-36
Identity = 92/185 (49.73%), Postives = 101/185 (54.59%), Query Frame = 1
Query:    4 ISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELH-------RLPPILHIHSLIPLQSCSKGARGLSNSISLSRCWRQWGSXXXXVIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRKVPLLPKLRGQFA 537
            ISD+ EPTIARLRYS GGDRPSQTT H  S       R+ + +R    S   PS     L        +   I+ +H      +   G           R           VIVTAAVYWGFDS LA LLLTFQHRAGV PYTSS +FAE CVF KQS PPGLCH   LA   V LLPKLR QFA
Sbjct:   56 ISDRSEPTIARLRYSFGGDRPSQTTHHTLS-------RIRMTDRGWLHSNWRPSFKAYHLSYTCRHECQCKAIVKVHGRGSRYAIRAGRNLPDKEFRYLRT----------VIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFA 223          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A8D8MY37_CULPI (Uncharacterized protein ORF91 n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8MY37_CULPI)

HSP 1 Score: 126 bits (317), Expect = 2.010e-33
Identity = 79/156 (50.64%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  106 HAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLS-----------NSISLSRCWRQWGSXXXX----------------VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLA 492
            + + L+ +  KGGIS   P +L   L  LPPILHI +   + S SKG+RGLS           +SISLS  WRQ G                     VIVTAAVYWGF+S LA LLLTFQHRAGV PYTS+Y FAE+CVFSKQS  P LCHL  +A
Sbjct:   42 YGSTLEHQTLKGGISRSAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSELAPLLLTFQHRAGVRPYTSTYVFAESCVFSKQSLLPILCHLLIVA 197          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 132 bits (333), Expect = 1.280e-32
Identity = 84/174 (48.28%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    4 ISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLSNSISLSRCWRQWGSXXXX----------------VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCH 477
            ISD+ EPTIARLRYS GGDRPSQTT H  S  ++     + R   G                                        NSISLS CWRQ GS                    VIVTAAVYWGFDS LA LLLTFQHRAGV PYTSS +FAE CVF KQS PPGLCH
Sbjct:  377 ISDRSEPTIARLRYSFGGDRPSQTTHHTLS--RIRMTTAEPRIFTG----------------------------------------NSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCH 508          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A6A5L776_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL)

HSP 1 Score: 112 bits (281), Expect = 3.310e-28
Identity = 58/74 (78.38%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  316 VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRKVPLLPKLRGQFA 537
            VIVTAAVYWGFDS LA LLLTFQHRAGV PYTSS +FAE CVF KQS PPGLCH   LA   V LLPKLR QFA
Sbjct:   66 VIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFA 139          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: B0P655_9FIRM (Uncharacterized protein n=2 Tax=Anaerotruncus colihominis DSM 17241 TaxID=445972 RepID=B0P655_9FIRM)

HSP 1 Score: 111 bits (277), Expect = 9.800e-28
Identity = 73/170 (42.94%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    1 LISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGISPVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLS-----------NSISLSRCWRQWGSXXXX----------------VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFA 429
            ++S   EPT  RLRY  GGDRPSQT R   SP ++H  RL+ +  K GI    P+ L   L  LPPIL++    P+ SCSK   GLS            +IS     RQ                       VIVTAAVY GF+S L+ LLLTF+HRAGV+PYTSS++ A
Sbjct:    1 MVSVHAEPTFERLRYLFGGDRPSQTARLTLSPDRIHGRRLEFQHLKSGIPTPAPATLACCLLCLPPILYMKYRNPILSCSKAPWGLSVLSRVTGIFTGTTISPGGLLRQCPDRYTIRAGQNLPDKEFRYLRTVIVTAAVYRGFNSELSLLLLTFRHRAGVTPYTSSFDLA 170          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A7S3IBR0_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBR0_9CILI)

HSP 1 Score: 103 bits (258), Expect = 1.750e-25
Identity = 56/80 (70.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  316 VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRK------VPLLPKLRGQFA 537
            VIVTAAVYWGF+S LA LLLTFQHRAGV PYTSS +FAE CVFSKQS  P LC   T   RK       P LPKLRGQFA
Sbjct:   33 VIVTAAVYWGFNSELAPLLLTFQHRAGVRPYTSSCDFAEPCVFSKQSLSPSLCDHPTPTNRKSRRPKVAPHLPKLRGQFA 112          
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Match: A0A2S2NGY3_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA)

HSP 1 Score: 99.0 bits (245), Expect = 1.090e-23
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  316 VIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSKQSPPPGLCHLTTLARRKVPLLPKLRGQFA 537
            VIVTAAVY GF+S LA LLLTF+HRAGV PYTSS +FAE CVFSKQSPPPGLC    LA++   LL  LR  FA
Sbjct:   11 VIVTAAVYRGFNSELAPLLLTFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPRPLLAQKPGLLLANLRRYFA 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16762.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A077ZLA3_TRITR1.110e-4249.24Uncharacterized protein n=1 Tax=Trichuris trichiur... [more]
Q3BKH9_9PROT1.210e-3777.01Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
C7H9G6_FAEPA4.760e-3746.12Uncharacterized protein (Fragment) n=10 Tax=Eubact... [more]
A0A6A5KV19_LUPAL8.240e-3649.73Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A8D8MY37_CULPI2.010e-3350.64Uncharacterized protein ORF91 n=1 Tax=Culex pipien... [more]
A0A6A5L965_LUPAL1.280e-3248.28Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L776_LUPAL3.310e-2878.38Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
B0P655_9FIRM9.800e-2842.94Uncharacterized protein n=2 Tax=Anaerotruncus coli... [more]
A0A7S3IBR0_9CILI1.750e-2570.00Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A2S2NGY3_SCHGA1.090e-2370.27Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16762contigP-wetherbeei_contig16762:905..1477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog411483.FAEPRAA2165_02967
Model size540
Max annot lvl186801|Clostridia
Exons2
Evalue7.8e-38
EggNOG OGs2B9ZZ@1|root,323DM@2|Bacteria,1V6N4@1239|Firmicutes,24K1H@186801|Clostridia,3WJW5@541000|Ruminococcaceae
Descriptionnon supervised orthologous group
Cds size540
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.788702-CDS-P-wetherbeei_contig16762:904..11831683186096.788702-CDS-P-wetherbeei_contig16762:904..1183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16762 905..1183 -
1683186096.8011346-CDS-P-wetherbeei_contig16762:1216..14771683186096.8011346-CDS-P-wetherbeei_contig16762:1216..1477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16762 1217..1477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16762.3.1prot_P-wetherbeei_contig16762.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16762 905..1477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16762.3.1

>prot_P-wetherbeei_contig16762.3.1 ID=prot_P-wetherbeei_contig16762.3.1|Name=mRNA_P-wetherbeei_contig16762.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
LISDQLEPTIARLRYSLGGDRPSQTTRHAGSPPQVHAARLDIRERKGGIS
PVPPSQLTPELHRLPPILHIHSLIPLQSCSKGARGLSNSISLSRCWRQWG
SXXXXVIVTAAVYWGFDSSLAALLLTFQHRAGVSPYTSSYEFAEACVFSK
QSPPPGLCHLTTLARRKVPLLPKLRGQFA*
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mRNA from alignment at P-wetherbeei_contig16762:905..1477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16762.3.1 ID=mRNA_P-wetherbeei_contig16762.3.1|Name=mRNA_P-wetherbeei_contig16762.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig16762:905..1477- (Phaeothamnion wetherbeei SAG_119_79)
CTGATTTCCGACCAGCTTGAGCCCACCATCGCGCGCCTCCGTTACTCTTT GGGAGGCGACCGCCCCAGTCAAACTACCCGCCATGCAGGGTCCCCGCCGC AGGTTCATGCGGCAAGGTTAGATATCAGAGAACGTAAGGGCGGTATTTCA CCGGTGCCTCCATCCCAGCTGACGCCGGAACTTCACAGGCTCCCGCCTAT CCTACACATCCATTCCCTAATACCACTGCAAAGCTGTAGTAAAGGTGCAC GGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGAATTCA ATTTCGCTGAGCCGATGTTGGAGACAGTGGGGAAGTCANNNNNNNNNCGT TATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAAGCCTTGCAGCTC TCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACGTCCTCT TACGAGTTCGCAGAGGCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGG TCTGTGCCACCTCACAACGCTTGCGCGCCGCAAGGTCCCGCTTCTTCCGA AGTTACGCGGGCAATTTGCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16762:905..1477-

>mRNA_P-wetherbeei_contig16762.3.1 ID=mRNA_P-wetherbeei_contig16762.3.1|Name=mRNA_P-wetherbeei_contig16762.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig16762:905..1477- (Phaeothamnion wetherbeei SAG_119_79)
CTGATTTCCGACCAGCTTGAGCCCACCATCGCGCGCCTCCGTTACTCTTT
GGGAGGCGACCGCCCCAGTCAAACTACCCGCCATGCAGGGTCCCCGCCGC
AGGTTCATGCGGCAAGGTTAGATATCAGAGAACGTAAGGGCGGTATTTCA
CCGGTGCCTCCATCCCAGCTGACGCCGGAACTTCACAGGCTCCCGCCTAT
CCTACACATCCATTCCCTAATACCACTGCAAAGCTGTAGTAAAGGTGCAC
GGGGTCTTTCCAATTCAATTTCGCTGAGCCGATGTTGGAGACAGTGGGGA
AGTCANNNNNNNNNCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGA
TTCAAGCCTTGCAGCTCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA
GCCCCTATACGTCCTCTTACGAGTTCGCAGAGGCCTGTGTTTTTAGTAAA
CAGTCGCCACCCCCTGGTCTGTGCCACCTCACAACGCTTGCGCGCCGCAA
GGTCCCGCTTCTTCCGAAGTTACGCGGGCAATTTGCCTAG
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