mRNA_P-wetherbeei_contig16674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16674.1.1
Unique NamemRNA_P-wetherbeei_contig16674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI001C8759D9 (Ig-like domain-containing protein n=1 Tax=Pseudomonas sp. RIT778 TaxID=2870471 RepID=UPI001C8759D9)

HSP 1 Score: 94.0 bits (232), Expect = 1.520e-19
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:    7 YSNGGAGATGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            YSNGG G T +  +++IG XXXX+GWD  GG GG A G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++A+  XXXXXXXXXXXXX      S P   A I+NNGGTL+  Y
Sbjct:    8 YSNGGNGGTASNGTISIGGXXXXAGWDKVGGVGGNAAGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITAANFSAISGXXXXXXXXXXXXXGGVTG-SVPLAFAAIYNNGGTLNTAY 153
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: A0A2N8GXM1_9PSED (Glycosyl hydrolase (Fragment) n=6 Tax=Pseudomonas TaxID=286 RepID=A0A2N8GXM1_9PSED)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-16
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    7 YSNGGAGATGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAM 309
            YSNGG G T T  +++IG XXXX+GWD  GGA   A G IYN  TGT+ I+GTS I+NN+GAGXXXXXXXX G++    G+ G+GVG IWNQGGTV IT+ N+ A+
Sbjct:    3 YSNGGNGGTATNGTISIGGXXXXAGWDKVGGAXXNAAGGIYNASTGTLKIVGTSVISNNLGAGXXXXXXXXLGSNASNGGIAGRGVGAIWNQGGTVLITAANFAAI 108
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI000A1F2273 (Ig-like domain-containing protein n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI000A1F2273)

HSP 1 Score: 77.8 bits (190), Expect = 6.760e-14
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:   79 GWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            GWD  GGAGG A G IYN  +GT+ I+GTS I+NNIGAGXXXXXXXX G++    G+ G+GVG IWNQGGTV IT+ N+ A+   XXXXXXXXXXXXXXXXXX     AA I NNGGTL+  Y
Sbjct:    1 GWDKVGGAGGNAAGGIYNAASGTLKIVGTSVISNNIGAGXXXXXXXXQGSNASNGGIAGRGVGAIWNQGGTVLITAANFAAISGNXXXXXXXXXXXXXXXXXXXXXXFAA-IFNNGGTLNTAY 122
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: A0A519K4V4_9CAUL (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519K4V4_9CAUL)

HSP 1 Score: 75.5 bits (184), Expect = 4.240e-13
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:  124 IYNTGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQGLGGKGVGGIWNQGGTVHITSGNYTAM 309
            IYNTGTVNIIGTS I +N+GAGXXXXXXXXXGN  G+GG GVG IWNQGGTV+IT+ N+ AM
Sbjct:    1 IYNTGTVNIIGTSVIASNLGAGXXXXXXXXXGNHAGVGGLGVGAIWNQGGTVNITAANFAAM 62
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: A0A345UQ49_PSEFL (Glycosyl hydrolase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A345UQ49_PSEFL)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-11
Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:   31 TGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            T +  +++IG XXXX+GWD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++A+  XXXXXXXXXXXXX      S P   A I+NNGGTL+  Y
Sbjct:  471 TASNGTISIGGXXXXAGWDKVXXXXXXXXGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITAANFSAISGXXXXXXXXXXXXXGGVTG-SVPLAFAAIYNNGGTLNTAY 608
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI001F39D7A7 (Ig-like domain-containing protein n=1 Tax=Pseudomonas glycinae TaxID=1785145 RepID=UPI001F39D7A7)

HSP 1 Score: 69.7 bits (169), Expect = 4.530e-11
Identity = 68/139 (48.92%), Postives = 86/139 (61.87%), Query Frame = 1 
Query:   31 TGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            T +  +++IG XXXX+GWD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++++       XXX           S P   A I+NNGGTL+  Y
Sbjct:  470 TASNGTISIGGXXXXAGWDKVXXXXXXXXGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITASNFSSITGNAAGSXXXGAELGGGVTG-SVPLAFAAIYNNGGTLNTAY 607
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BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI00078C31DF (Ig-like domain-containing protein n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI00078C31DF)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-11
Identity = 70/139 (50.36%), Postives = 87/139 (62.59%), Query Frame = 1 
Query:   31 TGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            T +  +++IG XXXX GWD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++++      XXXXX          S P   A I+NNGGTL+  Y
Sbjct:  470 TASNGTISIGGXXXXXGWDKVXXXXXXXXGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITASNFSSITGNAAGXXXXXAELGGGVTG-SVPLAFAAIYNNGGTLNTAY 607
[Close]
BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: A0A7X6IK28_9PSED (DUF4347 domain-containing protein n=1 Tax=Pseudomonas sp. BG5 TaxID=2722817 RepID=A0A7X6IK28_9PSED)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-11
Identity = 70/139 (50.36%), Postives = 87/139 (62.59%), Query Frame = 1 
Query:   31 TGTANSVTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            T +  +++IG XXXX GWD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++++      XXXXX          S P   A I+NNGGTL+  Y
Sbjct:  470 TASNGTISIGGXXXXXGWDKVXXXXXXXXGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITASNFSSITGNAAGXXXXXAELGGGVTG-SVPLAFAAIYNNGGTLNTAY 607
[Close]
BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI0018D8225F (Ig-like domain-containing protein n=1 Tax=Pseudomonas glycinae TaxID=1785145 RepID=UPI0018D8225F)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-11
Identity = 81/140 (57.86%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:   34 GTANS--VTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            GTAN+  ++IGXXXXX  WD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++A+  XXXXXXXXXXXX       S P   A I+NNGGTL+  Y
Sbjct:  469 GTANNGTISIGXXXXXXXWDKXXXXXXXXAGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITAANFSAISGXXXXXXXXXXXXGGGVTG-SVPLAFAAIYNNGGTLNTAY 607
[Close]
BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Match: UPI001F3D5DFC (Ig-like domain-containing protein n=1 Tax=Pseudomonas glycinae TaxID=1785145 RepID=UPI001F3D5DFC)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-11
Identity = 81/140 (57.86%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:   34 GTANS--VTIGXXXXXSGWDATGGAGGAATGAIYN--TGTVNIIGTSAITNNIGAGXXXXXXXXXGNSQ---GLGGKGVGGIWNQGGTVHITSGNYTAMXXXXXXXXXXXXXXXXXXXXXSSPAGAAKIHNNGGTLDINY 432
            GTAN+  ++IGXXXXX  WD          G IYN  TGT+ I+GTS I+NNIGAGXXXXXXXXX ++    G GG+GVG IWNQGGTV IT+ N++A+  XXXXXXXXXXXX       S P   A I+NNGGTL+  Y
Sbjct:  469 GTANNGTISIGXXXXXXXWDKXXXXXXXXAGGIYNASTGTLKIVGTSVISNNIGAGXXXXXXXXXXSNNLNGGDGGRGVGAIWNQGGTVLITAANFSAISGXXXXXXXXXXXXGGGVTG-SVPLAFAAIYNNGGTLNTAY 607
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C8759D91.520e-1961.22Ig-like domain-containing protein n=1 Tax=Pseudomo... [more]
A0A2N8GXM1_9PSED2.570e-1660.38Glycosyl hydrolase (Fragment) n=6 Tax=Pseudomonas ... [more]
UPI000A1F22736.760e-1465.04Ig-like domain-containing protein n=1 Tax=unclassi... [more]
A0A519K4V4_9CAUL4.240e-1377.42Cadherin_4 domain-containing protein (Fragment) n=... [more]
A0A345UQ49_PSEFL1.790e-1156.83Glycosyl hydrolase n=2 Tax=Pseudomonas TaxID=286 R... [more]
UPI001F39D7A74.530e-1148.92Ig-like domain-containing protein n=1 Tax=Pseudomo... [more]
UPI00078C31DF8.400e-1150.36Ig-like domain-containing protein n=1 Tax=unclassi... [more]
A0A7X6IK28_9PSED8.400e-1150.36DUF4347 domain-containing protein n=1 Tax=Pseudomo... [more]
UPI0018D8225F8.400e-1157.86Ig-like domain-containing protein n=1 Tax=Pseudomo... [more]
UPI001F3D5DFC8.400e-1157.86Ig-like domain-containing protein n=1 Tax=Pseudomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16674contigP-wetherbeei_contig16674:437..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.831407-CDS-P-wetherbeei_contig16674:436..8681683186093.831407-CDS-P-wetherbeei_contig16674:436..868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16674 437..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16674.1.1prot_P-wetherbeei_contig16674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16674 437..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16674.1.1

>prot_P-wetherbeei_contig16674.1.1 ID=prot_P-wetherbeei_contig16674.1.1|Name=mRNA_P-wetherbeei_contig16674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
SGYSNGGAGATGTANSVTIGGGGGGSGWDATGGAGGAATGAIYNTGTVNI
IGTSAITNNIGAGGGGGGGGGAGNSQGLGGKGVGGIWNQGGTVHITSGNY
TAMTGNAGVSGVIGAVVNGGTIIGSSPAGAAKIHNNGGTLDINY
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mRNA from alignment at P-wetherbeei_contig16674:437..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16674.1.1 ID=mRNA_P-wetherbeei_contig16674.1.1|Name=mRNA_P-wetherbeei_contig16674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig16674:437..868+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGCTACAGCAATGGCGGCGCGGGTGCAACCGGCACAGCAAACAGTGT
CACGATAGGTGGTGGCGGTGGTGGATCCGGCTGGGACGCCACCGGCGGTG
CCGGTGGAGCAGCAACCGGTGCCATCTACAACACCGGCACGGTGAACATC
ATTGGCACCTCAGCCATCACCAACAACATCGGCGCTGGCGGCGGCGGCGG
TGGTGGTGGTGGCGCTGGAAACAGCCAGGGCCTTGGTGGCAAGGGCGTGG
GCGGCATCTGGAACCAGGGCGGCACCGTCCACATTACCAGCGGCAACTAC
ACCGCGATGACGGGCAACGCCGGTGTCAGCGGCGTGATAGGGGCCGTGGT
CAATGGCGGCACCATCATCGGGTCGTCTCCAGCCGGAGCCGCCAAGATTC
ACAACAATGGCGGAACGCTGGACATCAATTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16674:437..868+

>mRNA_P-wetherbeei_contig16674.1.1 ID=mRNA_P-wetherbeei_contig16674.1.1|Name=mRNA_P-wetherbeei_contig16674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig16674:437..868+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGCTACAGCAATGGCGGCGCGGGTGCAACCGGCACAGCAAACAGTGT
CACGATAGGTGGTGGCGGTGGTGGATCCGGCTGGGACGCCACCGGCGGTG
CCGGTGGAGCAGCAACCGGTGCCATCTACAACACCGGCACGGTGAACATC
ATTGGCACCTCAGCCATCACCAACAACATCGGCGCTGGCGGCGGCGGCGG
TGGTGGTGGTGGCGCTGGAAACAGCCAGGGCCTTGGTGGCAAGGGCGTGG
GCGGCATCTGGAACCAGGGCGGCACCGTCCACATTACCAGCGGCAACTAC
ACCGCGATGACGGGCAACGCCGGTGTCAGCGGCGTGATAGGGGCCGTGGT
CAATGGCGGCACCATCATCGGGTCGTCTCCAGCCGGAGCCGCCAAGATTC
ACAACAATGGCGGAACGCTGGACATCAATTAC
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