mRNA_P-wetherbeei_contig1661.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1661.2.1
Unique NamemRNA_P-wetherbeei_contig1661.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1661.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1661contigP-wetherbeei_contig1661:3051..4958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons3
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.900015-CDS-P-wetherbeei_contig1661:3051..31861683186091.900015-CDS-P-wetherbeei_contig1661:3051..3186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 3052..3186 -
1683186091.9084039-CDS-P-wetherbeei_contig1661:3726..39241683186091.9084039-CDS-P-wetherbeei_contig1661:3726..3924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 3727..3924 -
1683186091.9183187-CDS-P-wetherbeei_contig1661:4526..49581683186091.9183187-CDS-P-wetherbeei_contig1661:4526..4958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1661 4527..4958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1661.2.1prot_P-wetherbeei_contig1661.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1661 3052..4958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1661.2.1

>prot_P-wetherbeei_contig1661.2.1 ID=prot_P-wetherbeei_contig1661.2.1|Name=mRNA_P-wetherbeei_contig1661.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
GGDGDGDSGCDRDGSVSGGGGGGGSGSGGGSSSSDCAGGAGYDGGGAATA
AAAAAPTPDDDNKDDDDADGELPADFWSFPRDGWDGAGEFVERSRAGQDI
SGYHAANVNAFMRLGGLSVLLRRVAARPLLEPAELRSVVHVLTEVFYILD
SQFDGAVMALHDALIRHFRSLTPERLKAVSAKDRGHLFATVHLLQGHVGR
YWGKPFEHFTMDVRFELGLALLRCPALQQRIAGLSDIRNSVAQMNRRLDY
SADLA
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mRNA from alignment at P-wetherbeei_contig1661:3051..4958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1661.2.1 ID=mRNA_P-wetherbeei_contig1661.2.1|Name=mRNA_P-wetherbeei_contig1661.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1908bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:3051..4958- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGACGGCGACGGCGACAGTGGCTGCGACCGTGACGGCAGCGTCTC
CGGCGGCGGTGGTGGTGGCGGCAGCGGCAGCGGCGGCGGCAGTAGCAGCA
GCGATTGCGCCGGCGGCGCGGGTTATGACGGCGGCGGCGCAGCAACGGCA
GCGGCGGCGGCAGCGCCGACTCCAGACGACGACAACAAGGACGACGACGA
TGCTGATGGCGAGCTTCCCGCCGATTTCTGGAGCTTCCCGCGCGACGGAT
GGGACGGCGCCGGAGAATTTGTGGAGCGGTCGCGGGCCGGGCAGGATATC
AGCGGGTATCACGCGGCCAACGTCAACGCCTTCATGCGGCTAGGCGGGCT
CTCCGTGCTGCTGCGGCGCGTTGCAGCGCGGCCGTTGCTGGAGCCCGCGG
AGCTGCGATCCGTCGTGCACGTCCTCACCGAGGTGCGGGCTGTCTGCCGG
CCGGTGACAGACAGTGCTTGCTGTTTCTGGATCTGGATTTTTGTGTTTTG
TTTCTGCAAAGTTCGTTTGGGTCTTAACGAGATGTCGGTTTTACCGGTCC
GGCGTGTACGTCTTCGCCGGGGGACGTCCTTAGGGCGACGAACAGTTTTC
CTGTGTTCTGATCTGGGTTTTCTGGGGTCCCTTTCTAACGAGTTGGTTGT
TCAGGGCTTTACAAGAAGCGGTGCGTGTTCAAGCCGTTTCGTCGGTTTCT
GCTTTGATTCCTTCCTGCTTGTAGACTTGTGATGGAAGGGACGTCCGTCC
CCTTTGATCTTTGTTGTTCCTGCTTGTTCTGTCGCTATGGACGCTGCCGT
TCTGTGGACCGCTTTCCTATGCGACGATTTTCGGAGCCGCGTCCCGTAGC
GTTTCCTCGCCGCGGCTTGCTTGTAACCGCTCCTCGCCGCCGCCTCTCCT
GGCCGCTTTTCGTAGCCACTTCCCCTTATGTCACCGCCTGCTTGTCGTTT
CCGTTGCCTCCATTCTGTCACTCGGTCATTCTTCTCTTTCACCCACCGGC
CGGTTCGCTGAAAAAACCAAACGTTACGCTCTAGGTATTTTACATCCTGG
ACTCGCAGTTCGACGGGGCGGTGATGGCGCTGCACGACGCGCTGATCCGC
CACTTCCGGTCGCTGACGCCGGAGCGACTCAAGGCCGTGTCGGCCAAGGA
CCGCGGCCACCTCTTCGCCACCGTGCACCTACTGCAGGGACACGTCGGCC
GCTACTGGGGGAAGCCCTTCGAGCACTTCACGGTGCGTCGTGTCGGTTCG
GTTGGTTCAGACACCCGTTTTCTTTCTTTATTTCTTCATTTCTTTCTTTC
TTTATTTATTTCTTGCTTTCTTTCTTTCTTTCTTTCTTGCTTTCTTACTT
TCTTGCTTTCTTACTTTCTTGCTTTCTTACTTTCTTGCTTTCTTGCTTTC
TTGCTTTCTTACCTTCCTTCTAGCTTGTTGCTTCTTGTTGCCGGTCTGCT
CGATCCGACCGTTTTTGCGATGTATCCGAGGGAAAAACTTTATTGGCGGC
CTTTCCTCATTGCCTGGAGAAAATTATTGCTGTGTTTTGGCCTGGCTGTG
ATGAAGCTTTCGACGATGTTTGCTGCTCGGCGTACCACCTTGATGATCCC
TTTCCACTTCGTTCGCCCCTCGCATTGCTGCTGTTCGGCGCCTCTGCCCG
CGCTGCCGTGATCGCTCGCTCCGCTCCCTGCCTGCCGAACCGTATCGCCG
CCGTTGTCAATACACCTTCCTGGGGATCCCGGCACTCTACCATTCTTTCT
ATTCGACTCCGTCTGCGAGCAGATGGACGTGCGCTTCGAGCTGGGGCTGG
CGCTCCTCCGGTGCCCAGCGCTGCAGCAGCGCATCGCCGGCCTCAGCGAC
ATTCGCAACAGTGTCGCCCAGATGAACCGGCGCCTCGACTACTCCGCTGA
CCTCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1661:3051..4958-

>mRNA_P-wetherbeei_contig1661.2.1 ID=mRNA_P-wetherbeei_contig1661.2.1|Name=mRNA_P-wetherbeei_contig1661.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1661:3051..4958- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGACGGCGACGGCGACAGTGGCTGCGACCGTGACGGCAGCGTCTC
CGGCGGCGGTGGTGGTGGCGGCAGCGGCAGCGGCGGCGGCAGTAGCAGCA
GCGATTGCGCCGGCGGCGCGGGTTATGACGGCGGCGGCGCAGCAACGGCA
GCGGCGGCGGCAGCGCCGACTCCAGACGACGACAACAAGGACGACGACGA
TGCTGATGGCGAGCTTCCCGCCGATTTCTGGAGCTTCCCGCGCGACGGAT
GGGACGGCGCCGGAGAATTTGTGGAGCGGTCGCGGGCCGGGCAGGATATC
AGCGGGTATCACGCGGCCAACGTCAACGCCTTCATGCGGCTAGGCGGGCT
CTCCGTGCTGCTGCGGCGCGTTGCAGCGCGGCCGTTGCTGGAGCCCGCGG
AGCTGCGATCCGTCGTGCACGTCCTCACCGAGGTATTTTACATCCTGGAC
TCGCAGTTCGACGGGGCGGTGATGGCGCTGCACGACGCGCTGATCCGCCA
CTTCCGGTCGCTGACGCCGGAGCGACTCAAGGCCGTGTCGGCCAAGGACC
GCGGCCACCTCTTCGCCACCGTGCACCTACTGCAGGGACACGTCGGCCGC
TACTGGGGGAAGCCCTTCGAGCACTTCACGATGGACGTGCGCTTCGAGCT
GGGGCTGGCGCTCCTCCGGTGCCCAGCGCTGCAGCAGCGCATCGCCGGCC
TCAGCGACATTCGCAACAGTGTCGCCCAGATGAACCGGCGCCTCGACTAC
TCCGCTGACCTCGCC
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