prot_P-wetherbeei_contig16746.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig16746.1.1
Unique Nameprot_P-wetherbeei_contig16746.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length288
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16746.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 209..267
e-value: 7.4E-4
score: 19.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..28
e-value: 9.5E-5
score: 20.3
coord: 66..99
e-value: 6.7E-6
score: 23.9
coord: 30..63
e-value: 1.4E-6
score: 26.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..97
score: 9.470621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..27
score: 9.152743
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 28..62
score: 10.566751
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 11..117
e-value: 5.5E-8
score: 32.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..132
e-value: 5.2E-31
score: 110.2
coord: 178..283
e-value: 7.6E-14
score: 53.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..152
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 205..282
coord: 1..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16746contigP-wetherbeei_contig16746:339..1469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16746.1.1mRNA_P-wetherbeei_contig16746.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig16746 2..1489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig16746.1.1 ID=prot_P-wetherbeei_contig16746.1.1|Name=mRNA_P-wetherbeei_contig16746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MHALGKGGQWRRAVALLDEMRVNGLMPNHVAFTAAIGACSAAGRWREGLD
LLALMKAEGCSPTLMTFGTCIASCARAGESGAAIALLAEMRAAGLQPDVV
AFGAALHACARAATEDGVGVGGASGGSRVGGEEGEDDDDERGKGSGGKSE
REMAAGAAEATFAVATAAGSAAWDGHGASLPPGVFGVAPVMRASQRTSAA
VAAAAATALLEDMRAHDLRPNVVCWTNAIAAFGKAGDKGAVDGAVRAMAA
DGVVPDTRSLNAALAACERNGWWPEALALLRSGGTVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf