mRNA_P-wetherbeei_contig16752.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16752.2.1
Unique NamemRNA_P-wetherbeei_contig16752.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16752.2.1 vs. uniprot
Match: A0A7X9AFR2_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFR2_9BURK)

HSP 1 Score: 196 bits (499), Expect = 9.440e-63
Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 LEPILRSFQFCDAVVPAQAGKLTCYGVFTDLFASTFPTTYPRFSIMTTWGCGKGFHIQVVKMFNPAKTMLLNQSPEMYFTLEDETQSVHVQVDVNQIVFTEPGSYFFQVFLDSRLVAEHRL 363
            +EP+LRS  FCDAVVP   GKLTCYG+FTDL+A  FP TYPRFS++TTW  GKGFH+QV+K+ N +KTM LNQSPEMYFTL D TQS HVQVDVNQ+VF EPG+Y FQVFLD RL+AEH L
Sbjct:    1 MEPVLRSLNFCDAVVPGNQGKLTCYGLFTDLWADRFPVTYPRFSVLTTWSQGKGFHVQVLKLLNSSKTMQLNQSPEMYFTLNDPTQSTHVQVDVNQVVFPEPGAYIFQVFLDGRLMAEHSL 121
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BLAST of mRNA_P-wetherbeei_contig16752.2.1 vs. uniprot
Match: A0A1E4F7H2_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4F7H2_9BACT)

HSP 1 Score: 192 bits (487), Expect = 5.240e-61
Identity = 86/125 (68.80%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:    1 LEPILRSFQFCDAVVPAQAGKLTCYGVFTDLFASTFPTTYPRFSIMTTWGCGKGFHIQVVKMFNPAKTMLLNQSPEMYFTLEDETQSVHVQVDVNQIVFTEPGSYFFQVFLDSRLVAEHRLNYHR 375
            +EP+LRSF FC++VVPA +GK+ CYG+F+DLFA  FP T PRFS++ +WG G+GF +QVVKM NPAKT LL+QSPEMYFTLEDE+QS HVQ+D+NQIVFTE GSY FQ+ L  R VAEHRLN H+
Sbjct:    1 MEPVLRSFLFCESVVPAPSGKMNCYGLFSDLFAGQFPFTQPRFSLLLSWGGGRGFQVQVVKMLNPAKTALLHQSPEMYFTLEDESQSAHVQIDMNQIVFTEAGSYIFQIMLHGRQVAEHRLNVHQ 125
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BLAST of mRNA_P-wetherbeei_contig16752.2.1 vs. uniprot
Match: A0A7Z9Q017_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9Q017_9BACT)

HSP 1 Score: 177 bits (449), Expect = 3.230e-55
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 LEPILRSFQFCDAVVPAQAGKLTCYGVFTDLFASTFPTTYPRFSIMTTWGCGKGFHIQVVKMFNPAKTMLLNQSPEMYFTLEDETQSVHVQVDVNQIVFTEPGSYFFQVFLDSRLVAEHRLN 366
            +EP+L+SF +CD++VPA  GKL  YG+FTDLFA+ FP TYP+FS+++TWG G GFH+Q +K+ NPA TM+L+QSPE+YFTLE E Q+VHVQ DVNQ+VFTEPG+Y FQV L  RL  EH L+
Sbjct:    1 MEPVLKSFLYCDSIVPAPDGKLNLYGLFTDLFAAKFPITYPKFSVLSTWGDGLGFHVQRIKVVNPANTMVLHQSPELYFTLESEEQTVHVQCDVNQMVFTEPGAYTFQVHLGGRLAYEHHLH 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16752.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X9AFR2_9BURK9.440e-6372.73Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A1E4F7H2_9BACT5.240e-6168.80Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
A0A7Z9Q017_9BACT3.230e-5563.93Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16752contigP-wetherbeei_contig16752:937..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size381
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186096.4581325-CDS-P-wetherbeei_contig16752:936..13171683186096.4581325-CDS-P-wetherbeei_contig16752:936..1317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16752 937..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16752.2.1prot_P-wetherbeei_contig16752.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16752 937..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16752.2.1

>prot_P-wetherbeei_contig16752.2.1 ID=prot_P-wetherbeei_contig16752.2.1|Name=mRNA_P-wetherbeei_contig16752.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
LEPILRSFQFCDAVVPAQAGKLTCYGVFTDLFASTFPTTYPRFSIMTTWG
CGKGFHIQVVKMFNPAKTMLLNQSPEMYFTLEDETQSVHVQVDVNQIVFT
EPGSYFFQVFLDSRLVAEHRLNYHRR*
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mRNA from alignment at P-wetherbeei_contig16752:937..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16752.2.1 ID=mRNA_P-wetherbeei_contig16752.2.1|Name=mRNA_P-wetherbeei_contig16752.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig16752:937..1317- (Phaeothamnion wetherbeei SAG_119_79)
TTGGAACCCATCCTTCGCAGTTTCCAGTTTTGCGACGCGGTAGTCCCTGC
CCAGGCCGGCAAACTCACCTGCTATGGCGTCTTTACCGACCTGTTTGCTT
CGACTTTCCCTACCACCTATCCACGCTTTTCCATCATGACCACCTGGGGC
TGCGGCAAAGGCTTCCATATCCAGGTCGTTAAGATGTTCAACCCAGCCAA
GACGATGCTCCTGAACCAATCCCCAGAGATGTATTTCACCCTGGAGGACG
AGACCCAGAGCGTCCACGTTCAAGTCGACGTGAATCAAATCGTTTTCACC
GAGCCGGGCTCTTACTTCTTCCAGGTTTTCCTGGACTCGCGCCTCGTCGC
AGAGCATCGTCTCAATTATCATCGCCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16752:937..1317-

>mRNA_P-wetherbeei_contig16752.2.1 ID=mRNA_P-wetherbeei_contig16752.2.1|Name=mRNA_P-wetherbeei_contig16752.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig16752:937..1317- (Phaeothamnion wetherbeei SAG_119_79)
TTGGAACCCATCCTTCGCAGTTTCCAGTTTTGCGACGCGGTAGTCCCTGC
CCAGGCCGGCAAACTCACCTGCTATGGCGTCTTTACCGACCTGTTTGCTT
CGACTTTCCCTACCACCTATCCACGCTTTTCCATCATGACCACCTGGGGC
TGCGGCAAAGGCTTCCATATCCAGGTCGTTAAGATGTTCAACCCAGCCAA
GACGATGCTCCTGAACCAATCCCCAGAGATGTATTTCACCCTGGAGGACG
AGACCCAGAGCGTCCACGTTCAAGTCGACGTGAATCAAATCGTTTTCACC
GAGCCGGGCTCTTACTTCTTCCAGGTTTTCCTGGACTCGCGCCTCGTCGC
AGAGCATCGTCTCAATTATCATCGCCGCTAG
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