mRNA_P-wetherbeei_contig16528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16528.1.1
Unique NamemRNA_P-wetherbeei_contig16528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16528.1.1 vs. uniprot
Match: A0A5D6XL65_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL65_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-8
Identity = 53/183 (28.96%), Postives = 63/183 (34.43%), Query Frame = 3 
Query:  510 PGVPPPHYACHKCGQAGHWIQDCQDARSGGXXXXXXXXXXXXQRSEGGGXRGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGARPAGAPEDPYGAATAMLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGDLLCEPCEKSFKTESQLAAHAASHEPCRVPGCGFAASRKVVSAH 1058
            P  PP  Y CHKCG+ GHWIQDCQ A S                 E GG R                                   P  RP   P+ P  A  A   +                                 +C+ C+K+F  ESQ  AH  +H  C  PGCGFAAS++VV AH
Sbjct:  234 PRPPPSTYCCHKCGEPGHWIQDCQAASS---------------NRERGGDRSQRPASYAHPPRQLSLSSSQLQHHQAAPPLPDCDAP-QRPHHPPQ-PVDADDATPDSHATHEPDANDAALSLLPP------------SQWVCKGCDKTFALESQFLAHERTHVQCHAPGCGFAASKRVVGAH 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5D6XL65_9STRA2.480e-828.96Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16528contigP-wetherbeei_contig16528:452..1509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36331.EPrPI00000023818
PFAMsNUFIP1,zf-CCCH
Model size1058
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.76e-07
EggNOG OGsCOG5084@1|root,KOG1040@2759|Eukaryota,1MBI9@121069|Pythiales
Descriptionzinc finger protein. Source PGD
Cds size807
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.582377-UTR-P-wetherbeei_contig16528:451..7021683186089.582377-UTR-P-wetherbeei_contig16528:451..702Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16528 452..702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.592337-CDS-P-wetherbeei_contig16528:702..15091683186089.592337-CDS-P-wetherbeei_contig16528:702..1509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16528 703..1509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16528.1.1prot_P-wetherbeei_contig16528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16528 703..1509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16528.1.1

>prot_P-wetherbeei_contig16528.1.1 ID=prot_P-wetherbeei_contig16528.1.1|Name=mRNA_P-wetherbeei_contig16528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
MNPHAFFWQQQHQLPQQQQAPSPAQQQGQYQQAPEYSYGVGPPYGWAQQG
YQQQPRYGYGGHPSGPPGPPPVLISGFPDSWSAGGGPGVPPPHYACHKCG
QAGHWIQDCQDARSGGGGGGGGGGRGRGQRSEGGGGRGSIGGGGAGHGGR
GGGGQRGRGGRRGGGRGFSNGGPGARPAGAPEDPYGAATAMLAAVTAAAA
AAAAGIGGGNGGSRNDEDDDDGGDGDLLCEPCEKSFKTESQLAAHAASHE
PCRVPGCGFAASRKVVSAH
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mRNA from alignment at P-wetherbeei_contig16528:452..1509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16528.1.1 ID=mRNA_P-wetherbeei_contig16528.1.1|Name=mRNA_P-wetherbeei_contig16528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig16528:452..1509+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGACATCGACCGACGCACGCCAGGCAGTCCCCCATTGACCCATTGAG
CCGTGCCACTGTTCTGCGCGGTAATTTTCTTTTTCGGGGATTAGGAGGGA
ATGGAGCCTTTCGGCAGCCAAAGCCCGCGCTAGCAAACGGGAAACGTCTC
CTTCAGATAACCCCCCAGGCCTCTTCGTCTCTCGTTTACATCGTCCTGGC
CAGAGAAATTGGGTGCTTGTCGCTCTGTAAGCCTACCATTGCTTTGTCAC
AATGAACCCACACGCATTCTTTTGGCAACAGCAGCACCAGTTGCCACAAC
AGCAACAAGCTCCATCACCAGCGCAGCAGCAGGGCCAGTATCAGCAGGCG
CCGGAGTATTCGTACGGCGTGGGCCCACCTTACGGCTGGGCACAGCAAGG
CTACCAGCAACAGCCACGATATGGCTATGGTGGTCATCCGTCCGGACCTC
CAGGACCACCGCCGGTGCTCATATCTGGCTTCCCCGACTCGTGGAGCGCG
GGCGGGGGTCCTGGCGTCCCGCCTCCGCATTATGCGTGTCACAAGTGCGG
CCAGGCAGGCCATTGGATTCAAGACTGCCAAGATGCTCGGAGCGGTGGTG
GTGGCGGCGGCGGCGGCGGCGGTCGGGGAAGAGGGCAGAGAAGCGAAGGA
GGCGGCGGTCGGGGCAGCATTGGCGGCGGCGGCGCTGGGCATGGTGGTCG
CGGAGGAGGTGGTCAGCGCGGCAGGGGCGGCCGTCGCGGCGGCGGCCGCG
GCTTCAGCAACGGCGGCCCCGGTGCGCGGCCGGCCGGTGCGCCAGAAGAT
CCTTACGGTGCGGCCACGGCCATGCTGGCAGCCGTTACTGCAGCAGCCGC
TGCCGCCGCCGCTGGAATCGGCGGTGGAAACGGTGGCAGCAGAAACGATG
AGGACGACGACGACGGTGGCGACGGCGACTTACTCTGCGAGCCGTGCGAA
AAGTCCTTCAAGACGGAGTCGCAGCTGGCCGCTCATGCCGCCTCCCACGA
ACCATGCCGCGTCCCAGGCTGCGGCTTTGCCGCGTCGCGCAAGGTCGTGT
CGGCACAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16528:452..1509+

>mRNA_P-wetherbeei_contig16528.1.1 ID=mRNA_P-wetherbeei_contig16528.1.1|Name=mRNA_P-wetherbeei_contig16528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig16528:452..1509+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCACACGCATTCTTTTGGCAACAGCAGCACCAGTTGCCACAACA
GCAACAAGCTCCATCACCAGCGCAGCAGCAGGGCCAGTATCAGCAGGCGC
CGGAGTATTCGTACGGCGTGGGCCCACCTTACGGCTGGGCACAGCAAGGC
TACCAGCAACAGCCACGATATGGCTATGGTGGTCATCCGTCCGGACCTCC
AGGACCACCGCCGGTGCTCATATCTGGCTTCCCCGACTCGTGGAGCGCGG
GCGGGGGTCCTGGCGTCCCGCCTCCGCATTATGCGTGTCACAAGTGCGGC
CAGGCAGGCCATTGGATTCAAGACTGCCAAGATGCTCGGAGCGGTGGTGG
TGGCGGCGGCGGCGGCGGCGGTCGGGGAAGAGGGCAGAGAAGCGAAGGAG
GCGGCGGTCGGGGCAGCATTGGCGGCGGCGGCGCTGGGCATGGTGGTCGC
GGAGGAGGTGGTCAGCGCGGCAGGGGCGGCCGTCGCGGCGGCGGCCGCGG
CTTCAGCAACGGCGGCCCCGGTGCGCGGCCGGCCGGTGCGCCAGAAGATC
CTTACGGTGCGGCCACGGCCATGCTGGCAGCCGTTACTGCAGCAGCCGCT
GCCGCCGCCGCTGGAATCGGCGGTGGAAACGGTGGCAGCAGAAACGATGA
GGACGACGACGACGGTGGCGACGGCGACTTACTCTGCGAGCCGTGCGAAA
AGTCCTTCAAGACGGAGTCGCAGCTGGCCGCTCATGCCGCCTCCCACGAA
CCATGCCGCGTCCCAGGCTGCGGCTTTGCCGCGTCGCGCAAGGTCGTGTC
GGCACAC
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