mRNA_P-wetherbeei_contig16622.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16622.1.1
Unique NamemRNA_P-wetherbeei_contig16622.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Match: A0A482SBU4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBU4_9ARCH)

HSP 1 Score: 149 bits (376), Expect = 8.300e-40
Identity = 85/174 (48.85%), Postives = 119/174 (68.39%), Query Frame = 1 
Query:    1 SALVKEVVGRLGAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQAAVTAHGGVRPVLAALQRHRRDAALLPFIFDALAGIAVGSEVNALAVGAAGGAALALEAVGLHCRRREVVKSGCHALAILSDVRGQGARLAEEGGVAVMLLVLRLHTRFVALHRISAIVLLRMLQ 522
            S +VKE++ +     +++RAL  H  +S  L KSACGALSN+CQ KQNQ +V A GG++P++ ++  H+ +  LLPFIFDA+A I V +E NA  V A G   + + ++  H    EVVKSGCH LAILSDV+GQ +++A  GGV V+L +L  H  +  LHR++A+VLLRMLQ
Sbjct:   82 STVVKEIIAKYNGSTVLVRALKRHSRSSDFL-KSACGALSNICQFKQNQESVAAQGGLQPLVGSIHIHQSNGKLLPFIFDAIASIIVNNEDNARGVSALGIIPVVVASLNRHKTSAEVVKSGCHTLAILSDVKGQASKIAFAGGVPVILSLLDSHPVYADLHRVAAVVLLRMLQ 254
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BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Match: A0A7S2RJC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJC0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.430e-27
Identity = 67/163 (41.10%), Postives = 90/163 (55.21%), Query Frame = 1 
Query:   34 GAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQAAVTAHGGVRPVLAALQRHRRDAALLPFIFDALAGIAVGSEVNALAVGAAGGAALALEAVGLHCRRREVVKSGCHALAILSDVRGQGARLAEEGGVAVMLLVLRLHTRFVALHRISAIVLLRMLQ 522
            G + ++++ +  HGA  P  +KSACGALSN+CQ+  NQ  + +HGGV  +   L+ HR + ALLPF FDALA + VG+  N   +  AG   + L  +  H    E+VKSGCHALAILS                            V LHR++A+VLLRMLQ
Sbjct:    3 GGIPVIIQGMKLHGAV-PDFLKSACGALSNMCQNANNQGLIASHGGVACLTQVLKNHRGNTALLPFAFDALASLIVGNSENGSKLSDAGAIGVILSLMQEHLLHGELVKSGCHALAILSXXXXXXXXXXXXXXXXXXXXXXXXXPHQVDLHRVAAVVLLRMLQ 164
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BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Match: A0A067C408_SAPPC (Tubulin-glutamate carboxypeptidase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C408_SAPPC)

HSP 1 Score: 88.2 bits (217), Expect = 4.230e-17
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = 1 
Query:   10 VKEVVGRLGAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQAAVTAHGGVRPVLAALQRHRRDAALLPFIFDALAGIAVGSEVNALAVGAAGGAALALEAVGLHCRRREVVKSGCHALAILSDVRGQGARLAEEGGVAVMLLVL 456
            VK  +   G +  +LR + AH  T+  L++S  G LSNL +   NQ  +    G+  +L ALQ H R+  L+ F FD LA I VG + N L +  AG     L+ V  H  R ++VKSGCH LAI+ D+ G GA + +  G+  +L +L
Sbjct:   80 VKASISAHGGIHTLLRCIDAHK-TNAELLRSVLGTLSNLSELPDNQHHIGI--GLPVILTALQMHTRNIDLVAFAFDTLASIVVGHKKNCLTLQQAGAMGFILDIVAKHPSRLDLVKSGCHTLAIMCDLAGMGAAIVQVKGIKPLLTLL 225
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BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Match: A0A1V9YMR1_9STRA (Tubulin-glutamate carboxypeptidase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMR1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.840e-17
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:   10 VKEVVGRLGAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQAAVTAHGGVRPVLAALQRHRRDAALLPFIFDALAGIAVGSEVNALAVGAAGGAALALEAVGLHCRRREVVKSGCHALAILSDVRGQGARLAEEGGVAVMLLVL 456
            VK  +   G V  +LR + AH  T+  L++S  G LSNL +  +NQ  +    G+  +LAALQ H R+  L+ F FD LA I VG + N   +  AG     L+ V  H  R ++VKSGCH LAI+ D+ G GA + +  G+  +L +L
Sbjct:   80 VKANISAHGGVHTLLRCIDAHK-TNAELLRSVLGTLSNLSELAENQHHIGI--GLPVILAALQLHTRNVDLVAFAFDTLASIIVGHKKNCHTIQQAGAMTFILDMVQKHPTRLDLVKSGCHTLAIMCDLAGMGAAIVQAKGIKPLLSLL 225
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BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Match: A0A7S1XUY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.830e-10
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    7 LVKEVVGRLGAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQAAVTAHGGV 174
            LVKEV+GR G + +++  + AH A SP L+KS CGALSN+CQ++ NQ  + AHGG+
Sbjct:   87 LVKEVIGRYGGIPVIIAGMRAH-AGSPDLLKSCCGALSNICQNQHNQTLIAAHGGI 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16622.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A482SBU4_9ARCH8.300e-4048.85Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2RJC0_9STRA7.430e-2741.10Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067C408_SAPPC4.230e-1738.26Tubulin-glutamate carboxypeptidase n=1 Tax=Saprole... [more]
A0A1V9YMR1_9STRA7.840e-1738.93Tubulin-glutamate carboxypeptidase n=1 Tax=Achlya ... [more]
A0A7S1XUY7_9STRA7.830e-1053.57Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16622contigP-wetherbeei_contig16622:191..1461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008876918.1
Preferred nameAGTPBP1
PFAMsPeptidase_M14
Model size522
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0001505,GO:0001654,GO:0001754,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008344,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009987,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0018991,GO:0019098,GO:0019538,GO:0021533,GO:0021537,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021772,GO:0021953,GO:0021988,GO:0022008,GO:0022037,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030182,GO:0030217,GO:0030534,GO:0030900,GO:0030902,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0033077,GO:0035608,GO:0035609,GO:0035610,GO:0036211,GO:0042110,GO:0042133,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046530,GO:0046649,GO:0048513,GO:0048534,GO:0048592,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050905,GO:0060041,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0090596,GO:0090659,GO:0140096,GO:1901564
Exons4
Evalue3.32e-11
EggNOG OGsCOG2866@1|root,KOG3641@2759|Eukaryota
Descriptionprotein deglutamylation
Cds size522
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.4944096-CDS-P-wetherbeei_contig16622:190..3221683186092.4944096-CDS-P-wetherbeei_contig16622:190..322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16622 191..322 +
1683186092.5056853-CDS-P-wetherbeei_contig16622:529..6671683186092.5056853-CDS-P-wetherbeei_contig16622:529..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16622 530..667 +
1683186092.5152202-CDS-P-wetherbeei_contig16622:949..10841683186092.5152202-CDS-P-wetherbeei_contig16622:949..1084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16622 950..1084 +
1683186092.524567-CDS-P-wetherbeei_contig16622:1344..14611683186092.524567-CDS-P-wetherbeei_contig16622:1344..1461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16622 1345..1461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16622.1.1prot_P-wetherbeei_contig16622.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16622 191..1461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16622.1.1

>prot_P-wetherbeei_contig16622.1.1 ID=prot_P-wetherbeei_contig16622.1.1|Name=mRNA_P-wetherbeei_contig16622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
SALVKEVVGRLGAVGLVLRALTAHGATSPALVKSACGALSNLCQDKQNQA
AVTAHGGVRPVLAALQRHRRDAALLPFIFDALAGIAVGSEVNALAVGAAG
GAALALEAVGLHCRRREVVKSGCHALAILSDVRGQGARLAEEGGVAVMLL
VLRLHTRFVALHRISAIVLLRMLQ
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mRNA from alignment at P-wetherbeei_contig16622:191..1461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16622.1.1 ID=mRNA_P-wetherbeei_contig16622.1.1|Name=mRNA_P-wetherbeei_contig16622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1271bp|location=Sequence derived from alignment at P-wetherbeei_contig16622:191..1461+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCGCTGGTAAAGGAGGTGGTGGGCCGGCTTGGGGCGGTGGGGCTCGT
GCTGCGGGCACTCACCGCGCACGGCGCCACCTCGCCGGCCCTCGTCAAAT
CAGCCTGCGGCGCCCTTTCCAACCTGTGCCAGGTACAGCGGTAGAGAACT
ACAGGTGTTGCGGTTTCGGTCGGTTTTGGTCGATTTGTAGGATCGAGAAG
ATGTTAAAGCCGGTTCTCGCTTCCTTTCATCTCGCTTCGCGCTGTCCTGA
GCCATTTCCCACCGGAAACGTGGCAATAATTCCTTTTCCCCCCTTTTCTC
GCAAAATGGCTCCTCAAAAAACACGCATATCAAAAACAGGACAAGCAGAA
CCAGGCGGCGGTGACGGCCCATGGCGGCGTCCGGCCGGTGCTGGCCGCCC
TCCAACGGCACCGCCGCGACGCCGCGCTGCTGCCGTTCATCTTCGACGCT
CTGGCGGGCATCGCCGTCGGCTCAGAGGTAAGACGGGGAAGAGAAGTTTT
TCGCATTTCTGGGACCTTACACGTGGAAAGCATTGGTCCATCGGCGAAAG
AGAGCTCTCTTTGTGTCTGCAACATAAGCTTGCTGCTTCCCGATTGTTTT
GTTGCGTGAATCGCTCCTCTAAACGGCGCCAGTTGGAGAATGTACCGTTC
CTCTCGATTTCCAATCCACGGTTCCACGGTTCCTTCCTCCATAAGAGTTT
CGTGGCTTTTCGCTTTTTCTCCCTCCACGAATGCATTCGATCTACCCACC
CTCGGTCAGGTCAATGCACTGGCTGTAGGGGCAGCGGGCGGGGCGGCGCT
GGCACTCGAGGCGGTGGGGCTGCACTGCCGGCGGCGGGAGGTGGTCAAGA
GCGGCTGCCACGCTCTCGCCATCCTCTCCGACGTCCGCGGACAGGTGAGA
ATCGAGCGCGTGAGGAGGAGGAAGGGTGGAAAATGGAGCGAGTGGGAGGG
ATTGATGCAAGCTATTTCATTTAGGTTGATTCGGGCCATGCTGTTCCTTC
CTGGCATCGGAGGTCTCTTCCTGGTATGTGAGAAGAAAAGTAATGGAGAA
GGGCCTCCTGTCAACACATTGATTCGTTTACAGCTGATGCTGGCCTTGCT
GACAGGTTTTCTGACTTTCTTCCGATCTGTTTCCTCCTCTTCGGCGGAGA
AAAGGGGGCTCGTCTGGCGGAAGAGGGCGGTGTGGCGGTGATGCTGCTGG
TGCTTCGCCTCCACACTCGGTTCGTCGCACTTCACCGCATCTCCGCCATT
GTGCTCCTGCGCATGCTCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16622:191..1461+

>mRNA_P-wetherbeei_contig16622.1.1 ID=mRNA_P-wetherbeei_contig16622.1.1|Name=mRNA_P-wetherbeei_contig16622.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig16622:191..1461+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCGCTGGTAAAGGAGGTGGTGGGCCGGCTTGGGGCGGTGGGGCTCGT
GCTGCGGGCACTCACCGCGCACGGCGCCACCTCGCCGGCCCTCGTCAAAT
CAGCCTGCGGCGCCCTTTCCAACCTGTGCCAGGACAAGCAGAACCAGGCG
GCGGTGACGGCCCATGGCGGCGTCCGGCCGGTGCTGGCCGCCCTCCAACG
GCACCGCCGCGACGCCGCGCTGCTGCCGTTCATCTTCGACGCTCTGGCGG
GCATCGCCGTCGGCTCAGAGGTCAATGCACTGGCTGTAGGGGCAGCGGGC
GGGGCGGCGCTGGCACTCGAGGCGGTGGGGCTGCACTGCCGGCGGCGGGA
GGTGGTCAAGAGCGGCTGCCACGCTCTCGCCATCCTCTCCGACGTCCGCG
GACAGGGGGCTCGTCTGGCGGAAGAGGGCGGTGTGGCGGTGATGCTGCTG
GTGCTTCGCCTCCACACTCGGTTCGTCGCACTTCACCGCATCTCCGCCAT
TGTGCTCCTGCGCATGCTCCAG
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