mRNA_P-wetherbeei_contig16620.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16620.1.1
Unique NamemRNA_P-wetherbeei_contig16620.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16620.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16620contigP-wetherbeei_contig16620:444..1231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size644
Hectar predicted targeting categoryother localisation
Exons2
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.4015858-CDS-P-wetherbeei_contig16620:445..6941683186092.4015858-CDS-P-wetherbeei_contig16620:445..694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16620 446..694 -
1683186092.4111898-CDS-P-wetherbeei_contig16620:838..12311683186092.4111898-CDS-P-wetherbeei_contig16620:838..1231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16620 839..1231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16620.1.1prot_P-wetherbeei_contig16620.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16620 446..1231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16620.1.1

>prot_P-wetherbeei_contig16620.1.1 ID=prot_P-wetherbeei_contig16620.1.1|Name=mRNA_P-wetherbeei_contig16620.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
RLPISPDKRAFTKGPRVIPVGPHTFTMESLKSSSNKRKLDDTFPHPTTNV
GDRSSASDVLRSFLVSLARAFSPTSRMSPRLLPGLLRGTSALMRHLAAHT
EAVAAGEAQGAPEDAFDYLLILVEGLAAHVPAGMDARSSMSGCWSTITPA
TCLGLRADALLFAIASLEAALQLNLALPGVRRVVAAIERLSAQADMRGSG
GGRATTSTTVHLQV
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mRNA from alignment at P-wetherbeei_contig16620:444..1231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16620.1.1 ID=mRNA_P-wetherbeei_contig16620.1.1|Name=mRNA_P-wetherbeei_contig16620.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=788bp|location=Sequence derived from alignment at P-wetherbeei_contig16620:444..1231- (Phaeothamnion wetherbeei SAG_119_79)
AGGCTCCCCATTTCCCCCGACAAACGCGCTTTCACAAAAGGACCTAGGGT
GATTCCCGTTGGCCCGCACACATTCACCATGGAGAGCTTGAAATCATCGA
GCAACAAGCGAAAACTAGATGATACTTTTCCACATCCCACGACCAACGTC
GGCGATCGGTCCTCCGCCTCCGATGTTCTTCGCAGCTTTTTAGTCTCTTT
GGCACGCGCCTTCTCGCCAACGTCGAGAATGTCGCCGCGGTTGCTCCCTG
GCCTTCTTCGCGGCACCTCGGCCCTTATGCGCCACCTCGCAGCGCACACG
GAGGCCGTCGCCGCCGGCGAAGCGCAGGGCGCTCCCGAGGATGCTTTCGA
CTATCTCCTGATCCTCGTCGAAGGGCTCGCTGCGCACGTGCCGGTGCGTT
TTGGGGCTCCTTCCTCCTTGCGGTTCAGATCACCTTGACACACCTTTGAA
GCATATATTCGCAATAAGCTCAACCTTTCGCTCCCGCACATGGAGCTGAC
ACTTCTTTTCTCTGAACTCGCTGCTCCTACTTACCAGGCTGGCATGGATG
CGCGGTCTTCGATGTCCGGCTGCTGGTCCACCATCACCCCAGCCACGTGC
CTGGGGCTGCGCGCCGACGCGCTGCTCTTCGCCATCGCCTCACTTGAAGC
CGCGCTGCAGCTAAACCTCGCCCTGCCCGGCGTCCGCCGCGTTGTGGCGG
CCATTGAGCGCTTGTCGGCGCAGGCGGACATGCGGGGCAGTGGCGGTGGA
CGGGCCACGACGAGCACGACGGTGCACCTTCAGGTGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16620:444..1231-

>mRNA_P-wetherbeei_contig16620.1.1 ID=mRNA_P-wetherbeei_contig16620.1.1|Name=mRNA_P-wetherbeei_contig16620.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig16620:444..1231- (Phaeothamnion wetherbeei SAG_119_79)
AGGCTCCCCATTTCCCCCGACAAACGCGCTTTCACAAAAGGACCTAGGGT
GATTCCCGTTGGCCCGCACACATTCACCATGGAGAGCTTGAAATCATCGA
GCAACAAGCGAAAACTAGATGATACTTTTCCACATCCCACGACCAACGTC
GGCGATCGGTCCTCCGCCTCCGATGTTCTTCGCAGCTTTTTAGTCTCTTT
GGCACGCGCCTTCTCGCCAACGTCGAGAATGTCGCCGCGGTTGCTCCCTG
GCCTTCTTCGCGGCACCTCGGCCCTTATGCGCCACCTCGCAGCGCACACG
GAGGCCGTCGCCGCCGGCGAAGCGCAGGGCGCTCCCGAGGATGCTTTCGA
CTATCTCCTGATCCTCGTCGAAGGGCTCGCTGCGCACGTGCCGGCTGGCA
TGGATGCGCGGTCTTCGATGTCCGGCTGCTGGTCCACCATCACCCCAGCC
ACGTGCCTGGGGCTGCGCGCCGACGCGCTGCTCTTCGCCATCGCCTCACT
TGAAGCCGCGCTGCAGCTAAACCTCGCCCTGCCCGGCGTCCGCCGCGTTG
TGGCGGCCATTGAGCGCTTGTCGGCGCAGGCGGACATGCGGGGCAGTGGC
GGTGGACGGGCCACGACGAGCACGACGGTGCACCTTCAGGTG
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