mRNA_P-wetherbeei_contig166.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig166.1.1
Unique NamemRNA_P-wetherbeei_contig166.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A4Y2J337_ARAVE (Protein unc-45 homolog B n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J337_ARAVE)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    4 RLKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCDADALRD 318
            +LK+EGNALF+A + +GAV+ YS AL               P      ATLL NRAAA++KLG+ +    D +AAL + P   KALFRR QA E L   +DA +D
Sbjct:   27 QLKDEGNALFSAGDYSGAVKLYSKALKQC------------PETSTEAATLLKNRAAAYLKLGEHQKVVRDATAALEITPADVKALFRRCQAYEKLENYSDAFKD 119          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: D7FIG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.400e-9
Identity = 46/95 (48.42%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    7 LKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREAL 291
            LK  GN  FA  N+  A E YS AL             ++P   +LRAT+LTNRA    K G   AC SDC+ AL  DPGR KA FRRA ARE L
Sbjct:   17 LKEAGNKAFATGNLQQAYELYSAAL-------ERCRGESSPEGINLRATVLTNRAMVLFKQGKAEACVSDCTRALEDDPGRVKAYFRRALAREKL 104          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A7S3SN90_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SN90_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-9
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   10 KNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCDAD 306
            K+EGNA   A  +  A+ SY+ AL A              ++ +  A L  NRA AH+KL     C +DC AAL   PG  KA++RRAQAREALG  AD
Sbjct:    3 KDEGNAHLKAGRLAEAIASYTSALGA------------PSLSKEAVAALHANRALAHLKLNAASECVADCDAALSAQPGYVKAMYRRAQAREALGSPAD 89          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: R1E9U7_EMIHU (Protein unc-45 homolog B n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E9U7_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.890e-9
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   10 KNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCDAD 306
            K+EGNA   A  +  A+ SY+ AL A              ++ +  A L  NRA AH+KL     C +DC AAL   PG  KA++RRAQAREALG  AD
Sbjct:    3 KDEGNAHLKAGRLAEAIASYTSALGA------------PSLSKEAVAALHANRALAHLKLNAASECVADCDAALSAQPGYVKAMYRRAQAREALGSPAD 89          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A7S0VX85_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VX85_9CRYP)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-8
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    4 RLKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALG 294
            R K EGN  FAA +  GAV  ++ A+ A  +G +P+A              LTNRAAAH++LGD  AC  D S AL  D G  KA +R+ QA E LG
Sbjct:   15 RHKLEGNERFAAGDYAGAVGCFTRAIEA--SGGSPSAAH------------LTNRAAAHVRLGDFEACLRDASDALRADGGHVKAWYRKGQALEGLG 97          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A164MQB8_9AGAM (TPR-like protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164MQB8_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 7.060e-8
Identity = 44/103 (42.72%), Postives = 51/103 (49.51%), Query Frame = 1
Query:   10 KNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCDADALRD 318
            K +GNA F A N   AV  YS A+                VAD    T   NRAAA++KLG     E DC+  L + P   KALFRR QAR ALG   DA+ D
Sbjct:   11 KEKGNASFKAGNYAEAVGHYSAAI----------------VADRKEPTYPLNRAAAYLKLGKNEDAERDCTTCLGLSPTNVKALFRRGQARAALGRTEDAILD 97          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: UPI001F0736B3 (protein unc-45 homolog A n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F0736B3)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-7
Identity = 45/98 (45.92%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    7 LKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDL--RATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALG 294
            LK EGNALF A +M GA+  YS AL                ++D     A L  NR+A ++KL D    ESD S AL  DPG  KALFRRAQA + LG
Sbjct:   13 LKEEGNALFKAGDMQGALCCYSKAL---------------KLSDSQTENAVLHRNRSACYLKLEDYTKAESDASKALNADPGDVKALFRRAQALQKLG 95          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: UPI001B8685B1 (uncharacterized protein n=3 Tax=Suillus TaxID=5379 RepID=UPI001B8685B1)

HSP 1 Score: 54.3 bits (129), Expect = 3.020e-6
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 1
Query:   10 KNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGC 297
            K++GNA F   +   A+  Y+ A+ A               ADD   T   NRAAA++KLG     E DC+  L + P   KALFRR QAR ALGC
Sbjct:   10 KDQGNAAFKTGDYPAAIGHYTSAILAN--------------ADD--PTFPLNRAAAYLKLGKNEDAERDCTTVLKLSPNNVKALFRRGQARMALGC 89          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A835ZHR7_9STRA (Protein unc-45 homolog B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.340e-6
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   10 KNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKA 258
            K  GNA FAA  +  AV +Y+  L    +  +  A A A     L+A LL NRA AH K G+ +AC  DCSAAL ++P RAKA
Sbjct:   11 KAAGNAAFAANQLGDAVAAYTAGLRLAESSTDTQAEATA-----LKAALLNNRAMAHWKAGNDQACLDDCSAALELEPRRAKA 88          
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Match: A0A8J9RZQ0_9CHLO (Probable mitochondrial import receptor subunit TOM34 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RZQ0_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 4.280e-6
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    7 LKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRATLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCDADALRD 318
            LK EGN LF A   + AVE Y  A A L+   + +A        D+R   + N A+  ++L D +AC S+CS  L +DP   KA +RR QA  AL   A A+ D
Sbjct:   85 LKEEGNRLFNAHRNSEAVEKYQRAKANLLGHTSQSAA-------DVRRKCMLNLASCFLQLKDYKACVSECSEVLKIDPDNMKAYYRRGQALLALQSHAAAVAD 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig166.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2J337_ARAVE1.020e-944.76Protein unc-45 homolog B n=2 Tax=Araneus ventricos... [more]
D7FIG6_ECTSI1.400e-948.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3SN90_EMIHU1.680e-943.43Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1E9U7_EMIHU1.890e-943.43Protein unc-45 homolog B n=2 Tax=Emiliania huxleyi... [more]
A0A7S0VX85_9CRYP1.760e-844.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A164MQB8_9AGAM7.060e-842.72TPR-like protein n=2 Tax=Sistotremastrum TaxID=139... [more]
UPI001F0736B33.750e-745.92protein unc-45 homolog A n=1 Tax=Hypomesus transpa... [more]
UPI001B8685B13.020e-640.63uncharacterized protein n=3 Tax=Suillus TaxID=5379... [more]
A0A835ZHR7_9STRA3.340e-645.78Protein unc-45 homolog B n=1 Tax=Tribonema minus T... [more]
A0A8J9RZQ0_9CHLO4.280e-639.42Probable mitochondrial import receptor subunit TOM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig166contigP-wetherbeei_contig166:14..340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIG6
PFAMsRPAP3_C,TPR_1,TPR_2,TPR_8
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K19870,ko:K21991
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-10
EggNOG OGsKOG4151@1|root,KOG4234@1|root,KOG4151@2759|Eukaryota,KOG4234@2759|Eukaryota
Descriptionprotein binding, bridging
Cds size327
COG categoryS
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.6635206-CDS-P-wetherbeei_contig166:13..3401683186091.6635206-CDS-P-wetherbeei_contig166:13..340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig166 14..340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig166.1.1prot_P-wetherbeei_contig166.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig166 14..340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig166.1.1

>prot_P-wetherbeei_contig166.1.1 ID=prot_P-wetherbeei_contig166.1.1|Name=mRNA_P-wetherbeei_contig166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MRLKNEGNALFAAENMTGAVESYSGALAALVTGANPAATAAAPVADDLRA
TLLTNRAAAHIKLGDTRACESDCSAALLVDPGRAKALFRRAQAREALGCD
ADALRDRKR
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mRNA from alignment at P-wetherbeei_contig166:14..340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig166.1.1 ID=mRNA_P-wetherbeei_contig166.1.1|Name=mRNA_P-wetherbeei_contig166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig166:14..340- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTCAAGAACGAGGGCAACGCCCTCTTCGCGGCGGAAAACATGAC CGGCGCGGTTGAGAGCTACAGCGGCGCCCTTGCCGCCCTCGTTACCGGCG CGAACCCGGCCGCGACAGCCGCCGCCCCCGTGGCAGACGACCTGCGGGCG ACGCTGCTGACGAACCGCGCCGCCGCCCACATCAAGCTGGGCGACACCCG CGCCTGCGAGAGCGACTGCTCCGCCGCGCTCCTGGTGGACCCTGGCCGCG CCAAGGCGCTCTTTCGGCGCGCACAGGCGCGGGAGGCGCTTGGCTGCGAC GCGGACGCTCTGCGGGACCGGAAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig166:14..340-

>mRNA_P-wetherbeei_contig166.1.1 ID=mRNA_P-wetherbeei_contig166.1.1|Name=mRNA_P-wetherbeei_contig166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig166:14..340- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTCAAGAACGAGGGCAACGCCCTCTTCGCGGCGGAAAACATGAC
CGGCGCGGTTGAGAGCTACAGCGGCGCCCTTGCCGCCCTCGTTACCGGCG
CGAACCCGGCCGCGACAGCCGCCGCCCCCGTGGCAGACGACCTGCGGGCG
ACGCTGCTGACGAACCGCGCCGCCGCCCACATCAAGCTGGGCGACACCCG
CGCCTGCGAGAGCGACTGCTCCGCCGCGCTCCTGGTGGACCCTGGCCGCG
CCAAGGCGCTCTTTCGGCGCGCACAGGCGCGGGAGGCGCTTGGCTGCGAC
GCGGACGCTCTGCGGGACCGGAAGCGG
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