prot_P-wetherbeei_contig16684.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig16684.1.1
Unique Nameprot_P-wetherbeei_contig16684.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length38
Homology
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BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.970e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 
Query:    4 QVNKHKRHLDMGASKEFWRLLDEFMLVHKSYLM 36
            ++NKHKRHLD GA  EFWRLLDEFML++K  +M
Sbjct:  437 EINKHKRHLDKGALLEFWRLLDEFMLLNKPEMM 469
[Close]
BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.080e-5
Identity = 17/33 (51.52%), Postives = 27/33 (81.82%), Query Frame = 0 
Query:    5 VNKHKRHLDMGASKEFWRLLDEFMLVHKSYLMR 37
            +NKHKR+LD GAS   WR++D+F+ VHK ++++
Sbjct:  451 INKHKRYLDKGASLALWRMIDDFVHVHKPHMIK 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK5_ECTSI3.970e-869.70RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA2.080e-551.52RNA pol II accessory factor, Cdc73 family protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16684contigP-wetherbeei_contig16684:836..949 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16684.1.1mRNA_P-wetherbeei_contig16684.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig16684 836..949 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig16684.1.1 ID=prot_P-wetherbeei_contig16684.1.1|Name=mRNA_P-wetherbeei_contig16684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=38bp
TAWQVNKHKRHLDMGASKEFWRLLDEFMLVHKSYLMR*
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