mRNA_P-wetherbeei_contig1657.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1657.4.1
Unique NamemRNA_P-wetherbeei_contig1657.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1657.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1657contigP-wetherbeei_contig1657:3486..4433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size950
Hectar predicted targeting categoryother localisation
Exons1
Cds size930
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.86077-UTR-P-wetherbeei_contig1657:3485..35031683186090.86077-UTR-P-wetherbeei_contig1657:3485..3503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1657 3486..3503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.8698547-CDS-P-wetherbeei_contig1657:3503..44331683186090.8698547-CDS-P-wetherbeei_contig1657:3503..4433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1657 3504..4433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1657.4.1prot_P-wetherbeei_contig1657.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1657 3504..4433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1657.4.1

>prot_P-wetherbeei_contig1657.4.1 ID=prot_P-wetherbeei_contig1657.4.1|Name=mRNA_P-wetherbeei_contig1657.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=310bp
MAGRGGGGGGGGGGGGPGLGAPHIQLEGEIRAIFSALALILETVFGAKIT
AAPGSGSSGGTGGGSGDGGSGTGGGGGGGADGAGSGAAAAVRSGRGPRGG
GGAGMEAGGGGGGGVDAGSGRAEGRGKDGGKAAPPPAAAEGGGGSSNKGP
SNSAPAAAATAPAQRAAPAKAPTGSAAAAAAIPAAASAAKALEPPLALAR
PPPAGTSQAKAQPLAAAAANVAPAKAAPARAPPAPAAASPSAKTPASTGL
PTTAAAAPAAAFTAPHAAVTGAAASAARGKAPEVDKPGKAAAAAKSSLPP
PPVVAGPSTP
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mRNA from alignment at P-wetherbeei_contig1657:3486..4433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1657.4.1 ID=mRNA_P-wetherbeei_contig1657.4.1|Name=mRNA_P-wetherbeei_contig1657.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig1657:3486..4433+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGAACTGGCCGCGGCATGGCCGGGCGCGGCGGCGGCGGTGGGGGCGG
CGGCGGCGGCGGTGGTCCGGGTTTGGGCGCCCCCCACATTCAGCTGGAAG
GAGAAATCCGCGCCATCTTCTCCGCCTTGGCGCTCATCCTGGAGACCGTC
TTTGGTGCCAAGATCACCGCGGCTCCTGGATCTGGCAGCAGCGGCGGCAC
GGGCGGCGGCAGCGGCGACGGCGGTAGCGGCACGGGCGGCGGCGGCGGCG
GCGGCGCGGATGGCGCGGGCAGCGGAGCTGCTGCCGCTGTCCGTAGCGGT
CGGGGCCCCCGGGGCGGCGGCGGAGCAGGAATGGAAGCTGGCGGCGGTGG
CGGCGGCGGCGTCGACGCAGGCAGCGGTCGGGCTGAAGGGCGCGGGAAGG
ATGGCGGCAAGGCAGCGCCGCCGCCAGCAGCTGCCGAAGGCGGTGGCGGC
AGCAGCAACAAGGGGCCTTCCAACTCAGCGCCTGCTGCTGCCGCCACAGC
GCCGGCACAGAGGGCTGCGCCGGCCAAGGCACCTACCGGCAGCGCGGCCG
CCGCCGCCGCGATTCCGGCGGCCGCATCGGCGGCGAAAGCCCTCGAGCCC
CCGTTGGCGTTGGCACGACCGCCGCCTGCGGGAACTTCTCAGGCCAAGGC
ACAGCCTCTGGCGGCAGCGGCGGCAAATGTGGCGCCGGCGAAAGCAGCGC
CTGCACGTGCGCCGCCCGCACCTGCGGCTGCATCGCCTTCAGCAAAGACC
CCCGCCTCGACAGGGCTACCCACCACCGCTGCAGCCGCCCCTGCCGCTGC
GTTCACGGCGCCGCATGCCGCGGTTACAGGGGCGGCGGCGTCTGCCGCGC
GTGGGAAAGCCCCGGAAGTCGACAAGCCGGGAAAGGCGGCGGCGGCTGCG
AAGTCGTCGCTACCGCCGCCGCCGGTGGTAGCGGGCCCGTCTACTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1657:3486..4433+

>mRNA_P-wetherbeei_contig1657.4.1 ID=mRNA_P-wetherbeei_contig1657.4.1|Name=mRNA_P-wetherbeei_contig1657.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=930bp|location=Sequence derived from alignment at P-wetherbeei_contig1657:3486..4433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGCGCGGCGGCGGCGGTGGGGGCGGCGGCGGCGGCGGTGGTCC
GGGTTTGGGCGCCCCCCACATTCAGCTGGAAGGAGAAATCCGCGCCATCT
TCTCCGCCTTGGCGCTCATCCTGGAGACCGTCTTTGGTGCCAAGATCACC
GCGGCTCCTGGATCTGGCAGCAGCGGCGGCACGGGCGGCGGCAGCGGCGA
CGGCGGTAGCGGCACGGGCGGCGGCGGCGGCGGCGGCGCGGATGGCGCGG
GCAGCGGAGCTGCTGCCGCTGTCCGTAGCGGTCGGGGCCCCCGGGGCGGC
GGCGGAGCAGGAATGGAAGCTGGCGGCGGTGGCGGCGGCGGCGTCGACGC
AGGCAGCGGTCGGGCTGAAGGGCGCGGGAAGGATGGCGGCAAGGCAGCGC
CGCCGCCAGCAGCTGCCGAAGGCGGTGGCGGCAGCAGCAACAAGGGGCCT
TCCAACTCAGCGCCTGCTGCTGCCGCCACAGCGCCGGCACAGAGGGCTGC
GCCGGCCAAGGCACCTACCGGCAGCGCGGCCGCCGCCGCCGCGATTCCGG
CGGCCGCATCGGCGGCGAAAGCCCTCGAGCCCCCGTTGGCGTTGGCACGA
CCGCCGCCTGCGGGAACTTCTCAGGCCAAGGCACAGCCTCTGGCGGCAGC
GGCGGCAAATGTGGCGCCGGCGAAAGCAGCGCCTGCACGTGCGCCGCCCG
CACCTGCGGCTGCATCGCCTTCAGCAAAGACCCCCGCCTCGACAGGGCTA
CCCACCACCGCTGCAGCCGCCCCTGCCGCTGCGTTCACGGCGCCGCATGC
CGCGGTTACAGGGGCGGCGGCGTCTGCCGCGCGTGGGAAAGCCCCGGAAG
TCGACAAGCCGGGAAAGGCGGCGGCGGCTGCGAAGTCGTCGCTACCGCCG
CCGCCGGTGGTAGCGGGCCCGTCTACTCCA
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