mRNA_P-wetherbeei_contig16635.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16635.1.1
Unique NamemRNA_P-wetherbeei_contig16635.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16635.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16635contigP-wetherbeei_contig16635:271..1448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1178
Hectar predicted targeting categoryother localisation
Exons1
Cds size1020
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.716165-UTR-P-wetherbeei_contig16635:270..4211683186092.716165-UTR-P-wetherbeei_contig16635:270..421Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16635 271..421 -
1683186092.7345512-UTR-P-wetherbeei_contig16635:1441..14481683186092.7345512-UTR-P-wetherbeei_contig16635:1441..1448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16635 1442..1448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.72565-CDS-P-wetherbeei_contig16635:421..14411683186092.72565-CDS-P-wetherbeei_contig16635:421..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16635 422..1441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16635.1.1prot_P-wetherbeei_contig16635.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16635 422..1441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16635.1.1

>prot_P-wetherbeei_contig16635.1.1 ID=prot_P-wetherbeei_contig16635.1.1|Name=mRNA_P-wetherbeei_contig16635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MAPERSLGPGSPWSSGSDGEDDDEDRRKGAAWPGGAAPLRMKRGDSGGEG
DGRGGDGGGSGEDALTAAAERAAERGHGTVAAVLRSRLQRESRSRSAAAG
GSASSVPPFPPSSHDAADGGAERGGSSSRAGSPKASARLPPSPPWPPRLG
GAATGAGEDFDAAAAAAAVAERVRMAAEARTRGHYSVADALMRQIGGGGG
GGGGSECAVAPPGTAAAAAVWRMADRFLTSADLWVGRLADDEDGEAAAEA
TGATATEMTEAAEAEMAKVAAEAMTAIKEGTAGEEAREVKSEGVVREGRE
EAAVEELGEYGKSEAVDVATTAPDSPAAAAAGTGGESWL*
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mRNA from alignment at P-wetherbeei_contig16635:271..1448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16635.1.1 ID=mRNA_P-wetherbeei_contig16635.1.1|Name=mRNA_P-wetherbeei_contig16635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1178bp|location=Sequence derived from alignment at P-wetherbeei_contig16635:271..1448- (Phaeothamnion wetherbeei SAG_119_79)
ACCGACTATGGCGCCGGAGAGGTCGCTGGGCCCCGGCAGCCCATGGTCGT
CCGGCAGCGACGGGGAGGACGACGATGAAGACCGGCGGAAGGGCGCGGCG
TGGCCGGGCGGCGCGGCGCCGCTTCGGATGAAGCGCGGCGACAGCGGCGG
AGAGGGCGACGGTCGCGGCGGTGACGGCGGTGGCAGCGGCGAGGACGCGC
TTACCGCCGCGGCGGAACGCGCGGCAGAGCGCGGCCACGGCACTGTCGCG
GCGGTGCTGCGGTCGCGGTTGCAGCGGGAAAGCCGGAGCCGCTCAGCGGC
TGCCGGAGGCTCAGCGTCGTCGGTTCCTCCTTTCCCCCCTTCATCGCACG
ATGCTGCGGACGGAGGGGCCGAGAGAGGCGGCAGCAGCAGCAGGGCGGGC
AGCCCGAAAGCGTCAGCGCGCCTGCCGCCGTCGCCGCCGTGGCCGCCGCG
TCTAGGGGGAGCTGCAACGGGCGCTGGCGAGGACTTTGATGCTGCGGCGG
CGGCGGCCGCCGTCGCCGAGCGCGTGCGAATGGCCGCTGAGGCGCGTACG
CGGGGCCACTACAGCGTCGCCGACGCCTTGATGCGGCAGATCGGTGGCGG
CGGTGGCGGCGGCGGTGGCTCCGAGTGCGCGGTGGCGCCGCCGGGCACGG
CAGCGGCAGCGGCGGTGTGGCGGATGGCGGACCGGTTCCTGACTTCGGCG
GACCTCTGGGTGGGCAGGCTGGCGGACGACGAGGACGGCGAGGCGGCGGC
TGAGGCAACTGGGGCGACGGCGACAGAAATGACTGAGGCAGCGGAGGCAG
AAATGGCAAAAGTGGCGGCAGAAGCCATGACTGCCATCAAGGAAGGAACC
GCCGGTGAGGAGGCAAGGGAGGTAAAGAGTGAGGGAGTCGTGCGGGAAGG
CCGGGAGGAGGCAGCGGTGGAGGAGCTGGGAGAATACGGGAAAAGTGAAG
CCGTCGATGTTGCTACTACTGCGCCCGACTCACCAGCAGCCGCGGCGGCC
GGGACGGGCGGTGAGAGTTGGCTTTAGTTAGCTCCGGCAATTCTGTTTCA
GGGCGTAATGCGTGGCACAAGTGTGTCATTAAATATGATCATTTAAAACT
GAGCTCGAGGGCGAGCAGCTCCAGAGGGGAGGCATACAAGCTCTACATTG
AAGGAGACGACCTTGTGCGGACAAGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16635:271..1448-

>mRNA_P-wetherbeei_contig16635.1.1 ID=mRNA_P-wetherbeei_contig16635.1.1|Name=mRNA_P-wetherbeei_contig16635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig16635:271..1448- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGGAGAGGTCGCTGGGCCCCGGCAGCCCATGGTCGTCCGGCAG
CGACGGGGAGGACGACGATGAAGACCGGCGGAAGGGCGCGGCGTGGCCGG
GCGGCGCGGCGCCGCTTCGGATGAAGCGCGGCGACAGCGGCGGAGAGGGC
GACGGTCGCGGCGGTGACGGCGGTGGCAGCGGCGAGGACGCGCTTACCGC
CGCGGCGGAACGCGCGGCAGAGCGCGGCCACGGCACTGTCGCGGCGGTGC
TGCGGTCGCGGTTGCAGCGGGAAAGCCGGAGCCGCTCAGCGGCTGCCGGA
GGCTCAGCGTCGTCGGTTCCTCCTTTCCCCCCTTCATCGCACGATGCTGC
GGACGGAGGGGCCGAGAGAGGCGGCAGCAGCAGCAGGGCGGGCAGCCCGA
AAGCGTCAGCGCGCCTGCCGCCGTCGCCGCCGTGGCCGCCGCGTCTAGGG
GGAGCTGCAACGGGCGCTGGCGAGGACTTTGATGCTGCGGCGGCGGCGGC
CGCCGTCGCCGAGCGCGTGCGAATGGCCGCTGAGGCGCGTACGCGGGGCC
ACTACAGCGTCGCCGACGCCTTGATGCGGCAGATCGGTGGCGGCGGTGGC
GGCGGCGGTGGCTCCGAGTGCGCGGTGGCGCCGCCGGGCACGGCAGCGGC
AGCGGCGGTGTGGCGGATGGCGGACCGGTTCCTGACTTCGGCGGACCTCT
GGGTGGGCAGGCTGGCGGACGACGAGGACGGCGAGGCGGCGGCTGAGGCA
ACTGGGGCGACGGCGACAGAAATGACTGAGGCAGCGGAGGCAGAAATGGC
AAAAGTGGCGGCAGAAGCCATGACTGCCATCAAGGAAGGAACCGCCGGTG
AGGAGGCAAGGGAGGTAAAGAGTGAGGGAGTCGTGCGGGAAGGCCGGGAG
GAGGCAGCGGTGGAGGAGCTGGGAGAATACGGGAAAAGTGAAGCCGTCGA
TGTTGCTACTACTGCGCCCGACTCACCAGCAGCCGCGGCGGCCGGGACGG
GCGGTGAGAGTTGGCTTTAG
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