mRNA_P-wetherbeei_contig1653.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1653.6.1
Unique NamemRNA_P-wetherbeei_contig1653.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1653.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1653contigP-wetherbeei_contig1653:4311..6729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1836
Hectar predicted targeting categorysignal peptide
Exons4
Cds size1206
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1653.6.1prot_P-wetherbeei_contig1653.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1653 4626..6414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.6174388-UTR-P-wetherbeei_contig1653:4310..46251683186089.6174388-UTR-P-wetherbeei_contig1653:4310..4625Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1653 4311..4625 +
1683186089.6544561-UTR-P-wetherbeei_contig1653:6414..67291683186089.6544561-UTR-P-wetherbeei_contig1653:6414..6729Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1653 6415..6729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.625058-CDS-P-wetherbeei_contig1653:4625..49841683186089.625058-CDS-P-wetherbeei_contig1653:4625..4984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1653 4626..4984 +
1683186089.6322124-CDS-P-wetherbeei_contig1653:5149..53151683186089.6322124-CDS-P-wetherbeei_contig1653:5149..5315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1653 5150..5315 +
1683186089.6396441-CDS-P-wetherbeei_contig1653:5458..55961683186089.6396441-CDS-P-wetherbeei_contig1653:5458..5596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1653 5459..5596 +
1683186089.647057-CDS-P-wetherbeei_contig1653:5871..64141683186089.647057-CDS-P-wetherbeei_contig1653:5871..6414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1653 5872..6414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1653.6.1

>prot_P-wetherbeei_contig1653.6.1 ID=prot_P-wetherbeei_contig1653.6.1|Name=mRNA_P-wetherbeei_contig1653.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=402bp
MAPQSRFRPAAAAVATAAATVLLGATALFLGGRGAKSNVSAATVPYPLRR
NAAAAAAVAPSSGLCGDGSCENAYIDELSEIRESWGARVKSFMCSYAVRN
APTFGDMLFLFPSPGTTGSRSMSSFLGETCGWNVFHYASFFFGRDEDEIW
RSTRRGADDNWADPNWTGAGLMAPEAEALNLIDGKSDEFLDSHAILPDLI
PRGHDKPVDAVLDDPMCQLFFDTFHQFPNARFVLLHRDPVDWAESRRRKH
RRAPLPVIRGATSDCVTDASLDELAGAFAAFEAYVRCKVPPERLLEVDYF
AEIPQADWWAENVTAGAVAEAQVAAFAAAAGRPCLRYAPSEAVSEAAGIR
VVPPTNAGGDIAAEAAAADGGSTAAGGGGGGGGGGAVVDGVPVPGTLRRR
Q*
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mRNA from alignment at P-wetherbeei_contig1653:4311..6729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1653.6.1 ID=mRNA_P-wetherbeei_contig1653.6.1|Name=mRNA_P-wetherbeei_contig1653.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2419bp|location=Sequence derived from alignment at P-wetherbeei_contig1653:4311..6729+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAAACAGAAAAGTTGTCGCTCGCTCGCCAAAGGGCAATCTCGTCGATA
GACAGGGAGACGAGGCCGCGAGCGACCGCCACGCCAGCGGTTACACTGCA
CCACCACTTGTTGCTCATTGTTAAAGGCCTATTTGCTCATCGCTAAAGCC
AAGGCAGACGCTGCGAGAATCAAACAAACGATCGACGACCCTCGACATCA
ACCAAGGGGGCCCTCTTGAGGGCCGCAAACGTGCGGTAGTGGCGCCGCCT
GCGACCGGCACTACCGCTGGAGCCAGTTCGGCGTCCGGAAGGAGTTCCTG
GATTAGCTTTGCACCATGGCGCCGCAGAGCCGGTTTCGTCCAGCAGCAGC
GGCAGTCGCCACCGCCGCCGCCACCGTCCTCCTTGGGGCCACCGCGTTAT
TTTTGGGAGGCAGAGGCGCCAAAAGCAATGTATCAGCGGCCACAGTTCCG
TATCCACTGCGTAGGAACGCTGCAGCGGCGGCGGCGGTGGCTCCATCCAG
CGGCCTCTGCGGTGACGGCTCATGTGAGAACGCTTACATCGACGAACTCT
CTGAGATCCGGGAAAGCTGGGGAGCGCGCGTGAAAAGTTTCATGTGTTCA
TACGCCGTCAGAAATGCGCCAACATTCGGCGATATGCTGTTCCTCTTTCC
TAGTCCAGGAACCACAGGATCGAGGCAAGTCGAATCAAAGTTGCCCCCTT
TACATGATTTGATTGCGTTGACTCCTTCGCATGGGCGACTCACTGCCAAA
CATCATTCATCGCGTCCGCCGCTGCAACCGTCCCCACCAAGCCCACGGTC
ACTGCTTTCGCTGCTTCCCTCTCCTTCTCCCCTTTCCAGATCAATGAGCA
GCTTTTTGGGCGAGACGTGTGGGTGGAACGTCTTTCACTACGCATCGTTC
TTCTTTGGCAGAGACGAGGACGAAATTTGGCGCTCGACGCGACGAGGCGC
CGACGACAACTGGGCGGACCCAAACTGGACTGGCGCTGGCCTCATGGCCC
CGGAGGTGAGGCTGGCCCTGCGAAAAGCGAAGGGCTGGCCACGGATGATC
GCCGCCTCGCCCCTCTTCCTCTAGACGCTTACAAGGCAGCACACGAAAAG
TCCAACCTTGTTTTCGCACTCCTGCCTGCCCCGTCCCGCCGCATACAGGC
GGAAGCGCTAAACCTCATTGACGGCAAGTCAGACGAGTTTTTGGATTCCC
ACGCCATCCTGCCGGATCTGATTCCGAGAGGGCACGATAAGCCGGTGGAC
GCCGTCCTCGATGACCCCATGTGTCAGCTCTTCTTTGTGAGTCCCTTGCC
AACCAGCCAGCCGCTGCCGCCCTTGCTGCTGCCGTCGCCGCCAATATCGC
CGCTTCCGCCGCCATTGTCGCCGTTGCCGACTGCAACATGCTTTTTGTTT
TCTCGCCTTGCGGGGGGAGAAAAGCGGATTTGAGCGAATCGCAGTGCACG
CAGCAGCCAGCCGACCGCTATCCTCTGTGTCACTAAACTGCGTCCTCTAC
CAAGCTCAGAAAACCCTCCGTTCTCACGCGTTCGTTCTGTCTCTGTCGGA
GGCACTGGCAGGACACGTTCCACCAGTTCCCAAACGCGCGCTTCGTCCTG
CTGCACCGCGATCCCGTCGACTGGGCCGAGTCCCGGCGGCGGAAGCACCG
CCGCGCCCCACTGCCGGTCATCCGCGGCGCCACCTCCGACTGCGTCACCG
ATGCGTCCCTCGACGAGCTGGCGGGCGCCTTTGCGGCCTTTGAGGCCTAT
GTCCGGTGCAAGGTGCCACCGGAAAGGCTGCTAGAAGTAGACTACTTTGC
GGAGATTCCGCAGGCGGATTGGTGGGCGGAGAACGTTACTGCCGGCGCGG
TAGCCGAGGCACAGGTGGCGGCATTCGCGGCGGCGGCCGGGCGGCCTTGT
CTCCGGTACGCCCCGTCAGAGGCTGTATCGGAGGCAGCGGGTATAAGGGT
TGTCCCGCCGACGAACGCCGGCGGCGACATCGCCGCGGAGGCCGCTGCGG
CGGACGGCGGCAGCACTGCGGCAGGCGGTGGCGGCGGCGGCGGCGGCGGC
GGTGCGGTAGTTGACGGCGTGCCCGTGCCGGGAACGCTCCGAAGGCGGCA
GTAGAGGCGTGTGGAGGAATGGGTTTCTAACAGCCGCAATCCTCGAGCGA
TGCGCCGTCGCTGGGGAAAGGGCTAATTGTTGCGCATTTTAAATCCACGA
TGCCGCCCTTTATGAGTGAGGGTTTGTTGAGCTTGAGCCCGCGTGCAATT
CTCGTGAAGCGACTGTCTTGTGGGCCAGCAGGTGGAGCGGAACCAAGGCT
TTCAAACAGCTCCGTGCGACAGGCGGGCAAGTAAGAACCGACAGGCGCTG
CTGCTTGCGGCGGCGCTGCTCCGCCGCCACAAACGGCAGGCTTTCATATT
ACACTGCGTACAGTGACGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1653:4311..6729+

>mRNA_P-wetherbeei_contig1653.6.1 ID=mRNA_P-wetherbeei_contig1653.6.1|Name=mRNA_P-wetherbeei_contig1653.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig1653:4311..6729+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGCAGAGCCGGTTTCGTCCAGCAGCAGCGGCAGTCGCCACCGC
CGCCGCCACCGTCCTCCTTGGGGCCACCGCGTTATTTTTGGGAGGCAGAG
GCGCCAAAAGCAATGTATCAGCGGCCACAGTTCCGTATCCACTGCGTAGG
AACGCTGCAGCGGCGGCGGCGGTGGCTCCATCCAGCGGCCTCTGCGGTGA
CGGCTCATGTGAGAACGCTTACATCGACGAACTCTCTGAGATCCGGGAAA
GCTGGGGAGCGCGCGTGAAAAGTTTCATGTGTTCATACGCCGTCAGAAAT
GCGCCAACATTCGGCGATATGCTGTTCCTCTTTCCTAGTCCAGGAACCAC
AGGATCGAGATCAATGAGCAGCTTTTTGGGCGAGACGTGTGGGTGGAACG
TCTTTCACTACGCATCGTTCTTCTTTGGCAGAGACGAGGACGAAATTTGG
CGCTCGACGCGACGAGGCGCCGACGACAACTGGGCGGACCCAAACTGGAC
TGGCGCTGGCCTCATGGCCCCGGAGGCGGAAGCGCTAAACCTCATTGACG
GCAAGTCAGACGAGTTTTTGGATTCCCACGCCATCCTGCCGGATCTGATT
CCGAGAGGGCACGATAAGCCGGTGGACGCCGTCCTCGATGACCCCATGTG
TCAGCTCTTCTTTGACACGTTCCACCAGTTCCCAAACGCGCGCTTCGTCC
TGCTGCACCGCGATCCCGTCGACTGGGCCGAGTCCCGGCGGCGGAAGCAC
CGCCGCGCCCCACTGCCGGTCATCCGCGGCGCCACCTCCGACTGCGTCAC
CGATGCGTCCCTCGACGAGCTGGCGGGCGCCTTTGCGGCCTTTGAGGCCT
ATGTCCGGTGCAAGGTGCCACCGGAAAGGCTGCTAGAAGTAGACTACTTT
GCGGAGATTCCGCAGGCGGATTGGTGGGCGGAGAACGTTACTGCCGGCGC
GGTAGCCGAGGCACAGGTGGCGGCATTCGCGGCGGCGGCCGGGCGGCCTT
GTCTCCGGTACGCCCCGTCAGAGGCTGTATCGGAGGCAGCGGGTATAAGG
GTTGTCCCGCCGACGAACGCCGGCGGCGACATCGCCGCGGAGGCCGCTGC
GGCGGACGGCGGCAGCACTGCGGCAGGCGGTGGCGGCGGCGGCGGCGGCG
GCGGTGCGGTAGTTGACGGCGTGCCCGTGCCGGGAACGCTCCGAAGGCGG
CAGTAG
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