mRNA_P-wetherbeei_contig1661.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1661.1.1
Unique NamemRNA_P-wetherbeei_contig1661.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1661.1.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 77.8 bits (190), Expect = 6.890e-11
Identity = 37/118 (31.36%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:  139 ISRSGLLERLFSPECIHIEVLKRSQEIACFMASHRALTDAHLACLWEAARQSRASHESIRHALFRVVTEVTGHLPHGQLAQVHRAVAALPLAEYDAHTLSLLRELAEMAIDAGFRLQE 492
            ++   ++E LF    +H+E+++RS E+  FMA+   +T  H+  +W A   S+  HE+I HA+++++ E+ G LPH  ++++   +  LPLA++D  T+ L+ +++  A+DA  R ++
Sbjct:  332 LAEHQVIETLFGQN-MHVELVRRSAELIRFMAARNTVTSEHIDLIWNA---SKGKHETIVHAVYQILMEIAGTLPHDVISRLFEVINLLPLADFDLQTVDLVAKISIAALDAQSRRRD 445
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BLAST of mRNA_P-wetherbeei_contig1661.1.1 vs. uniprot
Match: A0A7S2RGE2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RGE2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.390e-7
Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:  127 LCKLISRSGLLERLFSPECIHIEVLKRSQEIACFMASHRALTDAHLACLWEAARQSRASHESIRHALFRVVTEVTGHLPHGQLAQVHRAVAALPLAEYDAHTLSLLRELAEMAIDA 474
            LC    ++   E LFSPE +H+E+LKRS  I  F+A+   LT+  L  +W+ AR     HESI+  +F ++ E+   L    L  +   +AA+PL E+D  +L L+      A+ +
Sbjct:  501 LCSWFKQNKFAEMLFSPEYMHVELLKRSGSIFHFLANENKLTEEDLTVIWDTARGVDV-HESIKDTVFLMIAELARWLHPDILMFLWNKLAAIPLDEHDPKSLVLVHSFTLNAVSS 615
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1661.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0D2WMI0_CAPO36.890e-1131.36Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
A0A7S2RGE2_9STRA1.390e-734.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1661contigP-wetherbeei_contig1661:2..2859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog192875.XP_004363911.1
Preferred nameUSP34
PFAMsDUF3517,UCH
Model size2161
Max annot lvl33154|Opisthokonta
KEGG koko:K11840,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0002682,GO:0002683,GO:0002697,GO:0002700,GO:0002759,GO:0002784,GO:0002831,GO:0002832,GO:0002920,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008592,GO:0009888,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010646,GO:0010647,GO:0010648,GO:0016055,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030177,GO:0030307,GO:0031347,GO:0031348,GO:0031647,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0035220,GO:0035295,GO:0036211,GO:0036459,GO:0040008,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045751,GO:0045824,GO:0045927,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051716,GO:0060255,GO:0060429,GO:0060828,GO:0060968,GO:0065007,GO:0065008,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080134,GO:0090263,GO:0101005,GO:0140096,GO:0198738,GO:1900424,GO:1900425,GO:1901564,GO:1905114
Exons3
Evalue1.13e-11
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota,38D00@33154|Opisthokonta
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size2160
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.0057259-CDS-P-wetherbeei_contig1661:2..5511683186092.0057259-CDS-P-wetherbeei_contig1661:2..551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 3..551 -
1683186092.0173016-CDS-P-wetherbeei_contig1661:885..10501683186092.0173016-CDS-P-wetherbeei_contig1661:885..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 886..1050 -
1683186092.0268042-CDS-P-wetherbeei_contig1661:1413..28591683186092.0268042-CDS-P-wetherbeei_contig1661:1413..2859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 1414..2859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1661.1.1prot_P-wetherbeei_contig1661.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1661 3..2859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1661.1.1

>prot_P-wetherbeei_contig1661.1.1 ID=prot_P-wetherbeei_contig1661.1.1|Name=mRNA_P-wetherbeei_contig1661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=720bp
FRSVEADVAEVIDLEDDLRVMEVADLKQRLLVWPPPKHPEQKLCKLISRS
GLLERLFSPECIHIEVLKRSQEIACFMASHRALTDAHLACLWEAARQSRA
SHESIRHALFRVVTEVTGHLPHGQLAQVHRAVAALPLAEYDAHTLSLLRE
LAEMAIDAGFRLQEPAPQQPDAPPPPPPPMATRPPSGTGSSRNGGVGGGG
GSASGWAAAEPELPPPPRPFWRLVAVDLLWTCIRDESPLDRQLHDQALLT
LASLGQSVRPFSARLELLASAAAALRSGDSTAQAHRVLYSMVETLQKKAI
FVDPEEAAEIDWHVQPAGRRPPPPQPQVPPGPPPLLPPRLGEHGGADGKG
EGGGATSTDSAGASSGVGGADRGAAECRTAGHDAAAAAAPLRPPPPPVDE
NDNGGRGHVDTTPNISAESVRQASGSGGDASIGSGGGGSSSGTGAAPAPR
RKKPKQMVIKYETLVQEYGLRQAVVAGLLRYKELAAAAAAERGLSPAEVD
ATVLVGTYYPHFEALDYRISLFLLLVAEPMTALLEQQVESLWAALVDGAL
SPAEQDSALELLCDVARTSKPVFSALARPICRLMCRESSSDNGRGGGGGD
GVARASGLQRAPYRRCGFELRRLRRPGLDLFVKSMEAVNRAEGRIVAAAD
LAAAAAAAPAPAELQQVQQPPPLASKAPFTGSNGDEAAAARAITATVAVD
SCRYACSGEGLPISELGCGL
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mRNA from alignment at P-wetherbeei_contig1661:2..2859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1661.1.1 ID=mRNA_P-wetherbeei_contig1661.1.1|Name=mRNA_P-wetherbeei_contig1661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2858bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:2..2859- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGGAGTGTCGAGGCCGACGTGGCTGAGGTGATCGACCTTGAGGACGA
CCTAAGGGTGATGGAGGTGGCGGACTTGAAGCAGCGCCTGCTGGTGTGGC
CTCCGCCGAAGCACCCGGAGCAAAAACTCTGCAAGCTCATCTCGCGCAGC
GGCCTGTTGGAGCGGCTTTTCTCGCCCGAGTGCATCCACATCGAGGTGCT
GAAGCGGTCTCAGGAGATCGCCTGCTTCATGGCGAGCCACCGAGCGCTGA
CAGACGCCCACCTGGCCTGCCTGTGGGAGGCGGCGCGACAGTCACGCGCC
AGCCACGAGTCGATCCGGCACGCGCTCTTCCGCGTCGTGACGGAGGTGAC
TGGCCACCTACCGCACGGCCAGCTGGCGCAGGTGCACCGGGCAGTGGCAG
CGCTGCCGCTTGCCGAGTATGACGCACACACGCTGTCGCTGCTGCGCGAG
CTGGCGGAGATGGCCATCGACGCCGGCTTCCGCCTGCAAGAGCCGGCCCC
GCAGCAGCCAGATGCCCCGCCGCCGCCGCCGCCGCCAATGGCGACCCGGC
CGCCCAGTGGCACCGGCAGCAGCAGGAACGGCGGTGTTGGAGGCGGCGGC
GGGAGCGCGTCGGGATGGGCGGCGGCGGAGCCGGAGCTGCCCCCGCCGCC
GCGGCCGTTCTGGCGGCTGGTGGCGGTGGACCTGCTCTGGACATGCATCC
GGGACGAGTCTCCGCTGGACCGTCAGCTGCACGACCAGGCGCTGCTGACG
CTGGCCAGCCTCGGCCAGAGCGTCCGGCCCTTCAGCGCCCGCCTGGAGCT
CCTGGCGAGCGCCGCGGCGGCGCTGCGCAGCGGCGACTCGACGGCGCAGG
CACACCGCGTGCTGTACAGCATGGTGGAGACGCTGCAGAAGAAAGCAATC
TTCGTGGACCCGGAGGAGGCCGCGGAGATCGACTGGCACGTCCAGCCGGC
GGGGCGGCGCCCGCCACCGCCGCAGCCGCAGGTGCCGCCAGGACCGCCGC
CGCTGCTGCCGCCGCGGCTGGGTGAGCATGGTGGCGCTGATGGCAAGGGT
GAGGGCGGCGGAGCGACCAGCACTGACAGCGCCGGAGCCAGCAGCGGCGT
TGGCGGTGCTGACCGTGGCGCTGCGGAGTGCAGAACGGCAGGTCACGATG
CGGCGGCAGCTGCGGCGCCATTGCGGCCACCGCCACCGCCTGTAGATGAG
AACGACAACGGTGGGCGTGGCCACGTCGATACGACGCCGAATATCAGTGC
GGAAAGTGTCCGGCAGGCGAGCGGCAGCGGCGGCGACGCCAGCATTGGCA
GTGGCGGCGGTGGAAGCAGCAGCGGGACAGGCGCAGCTCCAGCGCCTCGG
CGCAAGAAGCCGAAGCAGATGGTCATCAAGTACGAGACCCTGGTTCAGGA
GTATGGCCTCCGCCAGGCCGTTGTGGCCGGGCTGCTGCGGTACAAGGTGA
GGGATCTTATCTTTGTAGAACTTGTGACCCTTGCTGCTTTCATTACTATG
CATTTTCTTGGCACGTCCCAGGCGTGGGAATGCTATTGATATTTGAGTGG
ACTTAATATATCGGGTCAAGCTTGACGCTGAACGCGTTTTGGCGACCAAC
CTTTGAACCACCCAACGAATTGCAGGTAGGTGACGAGAAGGGTTACCCTT
GTCTGTCACCTGTCCGGTCTTTCTTCCATGGCGTGAATTCCGTCTCCATC
CCCATCTTTCGCTCTCGCGTGATGCTCCTTTGGAAGCCCTCTAACCAAAA
TCCGAAACCTGAAACCGAAACCGCCAAACGCCGGTCGATTATCGGTTTGC
CGAGCGCAGGAGCTGGCGGCGGCGGCGGCGGCGGAGCGCGGCCTGTCTCC
GGCGGAGGTGGACGCAACGGTACTGGTGGGGACATACTACCCGCACTTCG
AGGCGCTTGACTACCGCATCAGCCTCTTCCTGCTGCTAGTGGCGGAGCCC
ATGACGGCGCTGCTGGAGCAGCAGGTGAGCTGTGTGTGAGCGGTTGGGCT
GCAACGGCAGAGCGGAGGCGCCGGTATGCAGCCGTTTGTGCGCGTGCAGC
TTTGGTGGGGAAGCAATTGCTACTTGGCTGGGAGCGTAACATTTGGCAAG
GAAACGAGGAGTTATGTACGGCTCGTTTTCATAATTTCAATGGCTGCTGG
TGCCTATATAACAGAATGACCTCGGCTCGCCTTGTTTTAATCCCTTTCTC
CTTCGGTTGCGGAATACGTTTCGTGCTGACCTATCCCTCTGTCGTTCCCG
CCTCGGTCTTTCTTCCCCTTTTTCTGCTGCGGCAATGACGGTGATGGCGG
CGGCACAGGTCGAATCATTGTGGGCGGCCCTGGTGGATGGAGCGCTGTCA
CCGGCGGAGCAGGACAGCGCCCTCGAGTTGCTTTGCGATGTTGCGCGGAC
GAGCAAGCCCGTCTTTAGCGCGCTAGCGCGCCCCATCTGCCGCCTCATGT
GCCGGGAGAGCTCCAGCGACAACGGCAGGGGCGGTGGCGGCGGGGATGGA
GTAGCGCGAGCGTCCGGACTGCAGCGCGCGCCGTACCGTCGCTGCGGCTT
TGAGCTGCGACGGCTCCGGCGGCCGGGCCTCGACCTGTTTGTAAAGAGCA
TGGAGGCGGTTAACCGGGCGGAAGGTCGCATTGTCGCGGCTGCTGATTTG
GCTGCAGCGGCGGCGGCGGCGCCGGCGCCGGCAGAGCTGCAGCAGGTGCA
GCAGCCACCACCTCTGGCCTCCAAAGCACCATTCACCGGCAGCAACGGCG
ACGAGGCGGCAGCGGCGCGCGCCATCACCGCGACCGTTGCCGTAGACAGC
TGCCGCTATGCCTGCTCCGGCGAGGGCCTGCCGATCAGCGAGCTCGGCTG
CGGCCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1661:2..2859-

>mRNA_P-wetherbeei_contig1661.1.1 ID=mRNA_P-wetherbeei_contig1661.1.1|Name=mRNA_P-wetherbeei_contig1661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2160bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:2..2859- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGGAGTGTCGAGGCCGACGTGGCTGAGGTGATCGACCTTGAGGACGA
CCTAAGGGTGATGGAGGTGGCGGACTTGAAGCAGCGCCTGCTGGTGTGGC
CTCCGCCGAAGCACCCGGAGCAAAAACTCTGCAAGCTCATCTCGCGCAGC
GGCCTGTTGGAGCGGCTTTTCTCGCCCGAGTGCATCCACATCGAGGTGCT
GAAGCGGTCTCAGGAGATCGCCTGCTTCATGGCGAGCCACCGAGCGCTGA
CAGACGCCCACCTGGCCTGCCTGTGGGAGGCGGCGCGACAGTCACGCGCC
AGCCACGAGTCGATCCGGCACGCGCTCTTCCGCGTCGTGACGGAGGTGAC
TGGCCACCTACCGCACGGCCAGCTGGCGCAGGTGCACCGGGCAGTGGCAG
CGCTGCCGCTTGCCGAGTATGACGCACACACGCTGTCGCTGCTGCGCGAG
CTGGCGGAGATGGCCATCGACGCCGGCTTCCGCCTGCAAGAGCCGGCCCC
GCAGCAGCCAGATGCCCCGCCGCCGCCGCCGCCGCCAATGGCGACCCGGC
CGCCCAGTGGCACCGGCAGCAGCAGGAACGGCGGTGTTGGAGGCGGCGGC
GGGAGCGCGTCGGGATGGGCGGCGGCGGAGCCGGAGCTGCCCCCGCCGCC
GCGGCCGTTCTGGCGGCTGGTGGCGGTGGACCTGCTCTGGACATGCATCC
GGGACGAGTCTCCGCTGGACCGTCAGCTGCACGACCAGGCGCTGCTGACG
CTGGCCAGCCTCGGCCAGAGCGTCCGGCCCTTCAGCGCCCGCCTGGAGCT
CCTGGCGAGCGCCGCGGCGGCGCTGCGCAGCGGCGACTCGACGGCGCAGG
CACACCGCGTGCTGTACAGCATGGTGGAGACGCTGCAGAAGAAAGCAATC
TTCGTGGACCCGGAGGAGGCCGCGGAGATCGACTGGCACGTCCAGCCGGC
GGGGCGGCGCCCGCCACCGCCGCAGCCGCAGGTGCCGCCAGGACCGCCGC
CGCTGCTGCCGCCGCGGCTGGGTGAGCATGGTGGCGCTGATGGCAAGGGT
GAGGGCGGCGGAGCGACCAGCACTGACAGCGCCGGAGCCAGCAGCGGCGT
TGGCGGTGCTGACCGTGGCGCTGCGGAGTGCAGAACGGCAGGTCACGATG
CGGCGGCAGCTGCGGCGCCATTGCGGCCACCGCCACCGCCTGTAGATGAG
AACGACAACGGTGGGCGTGGCCACGTCGATACGACGCCGAATATCAGTGC
GGAAAGTGTCCGGCAGGCGAGCGGCAGCGGCGGCGACGCCAGCATTGGCA
GTGGCGGCGGTGGAAGCAGCAGCGGGACAGGCGCAGCTCCAGCGCCTCGG
CGCAAGAAGCCGAAGCAGATGGTCATCAAGTACGAGACCCTGGTTCAGGA
GTATGGCCTCCGCCAGGCCGTTGTGGCCGGGCTGCTGCGGTACAAGGAGC
TGGCGGCGGCGGCGGCGGCGGAGCGCGGCCTGTCTCCGGCGGAGGTGGAC
GCAACGGTACTGGTGGGGACATACTACCCGCACTTCGAGGCGCTTGACTA
CCGCATCAGCCTCTTCCTGCTGCTAGTGGCGGAGCCCATGACGGCGCTGC
TGGAGCAGCAGGTCGAATCATTGTGGGCGGCCCTGGTGGATGGAGCGCTG
TCACCGGCGGAGCAGGACAGCGCCCTCGAGTTGCTTTGCGATGTTGCGCG
GACGAGCAAGCCCGTCTTTAGCGCGCTAGCGCGCCCCATCTGCCGCCTCA
TGTGCCGGGAGAGCTCCAGCGACAACGGCAGGGGCGGTGGCGGCGGGGAT
GGAGTAGCGCGAGCGTCCGGACTGCAGCGCGCGCCGTACCGTCGCTGCGG
CTTTGAGCTGCGACGGCTCCGGCGGCCGGGCCTCGACCTGTTTGTAAAGA
GCATGGAGGCGGTTAACCGGGCGGAAGGTCGCATTGTCGCGGCTGCTGAT
TTGGCTGCAGCGGCGGCGGCGGCGCCGGCGCCGGCAGAGCTGCAGCAGGT
GCAGCAGCCACCACCTCTGGCCTCCAAAGCACCATTCACCGGCAGCAACG
GCGACGAGGCGGCAGCGGCGCGCGCCATCACCGCGACCGTTGCCGTAGAC
AGCTGCCGCTATGCCTGCTCCGGCGAGGGCCTGCCGATCAGCGAGCTCGG
CTGCGGCCTC
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