mRNA_P-wetherbeei_contig16758.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16758.1.1
Unique NamemRNA_P-wetherbeei_contig16758.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A7C1TI88_9GAMM (Protein Smg homolog n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TI88_9GAMM)

HSP 1 Score: 116 bits (291), Expect = 2.510e-31
Identity = 51/94 (54.26%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ V+D+L+YLFE++++DD+E++TD + L++EL+ AGF AG++SKAFDWL+ LA  ++  DGL ++A  S R+YT +E  KLDAECRGF+ FL
Sbjct:    1 MKENVLDVLMYLFENYMNDDIEIDTDEESLRAELQQAGFQAGEISKAFDWLEALARQQSQPDGLALSAVASMRVYTDDEMEKLDAECRGFLLFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A523NP86_9PROT (Protein Smg homolog n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NP86_9PROT)

HSP 1 Score: 115 bits (287), Expect = 1.010e-30
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MKQTVIDILIYLFEH+  D++EL+ D+DR+KSEL DAGF   +++KAFDWLQ+LA +   S      + TS RIY+  EE KLDAECRGF++FL
Sbjct:    1 MKQTVIDILIYLFEHYDSDEIELDVDQDRVKSELSDAGFGGTEITKAFDWLQDLATTSELSVDTIAESATSVRIYSYAEEVKLDAECRGFIHFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A661BL32_9GAMM (Protein Smg homolog n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BL32_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 1.630e-24
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+TV+D+LIYLFE++ D+D ELE+D+  ++ EL +AGF   ++SKAF WL+ LA     S         STRIY  EE  +LD ECRGF+YFL
Sbjct:    1 MKETVLDVLIYLFENYFDEDSELESDQGTVRRELLEAGFPEAEISKAFGWLEGLAAGNEGSVSDSAKVRASTRIYAAEETGRLDLECRGFLYFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A7C1TMZ0_9GAMM (Protein Smg homolog n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TMZ0_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 2.630e-23
Identity = 44/94 (46.81%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ V+D+L+YLFE++++D++E++TD + L+ EL++AGF A ++SKAFDWL+ LA  +    GL      S R+YT  E+ KLD + RGF+ FL
Sbjct:    1 MKENVLDVLMYLFENYMNDEIEIDTDEESLRVELQEAGFQALEISKAFDWLEGLANLQESQPGLAPVNAASIRLYTAAEQEKLDRQSRGFILFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A6N1DT76_9GAMM (Protein Smg homolog n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DT76_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 2.700e-23
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELA-ISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ V+D+L+YLFE+++ DD+E + D+D L+ EL +AGF  G+++KAF WL+ LA ++    +G   A  T+TR+Y  +E  KLDA+CRGF+ FL
Sbjct:    1 MKENVLDLLMYLFENYMSDDVEFDPDQDALRVELLEAGFHQGEITKAFKWLEGLASLNDGSIEGRAPATTTATRVYARQECEKLDADCRGFLMFL 95
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A7K4DZT6_9EURY (DUF494 domain-containing protein n=1 Tax=Halobacteria archaeon TaxID=2670410 RepID=A0A7K4DZT6_9EURY)

HSP 1 Score: 95.5 bits (236), Expect = 5.270e-23
Identity = 44/94 (46.81%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ V+D+L+YLFE++++D++E +TD + LK EL++AGF   +++KAFDWL+ LA  +   D       TS R+YT EE+ KLD + RGF+ FL
Sbjct:    1 MKENVLDVLMYLFENYMNDEIEFDTDEESLKVELQEAGFQQIEIAKAFDWLEGLANLQGHPDXXXXXXXTSLRLYTSEEQDKLDLDSRGFLMFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A0F3IJZ8_9GAMM (Protein Smg homolog n=1 Tax=Methylocucumis oryzae TaxID=1632867 RepID=A0A0F3IJZ8_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 6.730e-23
Identity = 44/94 (46.81%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ + D+L+YLFE++++D++++  D D +KSEL +AGF++G+V+KAFDWL+ L+  RA +  +P     S RI+++EE+ KLD EC GF+ FL
Sbjct:    1 MKENIFDVLMYLFENYMEDEVDMLPDSDVIKSELEEAGFNSGEVNKAFDWLESLSWQRAITTTVP----NSFRIFSVEEKSKLDVECCGFIMFL 90
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A661BTZ4_9GAMM (Protein Smg homolog n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BTZ4_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 7.470e-23
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+TV+D+L+YLF+++ D+D++L  D+D L+ +L DAGF   +V KAFDWL+ELA  + +    P    +++RIY  +E  KLD ECRGF+ FL
Sbjct:    1 MKETVLDVLMYLFDNYEDEDVKLTPDQDALRDQLLDAGFAEREVGKAFDWLEELATQKDNHYPSPDTGTSASRIYHGKELEKLDTECRGFLLFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: A0A1G0K745_9GAMM (Protein Smg homolog n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1G0K745_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-22
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLP-VAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK++VID+L+YLF+++ ++D E+ TD+D LK EL++AGF  GQV+KAFDWL+ LA  + D  GL  +    + RI+  EE +KLD ECRGF+ FL
Sbjct:    1 MKESVIDVLMYLFDNYFEEDNEISTDQDSLKFELKNAGFGDGQVNKAFDWLEGLARCK-DLIGLDTLRGRKALRIFNTEEMKKLDTECRGFILFL 94
[Close]
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Match: H1G0C5_9GAMM (Protein Smg homolog n=4 Tax=Ectothiorhodospira TaxID=1051 RepID=H1G0C5_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-22
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDWLQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL 282
            MK+ V+D+L+YLFE+++DDD ELE DR++L+  L DAGF   ++ KAFDWL+ LA      D   V A ++ R+YT  E  ++DAE RGF+ FL
Sbjct:    1 MKENVLDVLMYLFENYIDDDTELEPDREQLQDLLLDAGFPVAEIHKAFDWLENLAAQ----DSQTVHAGSALRVYTKAEMNRMDAESRGFLLFL 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16758.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1TI88_9GAMM2.510e-3154.26Protein Smg homolog n=1 Tax=Gammaproteobacteria ba... [more]
A0A523NP86_9PROT1.010e-3060.64Protein Smg homolog n=2 Tax=Proteobacteria bacteri... [more]
A0A661BL32_9GAMM1.630e-2451.06Protein Smg homolog n=1 Tax=Gammaproteobacteria ba... [more]
A0A7C1TMZ0_9GAMM2.630e-2346.81Protein Smg homolog n=1 Tax=Gammaproteobacteria ba... [more]
A0A6N1DT76_9GAMM2.700e-2347.37Protein Smg homolog n=1 Tax=Ectothiorhodospiraceae... [more]
A0A7K4DZT6_9EURY5.270e-2346.81DUF494 domain-containing protein n=1 Tax=Halobacte... [more]
A0A0F3IJZ8_9GAMM6.730e-2346.81Protein Smg homolog n=1 Tax=Methylocucumis oryzae ... [more]
A0A661BTZ4_9GAMM7.470e-2347.87Protein Smg homolog n=2 Tax=Gammaproteobacteria ba... [more]
A0A1G0K745_9GAMM1.060e-2251.58Protein Smg homolog n=2 Tax=unclassified Gammaprot... [more]
H1G0C5_9GAMM1.350e-2248.94Protein Smg homolog n=4 Tax=Ectothiorhodospira Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16758contigP-wetherbeei_contig16758:2..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog519989.ECTPHS_01139
Preferred namesmg
PFAMsDUF494
Model size282
Max annot lvl135613|Chromatiales
KEGG koko:K03747
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.21e-23
EggNOG OGsCOG2922@1|root,COG2922@2|Bacteria,1RD5F@1224|Proteobacteria,1S43X@1236|Gammaproteobacteria,1WYZ6@135613|Chromatiales
DescriptionBelongs to the Smg family
Cds size282
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.549307-CDS-P-wetherbeei_contig16758:1..2831683186096.549307-CDS-P-wetherbeei_contig16758:1..283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16758 2..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16758.1.1prot_P-wetherbeei_contig16758.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16758 2..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16758.1.1

>prot_P-wetherbeei_contig16758.1.1 ID=prot_P-wetherbeei_contig16758.1.1|Name=mRNA_P-wetherbeei_contig16758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MKQTVIDILIYLFEHFVDDDLELETDRDRLKSELRDAGFDAGQVSKAFDW
LQELAISRADSDGLPVAAYTSTRIYTLEEERKLDAECRGFMYFL
back to top

mRNA from alignment at P-wetherbeei_contig16758:2..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16758.1.1 ID=mRNA_P-wetherbeei_contig16758.1.1|Name=mRNA_P-wetherbeei_contig16758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig16758:2..283- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCAGACAGTAATCGATATCCTGATCTACCTTTTCGAACATTTCGT
CGACGATGATCTGGAACTGGAAACCGATCGTGATCGGCTGAAGTCGGAAT
TGCGCGACGCCGGATTCGACGCCGGCCAGGTGAGCAAAGCCTTTGATTGG
TTACAGGAATTGGCCATCAGCCGCGCGGATTCCGATGGCCTGCCAGTCGC
CGCGTATACTTCCACACGCATCTACACGCTTGAAGAAGAGCGCAAACTCG
ACGCCGAGTGCCGAGGGTTCATGTACTTCCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16758:2..283-

>mRNA_P-wetherbeei_contig16758.1.1 ID=mRNA_P-wetherbeei_contig16758.1.1|Name=mRNA_P-wetherbeei_contig16758.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig16758:2..283- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCAGACAGTAATCGATATCCTGATCTACCTTTTCGAACATTTCGT
CGACGATGATCTGGAACTGGAAACCGATCGTGATCGGCTGAAGTCGGAAT
TGCGCGACGCCGGATTCGACGCCGGCCAGGTGAGCAAAGCCTTTGATTGG
TTACAGGAATTGGCCATCAGCCGCGCGGATTCCGATGGCCTGCCAGTCGC
CGCGTATACTTCCACACGCATCTACACGCTTGAAGAAGAGCGCAAACTCG
ACGCCGAGTGCCGAGGGTTCATGTACTTCCTC
back to top