mRNA_P-wetherbeei_contig16695.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16695.1.1
Unique NamemRNA_P-wetherbeei_contig16695.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16695.1.1 vs. uniprot
Match: A0A1Q7T1D7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium 13_1_20CM_58_21 TaxID=1803438 RepID=A0A1Q7T1D7_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 6.690e-5
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 1 
Query:   10 ALRLWSELLGQHPDRWAARLARGVLLFKKGQLEPSQADLQAYVGAQPDSSIGHFDLAMVFLQRSRVENSERYLQQGKRELDEALRLNPQFEAAQKLRAQLGG 315
            A+  ++E L   PD   AR  RG    + G+++    DL  YV   P   +GHF+L +       + ++ +  QQ    LDEALR+NP F +A++ R  L G
Sbjct:  297 AVDAYNEYLKLQPDDHTARRERGFTSCRLGRMKTGLPDLDWYVKQYPRDPVGHFELGLC----ETLGDTAQAFQQ----LDEALRVNPDFTSARQARGWLLG 390
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Q7T1D7_9BACT6.690e-533.33Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16695contigP-wetherbeei_contig16695:427..744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog33898.JRHJ01000038_gene4424
PFAMsTPR_14,TPR_16,TPR_17,TPR_19,TPR_2
Model size318
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.51e-08
EggNOG OGsCOG4783@1|root,COG4783@2|Bacteria,2IHNP@201174|Actinobacteria
DescriptionTetratricopeptide repeat
Cds size318
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.6003227-CDS-P-wetherbeei_contig16695:426..7441683186094.6003227-CDS-P-wetherbeei_contig16695:426..744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16695 427..744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16695.1.1prot_P-wetherbeei_contig16695.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16695 427..744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16695.1.1

>prot_P-wetherbeei_contig16695.1.1 ID=prot_P-wetherbeei_contig16695.1.1|Name=mRNA_P-wetherbeei_contig16695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
PEVALRLWSELLGQHPDRWAARLARGVLLFKKGQLEPSQADLQAYVGAQP
DSSIGHFDLAMVFLQRSRVENSERYLQQGKRELDEALRLNPQFEAAQKLR
AQLGG*
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mRNA from alignment at P-wetherbeei_contig16695:427..744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16695.1.1 ID=mRNA_P-wetherbeei_contig16695.1.1|Name=mRNA_P-wetherbeei_contig16695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig16695:427..744- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAAGTCGCCTTGCGGCTCTGGAGCGAGCTCCTGGGCCAGCACCCCGA
CCGCTGGGCGGCTCGTTTAGCGCGCGGCGTTCTGCTCTTCAAAAAAGGGC
AACTCGAGCCGAGCCAGGCCGATTTACAGGCCTATGTCGGTGCCCAGCCG
GACTCCTCGATTGGCCACTTTGACCTGGCAATGGTCTTCCTGCAACGCTC
ACGAGTGGAAAACAGCGAGCGGTATCTCCAGCAGGGGAAGCGTGAGCTCG
ATGAGGCTCTGCGCCTCAACCCGCAATTTGAAGCGGCGCAGAAACTGCGC
GCTCAGCTGGGCGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16695:427..744-

>mRNA_P-wetherbeei_contig16695.1.1 ID=mRNA_P-wetherbeei_contig16695.1.1|Name=mRNA_P-wetherbeei_contig16695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig16695:427..744- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAAGTCGCCTTGCGGCTCTGGAGCGAGCTCCTGGGCCAGCACCCCGA
CCGCTGGGCGGCTCGTTTAGCGCGCGGCGTTCTGCTCTTCAAAAAAGGGC
AACTCGAGCCGAGCCAGGCCGATTTACAGGCCTATGTCGGTGCCCAGCCG
GACTCCTCGATTGGCCACTTTGACCTGGCAATGGTCTTCCTGCAACGCTC
ACGAGTGGAAAACAGCGAGCGGTATCTCCAGCAGGGGAAGCGTGAGCTCG
ATGAGGCTCTGCGCCTCAACCCGCAATTTGAAGCGGCGCAGAAACTGCGC
GCTCAGCTGGGCGGGTAG
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