mRNA_P-wetherbeei_contig16677.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16677.1.1
Unique NamemRNA_P-wetherbeei_contig16677.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16677.1.1 vs. uniprot
Match: UPI001868CF92 (hypothetical protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI001868CF92)

HSP 1 Score: 119 bits (297), Expect = 1.900e-27
Identity = 85/239 (35.56%), Postives = 115/239 (48.12%), Query Frame = 1 
Query:   13 RRVAAFLFLAFHLYSGCIVGLWYTALMIPYLCAIFQDGFTRSLVEDAPQGRAGWRDYLGGLTLAAMLGTGTI-SLLIGGDVRLTGEGRAVALFMFDANHRTRVVLSVRDQEDHDWQFRLNWPWPDENFSAPCHMQI---VKDGRPQPVRATAV-----DG-AYIFNPALFRAFSVRIQNDPYCYYFWALRCQRLIHPKRIGIEIWSQLDGHEEEHKTVNVTDFAKEVEGYSLWHHNSWI 699
            R++    F+ FHLYSG IVG WYT LM+P + A FQ GF   L+     G    R +L      A+   G++   LI GDVR T EGR + LFMFDA H  R   ++ ++ D  W  ++   WP +   AP    I    ++G  QP++   V     DG   IFNP  F    +RI  DPY YY +     R  HP R+ + +  QLD   E    + + DF +    Y     N WI
Sbjct:  244 RQLTFAAFVLFHLYSGVIVGFWYTTLMLPLVLAAFQ-GFDEPLLA----GYRYTRRHLASFAHCAVALLGSLLHFLIPGDVRFTAEGRYLGLFMFDARHSVRFESTI-EKGDKRWIIQVFRDWPVKPGGAPVENWISCVFQEGN-QPLQQFEVTRPILDGDQIIFNPDYFNLARMRISGDPYLYYHYGRELVRRYHPDRLALVMEQQLDRKSETQTLLYLPDFTRLDPSYRPLRRNDWI 475
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BLAST of mRNA_P-wetherbeei_contig16677.1.1 vs. uniprot
Match: A0A2H0UJI3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_43_70 TaxID=1974605 RepID=A0A2H0UJI3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.940e-6
Identity = 34/99 (34.34%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:   13 RRVAAFLFLAFHLYSGCIVGLWYTALMIPYLCAIFQDGFTRSLVEDAPQGRAGWRDYLGGLTLAAMLGTGTISLLIGGDVRLTGEGRAVALFMFDANHR 309
            +R A   F+AFHLYSG +VG  Y   ++P +  +F   F  +          GW      + +  +    +IS+LI GDV++T EG    L+MF+ANH+
Sbjct:  239 QRTALVFFVAFHLYSGLLVGYRYPTTVLPSILILFGPMFKYTPPPPFRSSVLGW------ILVVLIFVAQSISILIPGDVKMTMEGNKYGLYMFEANHQ 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16677.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001868CF921.900e-2735.56hypothetical protein n=1 Tax=Luteolibacter sp. NBU... [more]
A0A2H0UJI3_9BACT2.940e-634.34Uncharacterized protein n=1 Tax=Candidatus Kaiserb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16677contigP-wetherbeei_contig16677:788..1495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size708
Hectar predicted targeting categorysignal anchor
Exons1
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.9082494-CDS-P-wetherbeei_contig16677:787..14951683186093.9082494-CDS-P-wetherbeei_contig16677:787..1495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16677 788..1495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16677.1.1prot_P-wetherbeei_contig16677.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16677 788..1495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16677.1.1

>prot_P-wetherbeei_contig16677.1.1 ID=prot_P-wetherbeei_contig16677.1.1|Name=mRNA_P-wetherbeei_contig16677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
KILHRRVAAFLFLAFHLYSGCIVGLWYTALMIPYLCAIFQDGFTRSLVED
APQGRAGWRDYLGGLTLAAMLGTGTISLLIGGDVRLTGEGRAVALFMFDA
NHRTRVVLSVRDQEDHDWQFRLNWPWPDENFSAPCHMQIVKDGRPQPVRA
TAVDGAYIFNPALFRAFSVRIQNDPYCYYFWALRCQRLIHPKRIGIEIWS
QLDGHEEEHKTVNVTDFAKEVEGYSLWHHNSWINP*
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mRNA from alignment at P-wetherbeei_contig16677:788..1495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16677.1.1 ID=mRNA_P-wetherbeei_contig16677.1.1|Name=mRNA_P-wetherbeei_contig16677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig16677:788..1495- (Phaeothamnion wetherbeei SAG_119_79)
AAAATCTTGCATCGGCGCGTAGCGGCCTTCCTCTTCCTGGCCTTCCATCT
GTATTCGGGTTGCATCGTTGGCTTGTGGTATACGGCCCTGATGATCCCCT
ATCTGTGCGCTATCTTCCAGGACGGGTTTACTCGCTCTCTCGTCGAGGAC
GCTCCTCAAGGCCGAGCCGGTTGGCGCGACTACCTGGGCGGCCTGACGCT
GGCCGCCATGCTGGGTACCGGGACCATCAGCCTTCTCATCGGCGGCGACG
TTCGCCTGACGGGTGAGGGTCGCGCGGTGGCTCTCTTTATGTTCGACGCC
AATCACCGCACCCGGGTGGTTCTCAGCGTTAGGGATCAAGAAGACCACGA
CTGGCAGTTTCGACTCAATTGGCCCTGGCCCGACGAGAACTTCTCCGCCC
CCTGTCACATGCAAATCGTCAAAGATGGCCGACCGCAGCCAGTGCGCGCC
ACAGCGGTGGACGGAGCCTACATCTTCAATCCCGCACTCTTTCGAGCTTT
CTCCGTGCGCATCCAAAACGACCCCTACTGCTACTATTTTTGGGCTTTGC
GCTGCCAGAGGCTGATCCATCCCAAGCGCATCGGCATCGAGATCTGGTCG
CAGCTTGACGGCCACGAAGAGGAGCACAAAACCGTCAACGTTACTGACTT
CGCTAAAGAGGTCGAGGGTTACAGCCTGTGGCACCACAATAGCTGGATCA
ACCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16677:788..1495-

>mRNA_P-wetherbeei_contig16677.1.1 ID=mRNA_P-wetherbeei_contig16677.1.1|Name=mRNA_P-wetherbeei_contig16677.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig16677:788..1495- (Phaeothamnion wetherbeei SAG_119_79)
AAAATCTTGCATCGGCGCGTAGCGGCCTTCCTCTTCCTGGCCTTCCATCT
GTATTCGGGTTGCATCGTTGGCTTGTGGTATACGGCCCTGATGATCCCCT
ATCTGTGCGCTATCTTCCAGGACGGGTTTACTCGCTCTCTCGTCGAGGAC
GCTCCTCAAGGCCGAGCCGGTTGGCGCGACTACCTGGGCGGCCTGACGCT
GGCCGCCATGCTGGGTACCGGGACCATCAGCCTTCTCATCGGCGGCGACG
TTCGCCTGACGGGTGAGGGTCGCGCGGTGGCTCTCTTTATGTTCGACGCC
AATCACCGCACCCGGGTGGTTCTCAGCGTTAGGGATCAAGAAGACCACGA
CTGGCAGTTTCGACTCAATTGGCCCTGGCCCGACGAGAACTTCTCCGCCC
CCTGTCACATGCAAATCGTCAAAGATGGCCGACCGCAGCCAGTGCGCGCC
ACAGCGGTGGACGGAGCCTACATCTTCAATCCCGCACTCTTTCGAGCTTT
CTCCGTGCGCATCCAAAACGACCCCTACTGCTACTATTTTTGGGCTTTGC
GCTGCCAGAGGCTGATCCATCCCAAGCGCATCGGCATCGAGATCTGGTCG
CAGCTTGACGGCCACGAAGAGGAGCACAAAACCGTCAACGTTACTGACTT
CGCTAAAGAGGTCGAGGGTTACAGCCTGTGGCACCACAATAGCTGGATCA
ACCCGTGA
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