mRNA_P-wetherbeei_contig1655.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1655.1.1
Unique NamemRNA_P-wetherbeei_contig1655.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1655.1.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.720e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 3 
Query:  276 ENFKQSSSARFTSVSRFERDFFSPMRNLGQQALDDFGGSDLLDATVRFEEAMARLAA--VGRASAGGGVAATDLMAARRAWDDGRTALNHYVATLNGL--AGDATGLRLAAVPADASG-AAARQPRYLAFKKELAKCQQGGVGVNMCAGIMRKYTGDG 734
            E  K  ++ R  +VSR ERDF+ PMR+L   ALDDFGG DL+ ATV+ E AMA LA    GR+  GGG  A     AR+ W+DGR+ALN Y ++LN +   G   G  LAAV A+ +G A++ + RY+A+KKELAKCQQGG+GVN+C  ++ +YT  G
Sbjct:  282 EQVKMPATGRVAAVSRMERDFYGPMRSLAS-ALDDFGGEDLVAATVKLEAAMAALAVETAGRSQRGGGTTAAQEQRARQLWEDGRSALNSYASSLNRIWQQGGGRGDVLAAVAAEPAGDASSARRRYIAYKKELAKCQQGGLGVNVCQNLLERYTAGG 438
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BLAST of mRNA_P-wetherbeei_contig1655.1.1 vs. uniprot
Match: A0A0G4G2V7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G2V7_VITBC)

HSP 1 Score: 110 bits (276), Expect = 4.890e-25
Identity = 65/150 (43.33%), Postives = 90/150 (60.00%), Query Frame = 3 
Query:  270 MIENFKQSSSARFTSVSRFERDFFSPMRNLGQQALDDFGGSDLLDATVRFEEAMARLAAVGRASAGGGVAATDLMAARRAWDDGRTALNHYVATLNGLAGDATGLRLAAVPADASGAAARQPRYLAFKKELAKCQQGGVGVNMCAGIMRK 719
            +++ FK S SARF SVSR +RDFFSPMR L +   +D GGSDL   T RFE +M RL +V +   GG V       A+ AW+ GR  +N Y+   N L  +   +    +   AS  + R+ +Y+  KK LAKCQQGGVGVN+C  ++++
Sbjct:  130 VLDQFKVSGSARFVSVSRMDRDFFSPMRLLAKSVPEDEGGSDLEQVTERFESSMRRLQSVAK-GVGGDVTKELKKEAQDAWESGRQDINTYMRLANQLIAEPAEVAPFTLLPSASDDSPRRDKYIKIKKVLAKCQQGGVGVNVCGDVLKQ 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR37_9STRA1.720e-3350.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G2V7_VITBC4.890e-2543.33Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1655contigP-wetherbeei_contig1655:2..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD33440
Model size724
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.39e-08
EggNOG OGs2ERQ7@1|root,2SUFH@2759|Eukaryota
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.228961-UTR-P-wetherbeei_contig1655:1..1091683186090.228961-UTR-P-wetherbeei_contig1655:1..109Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1655 2..109 +
1683186090.2732065-UTR-P-wetherbeei_contig1655:1232..13741683186090.2732065-UTR-P-wetherbeei_contig1655:1232..1374Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1655 1233..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.2409964-CDS-P-wetherbeei_contig1655:270..3661683186090.2409964-CDS-P-wetherbeei_contig1655:270..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1655 271..366 +
1683186090.2494001-CDS-P-wetherbeei_contig1655:553..7111683186090.2494001-CDS-P-wetherbeei_contig1655:553..711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1655 554..711 +
1683186090.264232-CDS-P-wetherbeei_contig1655:1012..12321683186090.264232-CDS-P-wetherbeei_contig1655:1012..1232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1655 1013..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1655.1.1prot_P-wetherbeei_contig1655.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1655 271..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1655.1.1

>prot_P-wetherbeei_contig1655.1.1 ID=prot_P-wetherbeei_contig1655.1.1|Name=mRNA_P-wetherbeei_contig1655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MIENFKQSSSARFTSVSRFERDFFSPMRNLGQQALDDFGGSDLLDATVRF
EEAMARLAAVGRASAGGGVAATDLMAARRAWDDGRTALNHYVATLNGLAG
DATGLRLAAVPADASGAAARQPRYLAFKKELAKCQQGGVGVNMCAGIMRK
YTGDGTV*
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mRNA from alignment at P-wetherbeei_contig1655:2..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1655.1.1 ID=mRNA_P-wetherbeei_contig1655.1.1|Name=mRNA_P-wetherbeei_contig1655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1373bp|location=Sequence derived from alignment at P-wetherbeei_contig1655:2..1374+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGATCAAGGCTGTCCTGCAATACGAGCCGCAGCTGCAATTGTCGAC
TGATTTTTACCTTTTTGACCTGCTTCCTCTTGTGCTGGAACCCAAGAGCT
GGGCAGAGGTGGGTTGATTTTTCTAACATTCTTCAATGACTGAGTCAACT
GATCCCTCTTCTATATTAATGTTTCTTCTCGCATTCATGCGTGTGCCTTG
ATAGGGCAGGACTTTCATTCAAGAGTTTGATGTTCTGACGCCCTTACTCT
GTTGATCTGCTCTATTCAGATGATCGAGAACTTTAAGCAATCTTCGAGTG
CACGGTTCACGAGCGTGTCGCGGTTCGAAAGGGACTTCTTCTCGCCGATG
CGCAACCTGGGACAGGTGCGCCGCTCTTGGCGCAGAAATTTGCAAGACAT
GAGATGCTGTCCTCCCTGCCCGTTCTTGCTGATGGGACACGGTCCTCTTT
CATCGAAGTGATCTCGAACGAACCGGGATGGCTTTTGGCCCCTGGTTCGC
CCCTCCCCTCGGCTCACGCCATCTTTCGGTGTCTTTAATGTGTTTTCTTT
AGCAGGCGCTCGACGATTTTGGCGGGTCGGACCTGCTGGACGCGACGGTC
CGTTTCGAGGAGGCCATGGCACGGCTCGCTGCCGTGGGGCGCGCCAGCGC
CGGTGGCGGCGTGGCGGCCACGGATCTGATGGCCGCGCGGAGGGCGTGGG
ACGATGGCAGGTGCGTGAGAGAGGAGCCGTGGAAGCGATAGGGATGGCAC
CTTTCTGTCAACGGCATGCTGGTGTTTGCTGGATTATACCTATTGGACGA
TCTATCTTAGCTGCTACTTTGTGGGGAGCGGTTTGTGTGCTTTCTGTTGG
CAACATCTGTGAAGTCATCGGTTATGCATGCCTGCTGTATCGCAAAAGCG
CCTGATTTATCCGCCGCATGCCTTGGGGTCCCAATCCCTGTTCGCCTTTT
TGTTCCTTTCGGATTCATTTCCTTTTGGATGCTTGCCCCCCGGCCCATTC
CCCGCCATCAGGACGGCTCTCAACCACTACGTCGCCACACTGAACGGCCT
GGCGGGAGACGCCACGGGCCTGCGGCTCGCGGCGGTGCCGGCGGACGCGT
CGGGCGCCGCCGCCCGCCAGCCGCGCTACCTGGCCTTCAAAAAGGAGCTC
GCGAAATGTCAGCAAGGCGGGGTAGGGGTGAACATGTGCGCTGGGATCAT
GCGGAAATATACTGGCGACGGGACGGTGTGAAAGGTCTCAACTGAAACCG
TCAACAGGGGCTCAGGTAATTTACACGTTACCGTGGTACGATAAAAGTTA
AAGAATATAAGTTGAAGAAGGAAGGATGCTCAAGCGCCACGTGGTCACGA
AAAGGAAAAAAAAGGCCTGTGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1655:2..1374+

>mRNA_P-wetherbeei_contig1655.1.1 ID=mRNA_P-wetherbeei_contig1655.1.1|Name=mRNA_P-wetherbeei_contig1655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig1655:2..1374+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGAGAACTTTAAGCAATCTTCGAGTGCACGGTTCACGAGCGTGTC
GCGGTTCGAAAGGGACTTCTTCTCGCCGATGCGCAACCTGGGACAGCAGG
CGCTCGACGATTTTGGCGGGTCGGACCTGCTGGACGCGACGGTCCGTTTC
GAGGAGGCCATGGCACGGCTCGCTGCCGTGGGGCGCGCCAGCGCCGGTGG
CGGCGTGGCGGCCACGGATCTGATGGCCGCGCGGAGGGCGTGGGACGATG
GCAGGACGGCTCTCAACCACTACGTCGCCACACTGAACGGCCTGGCGGGA
GACGCCACGGGCCTGCGGCTCGCGGCGGTGCCGGCGGACGCGTCGGGCGC
CGCCGCCCGCCAGCCGCGCTACCTGGCCTTCAAAAAGGAGCTCGCGAAAT
GTCAGCAAGGCGGGGTAGGGGTGAACATGTGCGCTGGGATCATGCGGAAA
TATACTGGCGACGGGACGGTGTGA
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