mRNA_P-wetherbeei_contig16707.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16707.1.1
Unique NamemRNA_P-wetherbeei_contig16707.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16707.1.1 vs. uniprot
Match: L0E0B4_THIND (Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) TaxID=1255043 RepID=L0E0B4_THIND)

HSP 1 Score: 57.0 bits (136), Expect = 2.750e-9
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 WIESLGTLRLLMMLTALACIVAAPFADGKAYVHDWRLLPSVIAPSV 138
            W++SLG LR L++L A   ++ AP A    ++HDWRLLPSV+AP+V
Sbjct:    4 WLQSLGVLRSLLLLAAAFVMLVAPLAYDGVHLHDWRLLPSVVAPAV 49
[Close]
BLAST of mRNA_P-wetherbeei_contig16707.1.1 vs. uniprot
Match: A0A1Z9UHP8_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UHP8_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 4.840e-7
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   16 GTLRLLMMLTALACIVAAPFADGKAYVHDWRLLPSVIAPSV 138
            G LRL ++   L  I+ + FADG  Y+HDWR++PSV+APS+
Sbjct:    8 GXLRLGLLAITLLVIMLSVFADGTTYMHDWRIVPSVLAPSI 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L0E0B4_THIND2.750e-952.17Uncharacterized protein n=1 Tax=Thioalkalivibrio n... [more]
A0A1Z9UHP8_9GAMM4.840e-751.22Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16707contigP-wetherbeei_contig16707:1..138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size138
Hectar predicted targeting categorysignal peptide
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186095.1385176-CDS-P-wetherbeei_contig16707:0..1381683186095.1385176-CDS-P-wetherbeei_contig16707:0..138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16707 1..138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16707.1.1prot_P-wetherbeei_contig16707.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16707 1..138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16707.1.1

>prot_P-wetherbeei_contig16707.1.1 ID=prot_P-wetherbeei_contig16707.1.1|Name=mRNA_P-wetherbeei_contig16707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
WIESLGTLRLLMMLTALACIVAAPFADGKAYVHDWRLLPSVIAPSV
back to top

mRNA from alignment at P-wetherbeei_contig16707:1..138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16707.1.1 ID=mRNA_P-wetherbeei_contig16707.1.1|Name=mRNA_P-wetherbeei_contig16707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig16707:1..138- (Phaeothamnion wetherbeei SAG_119_79)
TGGATTGAGAGTCTAGGCACTTTACGCCTGTTGATGATGCTCACCGCGCT
GGCTTGTATCGTGGCGGCGCCCTTCGCCGACGGTAAGGCCTATGTGCATG
ACTGGCGCCTGCTGCCGTCGGTGATCGCGCCCTCGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16707:1..138-

>mRNA_P-wetherbeei_contig16707.1.1 ID=mRNA_P-wetherbeei_contig16707.1.1|Name=mRNA_P-wetherbeei_contig16707.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig16707:1..138- (Phaeothamnion wetherbeei SAG_119_79)
TGGATTGAGAGTCTAGGCACTTTACGCCTGTTGATGATGCTCACCGCGCT
GGCTTGTATCGTGGCGGCGCCCTTCGCCGACGGTAAGGCCTATGTGCATG
ACTGGCGCCTGCTGCCGTCGGTGATCGCGCCCTCGGTG
back to top