mRNA_P-wetherbeei_contig16687.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16687.1.1
Unique NamemRNA_P-wetherbeei_contig16687.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.350e-32
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            LRPG+  P NVLLVRV NI YPV LDALH IF RFG V+KVV+FDKGSGFQALVQ  S   A+ AFD+ D Q+MY  CN +RVGYS+L
Sbjct:   57 LRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNL 144          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.080e-29
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSLK 267
            LRPG ++P NVLLVRV +I++PVT+ AL QIF RFG V+K+VMFDKGSG QALVQM +   A +A +AAD QEMY+GCNL+RVGYS+L+
Sbjct:   33 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQ 121          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 108 bits (269), Expect = 1.120e-25
Identity = 53/88 (60.23%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            LRPG   P NV LVR+ NI YP T+DALH IF RFG V K+V FDKGSG+QAL+Q  S   A  AF A D Q+MY  CN +RVG+S+L
Sbjct:   27 LRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNL 114          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 8.610e-23
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSS 261
            LRPGT EP NV+L R+ + L+PVTLDAL+ +F  +G V+K+VMF+KG+G QALVQ      A+AA++ AD + MY   NL+RVGYS+
Sbjct:  273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYST 359          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: L8HLM4_ACACA (HnRNPL/PTB/hephaestus splicing factor subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM4_ACACA)

HSP 1 Score: 89.0 bits (219), Expect = 1.020e-18
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            G ++  ++LLV V N++YPVT+D LHQ+F ++G + K+V+F K  GFQAL+QM    QA+AA  A D Q +Y+GC  LR+ YS+L
Sbjct:  200 GDEQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSK-KGFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNL 283          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.440e-18
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQ 216
            LRPG ++P NVLLVRV +I++PVT+ AL QIF RFG V+K+VMFDKGSG QALVQM +   A +A +AAD Q
Sbjct:   78 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0B7A9S1_9EUPU (RRM domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A9S1_9EUPU)

HSP 1 Score: 83.2 bits (204), Expect = 6.210e-18
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            G+ E   +L + V N LYPV+LD LHQ+F++FG V K++ F K + FQAL+QM     A AA  + D Q +Y GCN L++ YS L
Sbjct:   30 GSDEQSTILRIIVDNALYPVSLDILHQLFIKFGKVLKIITFTKNNTFQALIQMSDAISAAAAKTSLDGQNIYNGCNTLKIDYSKL 114          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0R3RNX6_9BILA (RRM domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RNX6_9BILA)

HSP 1 Score: 82.0 bits (201), Expect = 8.370e-18
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 KEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            ++P +VL V + N+LYPVTLD LHQIF R+G V +++ F+K + FQALVQ+     A+ A  + D Q +Y GC  LR+ YS L
Sbjct:   38 QQPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCCLRIDYSKL 120          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: A0A0M3IVI3_ASCLU (RRM domain-containing protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IVI3_ASCLU)

HSP 1 Score: 81.3 bits (199), Expect = 2.410e-17
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 KEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
            ++P +VL V + N+LYPVTLD LHQIF R+G V +++ F+K + FQALVQ+     A+ A  + D Q +Y GC  LR+ YS L
Sbjct:   42 QQPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEATSAQMARQSLDGQNVYNGCCCLRIDYSKL 124          
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Match: D3B4Z4_POLPP (RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B4Z4_POLPP)

HSP 1 Score: 83.6 bits (205), Expect = 7.320e-17
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   10 GTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGFQALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSL 264
              + P N+LLV + NI+YPVT+D L+Q+F ++G+V K+++F K   FQ+L+Q+H+T  A  A    D Q +Y GC  L++ YSSL
Sbjct:  131 SVETPNNILLVTISNIIYPVTIDVLYQLFSKYGSVLKILIFSKSGNFQSLIQLHTTDSAINAKRELDGQNIYNGCCTLKIQYSSL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16687.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XYL8_9STRA1.350e-3268.18Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KZ42_9PHAE3.080e-2966.29RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UWL0_HETAK1.120e-2560.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0W9_9STRA8.610e-2355.17RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
L8HLM4_ACACA1.020e-1849.41HnRNPL/PTB/hephaestus splicing factor subfamily pr... [more]
D7FN53_ECTSI1.440e-1863.89PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=... [more]
A0A0B7A9S1_9EUPU6.210e-1847.06RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A0R3RNX6_9BILA8.370e-1848.19RRM domain-containing protein n=1 Tax=Elaeophora e... [more]
A0A0M3IVI3_ASCLU2.410e-1748.19RRM domain-containing protein n=1 Tax=Ascaris lumb... [more]
D3B4Z4_POLPP7.320e-1744.71RNA-binding region RNP-1 domain-containing protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16687contigP-wetherbeei_contig16687:443..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN53
PFAMsRRM_1,RRM_5
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K13218,ko:K14948
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.36e-19
EggNOG OGsKOG1190@1|root,KOG1190@2759|Eukaryota
Descriptionregulation of secretory granule organization
Cds size267
COG categoryO
BRITEko00000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.3180056-CDS-P-wetherbeei_contig16687:442..5621683186094.3180056-CDS-P-wetherbeei_contig16687:442..562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16687 443..562 +
1683186094.3287854-CDS-P-wetherbeei_contig16687:926..10361683186094.3287854-CDS-P-wetherbeei_contig16687:926..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16687 927..1036 +
1683186094.338682-CDS-P-wetherbeei_contig16687:1457..14941683186094.338682-CDS-P-wetherbeei_contig16687:1457..1494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16687 1458..1494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16687.1.1prot_P-wetherbeei_contig16687.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16687 443..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16687.1.1

>prot_P-wetherbeei_contig16687.1.1 ID=prot_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
LRPGTKEPCNVLLVRVVNILYPVTLDALHQIFVRFGTVEKVVMFDKGSGF
QALVQMHSTGQARAAFDAADSQEMYAGCNLLRVGYSSLK
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mRNA from alignment at P-wetherbeei_contig16687:443..1494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16687.1.1 ID=mRNA_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1052bp|location=Sequence derived from alignment at P-wetherbeei_contig16687:443..1494+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGCCAGGCACAAAAGAACCCTGCAACGTGCTGCTGGTGCGCGTGGT CAACATCCTCTACCCCGTCACGCTCGACGCGCTGCACCAGATCTTCGTCC GCTTCGGAACCGTGGAAAAGGTGCGTTGTGCGCCGCGGAAGAGTCCTGAG AAGAGGGCGAAAATGAAATGAAGCAAACCAGAAGCAGGAGAGGACGCGTA ACTGTGTGGGGTTGATTCTGCTTGCCCCTGTCCGGGGGAAATCGGAATGT TGGAGAGTATCCTTCTTTCAGTCGCTTGTTGCTTCCTTCGTCTTTTGTGC GTGTCCTTCTCCTTAACCGTTCAGGTGTTATGTGCGGTTTTTGGTTTTGC CGTTCTGAGGTCTTGATTTTTGTGGGCAGCCGTTCATTCATACCGCTTGC CCCTCGAAAAAATCCATGCCAAAAACTGTTCTTCCGTGTTGCTGATCTGC ATGAAATTTAAGGAAACTGTCATTTCTGCAACAGGTGGTTATGTTTGACA AGGGGTCGGGCTTCCAGGCCTTGGTGCAGATGCACTCGACGGGACAGGCG CGGGCGGCGTTCGATGCCGCCGACTCGCAGGAGATGTATGCCGGGTGAGC GGCCTAACCATCCAGCCCGTTTGGGTGCCTTTCTTTTTCCGTGTGAGTTT CTGTATTGGGCTCCCTTTGAGGTGCAGGACGGATGGATGGCAAAAAGCGG ACGCCCTCTCGTTTTACCTCCTTGGGCGGCCGCCGATTCCGCAGCCAATA CTGTCGTCGGCGCTATTGCGGCGGCCGCCCCCGTCCGCCTGCGCCGTACT GCCGTTTGTGCTTCTTCTGATGGTTGCCGAAGCCGCCGTCGCCGAACGTG TCGAGTTTGGAAAGGAATGGCATCCGGGATCTGTCCGCCGGCCGGCTTCA CGAGAATTGTGTTGTCGGGATGCCAGTGCAGCGGGCATCCCTTTGTTGGT TCCTGCTTGAAGGAAATAGATCGACGGCAACCTTGAAACTATACGCACAC CCATGTTTCACTCAGGTGCAATTTGCTACGGGTGGGCTATAGCAGCCTGA AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16687:443..1494+

>mRNA_P-wetherbeei_contig16687.1.1 ID=mRNA_P-wetherbeei_contig16687.1.1|Name=mRNA_P-wetherbeei_contig16687.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16687:443..1494+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGCCAGGCACAAAAGAACCCTGCAACGTGCTGCTGGTGCGCGTGGT
CAACATCCTCTACCCCGTCACGCTCGACGCGCTGCACCAGATCTTCGTCC
GCTTCGGAACCGTGGAAAAGGTGGTTATGTTTGACAAGGGGTCGGGCTTC
CAGGCCTTGGTGCAGATGCACTCGACGGGACAGGCGCGGGCGGCGTTCGA
TGCCGCCGACTCGCAGGAGATGTATGCCGGGTGCAATTTGCTACGGGTGG
GCTATAGCAGCCTGAAA
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