mRNA_P-wetherbeei_contig16539.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16539.1.1
Unique NamemRNA_P-wetherbeei_contig16539.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16539.1.1 vs. uniprot
Match: A0A836C9F9_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-12
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:  220 LGEVMRRFRVHARDVIELGLQDIGGGGCAGIDGRDGFEASTPLILPRSGVIVVSLGHLKALVYEGACLLFDAQRPAVAESAESLADTLR 486
            + +V+RRF VHARD+I LGL                     P ILPR  VIVV++GHLKAL+Y  +CL+F+A++P VA     LA+ +R
Sbjct:    1 MSDVLRRFGVHARDIISLGLDS-------------SSWTPPPAILPRGNVIVVAIGHLKALIYHNSCLVFEAKKPVVAAVTCELAELMR 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16539.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9F9_9STRA2.930e-1243.82Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16539contigP-wetherbeei_contig16539:878..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LPU8
Preferred nameMRS2
PFAMsCorA
Model size515
Max annot lvl2759|Eukaryota
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
Exons1
Evalue3.09e-18
EggNOG OGsKOG2662@1|root,KOG2662@2759|Eukaryota
EC2.7.11.1,3.1.1.17
Descriptionmagnesium ion transmembrane transporter activity
Cds size513
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.958034-CDS-P-wetherbeei_contig16539:877..13901683186089.958034-CDS-P-wetherbeei_contig16539:877..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16539 878..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16539.1.1prot_P-wetherbeei_contig16539.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16539 878..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16539.1.1

>prot_P-wetherbeei_contig16539.1.1 ID=prot_P-wetherbeei_contig16539.1.1|Name=mRNA_P-wetherbeei_contig16539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MTQCLARALCRSARQRAAPTFFASSWRPRPVFCLYFGASARPITSPHGAA
RFDRQFSVVEIDAAGAMRPKLVTLGEVMRRFRVHARDVIELGLQDIGGGG
CAGIDGRDGFEASTPLILPRSGVIVVSLGHLKALVYEGACLLFDAQRPAV
AESAESLADTLRHAAACAQVV
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mRNA from alignment at P-wetherbeei_contig16539:878..1390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16539.1.1 ID=mRNA_P-wetherbeei_contig16539.1.1|Name=mRNA_P-wetherbeei_contig16539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig16539:878..1390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCAATGCTTAGCGCGAGCATTGTGCCGGAGCGCTCGACAAAGAGC
AGCGCCAACTTTCTTTGCCTCCAGCTGGCGCCCCCGCCCCGTCTTTTGCC
TTTACTTCGGAGCCTCCGCGCGGCCAATCACGTCGCCGCATGGCGCGGCT
CGCTTCGACCGCCAGTTCAGCGTCGTCGAGATCGACGCCGCCGGCGCGAT
GCGGCCAAAGCTGGTAACGCTCGGCGAAGTCATGAGGCGTTTTCGCGTCC
ACGCCCGCGACGTCATCGAGCTCGGGCTGCAAGACATCGGCGGCGGCGGC
TGTGCCGGAATTGACGGCAGGGACGGCTTTGAGGCGTCGACGCCGCTCAT
CTTGCCCCGCAGCGGCGTCATCGTCGTGTCTCTCGGCCATTTAAAGGCGC
TCGTCTACGAAGGAGCCTGCCTCCTCTTCGACGCGCAGCGTCCCGCCGTC
GCAGAGAGCGCTGAGTCCCTGGCCGACACGCTGCGGCATGCGGCCGCCTG
CGCGCAAGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16539:878..1390+

>mRNA_P-wetherbeei_contig16539.1.1 ID=mRNA_P-wetherbeei_contig16539.1.1|Name=mRNA_P-wetherbeei_contig16539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig16539:878..1390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCAATGCTTAGCGCGAGCATTGTGCCGGAGCGCTCGACAAAGAGC
AGCGCCAACTTTCTTTGCCTCCAGCTGGCGCCCCCGCCCCGTCTTTTGCC
TTTACTTCGGAGCCTCCGCGCGGCCAATCACGTCGCCGCATGGCGCGGCT
CGCTTCGACCGCCAGTTCAGCGTCGTCGAGATCGACGCCGCCGGCGCGAT
GCGGCCAAAGCTGGTAACGCTCGGCGAAGTCATGAGGCGTTTTCGCGTCC
ACGCCCGCGACGTCATCGAGCTCGGGCTGCAAGACATCGGCGGCGGCGGC
TGTGCCGGAATTGACGGCAGGGACGGCTTTGAGGCGTCGACGCCGCTCAT
CTTGCCCCGCAGCGGCGTCATCGTCGTGTCTCTCGGCCATTTAAAGGCGC
TCGTCTACGAAGGAGCCTGCCTCCTCTTCGACGCGCAGCGTCCCGCCGTC
GCAGAGAGCGCTGAGTCCCTGGCCGACACGCTGCGGCATGCGGCCGCCTG
CGCGCAAGTCGTC
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