mRNA_P-wetherbeei_contig16693.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16693.1.1
Unique NamemRNA_P-wetherbeei_contig16693.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16693contigP-wetherbeei_contig16693:96..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1039
Hectar predicted targeting categoryother localisation
Exons1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.5286102-CDS-P-wetherbeei_contig16693:95..10011683186094.5286102-CDS-P-wetherbeei_contig16693:95..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16693 96..1001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.5384483-UTR-P-wetherbeei_contig16693:1001..11331683186094.5384483-UTR-P-wetherbeei_contig16693:1001..1133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16693 1002..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16693.1.1prot_P-wetherbeei_contig16693.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16693 96..1001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16693.1.1

>prot_P-wetherbeei_contig16693.1.1 ID=prot_P-wetherbeei_contig16693.1.1|Name=mRNA_P-wetherbeei_contig16693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=302bp
MELPLDVPPDGAHPENGIENEMPRGQDYANLSAASEASAAEPASASAEVP
APARQERGRSRAATPVRSAPASARINALYSDAGERRERLQRKINAATPVS
TFTPEITDRARRRSSSAARLYDRAHQEERKRELEAKRMAQETSECTFTPQ
VNPSGPRRSSSAVRLRPSSQGAAAAAASPSAAAAPADATRARPTSARLNG
HSRGGSAAAAAVNGGAASNGGTATPPVNGEPAATATTAASATAPSAEKGH
GSAYKRLYEAQREREVRLARLDAERRQVEAAQCTFRPDISATAGRSASAQ
KQ
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mRNA from alignment at P-wetherbeei_contig16693:96..1133-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16693.1.1 ID=mRNA_P-wetherbeei_contig16693.1.1|Name=mRNA_P-wetherbeei_contig16693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1038bp|location=Sequence derived from alignment at P-wetherbeei_contig16693:96..1133- (Phaeothamnion wetherbeei SAG_119_79)
GCTCTCCGACCAGCCTTTCGACTGTCCGAGATTGTTGCATTGGCGAAAGA
GAGGCTTCTGCACGTTCTTCAGGTCCAATTGCTTTTTTGGAAAGCGGCAA
TAAACCTCAACGCTTTGGGGAAAAGGTAACATATGGAGCTCCCTCTCGAT
GTTCCTCCCGATGGGGCTCACCCCGAGAATGGCATTGAGAACGAAATGCC
GCGTGGGCAAGACTACGCCAATCTGAGCGCTGCCAGCGAAGCCTCGGCTG
CGGAACCGGCATCTGCATCTGCAGAGGTGCCTGCGCCGGCACGGCAGGAA
CGCGGTCGCAGTCGTGCCGCCACCCCCGTTCGTTCTGCGCCGGCGTCGGC
ACGCATCAATGCCCTGTACAGCGATGCCGGAGAGAGGCGCGAGCGACTGC
AAAGGAAAATCAACGCGGCGACACCTGTCTCGACGTTCACGCCAGAGATC
ACCGACCGCGCTCGCCGCCGGAGCAGTTCGGCGGCGCGCCTCTACGACAG
GGCGCACCAGGAAGAGAGAAAGCGGGAGCTCGAAGCCAAGAGGATGGCGC
AGGAGACCTCCGAGTGCACCTTTACGCCGCAGGTTAACCCCTCGGGACCG
CGCCGCAGCTCGTCGGCGGTGCGGCTGCGTCCCAGCAGCCAAGGCGCTGC
CGCCGCTGCCGCCAGCCCTTCTGCCGCTGCAGCCCCGGCCGATGCCACCC
GCGCCCGCCCGACCTCGGCGCGCCTCAACGGTCATTCCCGCGGCGGCTCC
GCGGCCGCGGCGGCAGTAAACGGTGGGGCGGCGTCGAACGGCGGCACGGC
GACGCCGCCCGTCAACGGCGAGCCGGCGGCGACAGCCACCACAGCGGCAT
CGGCGACGGCGCCGTCAGCAGAGAAGGGCCACGGGTCGGCCTACAAGCGG
CTGTACGAGGCGCAGCGCGAACGGGAGGTGCGTCTCGCGCGGCTCGACGC
CGAGCGGCGCCAGGTCGAAGCCGCGCAGTGCACGTTCCGCCCCGATATTA
GTGCCACCGCCGGCCGCAGCGCATCGGCGCAAAAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16693:96..1133-

>mRNA_P-wetherbeei_contig16693.1.1 ID=mRNA_P-wetherbeei_contig16693.1.1|Name=mRNA_P-wetherbeei_contig16693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig16693:96..1133- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTCCCTCTCGATGTTCCTCCCGATGGGGCTCACCCCGAGAATGG
CATTGAGAACGAAATGCCGCGTGGGCAAGACTACGCCAATCTGAGCGCTG
CCAGCGAAGCCTCGGCTGCGGAACCGGCATCTGCATCTGCAGAGGTGCCT
GCGCCGGCACGGCAGGAACGCGGTCGCAGTCGTGCCGCCACCCCCGTTCG
TTCTGCGCCGGCGTCGGCACGCATCAATGCCCTGTACAGCGATGCCGGAG
AGAGGCGCGAGCGACTGCAAAGGAAAATCAACGCGGCGACACCTGTCTCG
ACGTTCACGCCAGAGATCACCGACCGCGCTCGCCGCCGGAGCAGTTCGGC
GGCGCGCCTCTACGACAGGGCGCACCAGGAAGAGAGAAAGCGGGAGCTCG
AAGCCAAGAGGATGGCGCAGGAGACCTCCGAGTGCACCTTTACGCCGCAG
GTTAACCCCTCGGGACCGCGCCGCAGCTCGTCGGCGGTGCGGCTGCGTCC
CAGCAGCCAAGGCGCTGCCGCCGCTGCCGCCAGCCCTTCTGCCGCTGCAG
CCCCGGCCGATGCCACCCGCGCCCGCCCGACCTCGGCGCGCCTCAACGGT
CATTCCCGCGGCGGCTCCGCGGCCGCGGCGGCAGTAAACGGTGGGGCGGC
GTCGAACGGCGGCACGGCGACGCCGCCCGTCAACGGCGAGCCGGCGGCGA
CAGCCACCACAGCGGCATCGGCGACGGCGCCGTCAGCAGAGAAGGGCCAC
GGGTCGGCCTACAAGCGGCTGTACGAGGCGCAGCGCGAACGGGAGGTGCG
TCTCGCGCGGCTCGACGCCGAGCGGCGCCAGGTCGAAGCCGCGCAGTGCA
CGTTCCGCCCCGATATTAGTGCCACCGCCGGCCGCAGCGCATCGGCGCAA
AAGCAG
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