mRNA_P-wetherbeei_contig16526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16526.1.1
Unique NamemRNA_P-wetherbeei_contig16526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16526.1.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-12
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 SILNAVNCTAAPNCTAIGRDDCSVSTGAGL-----CGRCLDGYLGANSYSNTACKNASAVPPHCSNLVEDSDETDVDCGGDDC 234
            S LNA NCT AP+C A+ RDDC      GL     CG C+ G++G     N+ C + +A    CS+  ++ DETDVDCGG  C
Sbjct:  909 SSLNAANCTVAPDCAALNRDDCGTD---GLREENTCGECVSGFVGVVGPHNSLCVDTTAFDASCSDGEKNGDETDVDCGGPSC 988
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BLAST of mRNA_P-wetherbeei_contig16526.1.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-12
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 SILNAVNCTAAPNCTAIGRDDCSVSTGAGL-----CGRCLDGYLGANSYSNTACKNASAVPPHCSNLVEDSDETDVDCGGDDC 234
            S LNA NCT AP+C A+ RDDC      GL     CG C+ G+ G     N+ C + +A+   CS+  ++ DETDVDCGG  C
Sbjct:  808 SSLNAANCTVAPDCAALNRDDCGTD---GLREDNTCGECVSGFTGVVGPHNSLCVDTTALDATCSDGEKNGDETDVDCGGSSC 887
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BLAST of mRNA_P-wetherbeei_contig16526.1.1 vs. uniprot
Match: A0A7S3HJL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJL8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.910e-9
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:    1 SILNAVNCTAAPNCTAIGRDDCSVSTGAGLCGRCLDGYLGANSYSNTACKNASAVPPHCSNLVEDSDETDVDCG 222
            ++LNAVNC++APNCTA+ R  C     A  CG C  GY+G    SN  C   SAV      L   S E+D DCG
Sbjct:   33 AVLNAVNCSSAPNCTALHRQRCQSI--AHTCGACETGYIGETGSSNAFCVR-SAVASGGRRLTAQSCESDADCG 103
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BLAST of mRNA_P-wetherbeei_contig16526.1.1 vs. uniprot
Match: A0A482S260_9ARCH (REJ domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S260_9ARCH)

HSP 1 Score: 49.7 bits (117), Expect = 4.600e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 SILNAVNCTAAPNCTAIGRDDCSVSTGAGLCGRCLDGYLGANSYSNTACKNASAV 165
            S++N VNCT AP+C+ + R+ C  +     CG+CL  Y G +   NTAC +AS V
Sbjct:  723 SVVNRVNCTLAPDCSTLKREQCEKTDH--TCGKCLRSYTGDSGDKNTACLSASDV 775
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDC0_9PHAE1.160e-1244.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U0_ECTSI1.160e-1244.58REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3HJL8_9STRA7.910e-945.95Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482S260_9ARCH4.600e-543.64REJ domain-containing protein (Fragment) n=1 Tax=a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16526contigP-wetherbeei_contig16526:70..303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008608054.1
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.24e-05
EggNOG OGs2CBYM@1|root,2QPWV@2759|Eukaryota
DescriptionFibronectin type 3 domain
Cds size234
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186089.55351-CDS-P-wetherbeei_contig16526:69..3031683186089.55351-CDS-P-wetherbeei_contig16526:69..303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16526 70..303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16526.1.1prot_P-wetherbeei_contig16526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16526 70..303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16526.1.1

>prot_P-wetherbeei_contig16526.1.1 ID=prot_P-wetherbeei_contig16526.1.1|Name=mRNA_P-wetherbeei_contig16526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
SILNAVNCTAAPNCTAIGRDDCSVSTGAGLCGRCLDGYLGANSYSNTACK
NASAVPPHCSNLVEDSDETDVDCGGDDC
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mRNA from alignment at P-wetherbeei_contig16526:70..303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16526.1.1 ID=mRNA_P-wetherbeei_contig16526.1.1|Name=mRNA_P-wetherbeei_contig16526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig16526:70..303- (Phaeothamnion wetherbeei SAG_119_79)
AGTATCCTTAACGCGGTCAACTGCACGGCGGCTCCCAACTGCACCGCCAT
CGGTCGCGATGACTGCTCCGTCTCCACAGGCGCCGGCCTCTGCGGTCGAT
GCCTGGACGGTTATCTGGGCGCCAACAGCTACTCCAACACGGCCTGCAAG
AACGCCTCCGCGGTGCCGCCGCACTGCAGCAATTTAGTTGAAGACTCGGA
CGAGACAGACGTCGATTGCGGCGGCGATGACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16526:70..303-

>mRNA_P-wetherbeei_contig16526.1.1 ID=mRNA_P-wetherbeei_contig16526.1.1|Name=mRNA_P-wetherbeei_contig16526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig16526:70..303- (Phaeothamnion wetherbeei SAG_119_79)
AGTATCCTTAACGCGGTCAACTGCACGGCGGCTCCCAACTGCACCGCCAT
CGGTCGCGATGACTGCTCCGTCTCCACAGGCGCCGGCCTCTGCGGTCGAT
GCCTGGACGGTTATCTGGGCGCCAACAGCTACTCCAACACGGCCTGCAAG
AACGCCTCCGCGGTGCCGCCGCACTGCAGCAATTTAGTTGAAGACTCGGA
CGAGACAGACGTCGATTGCGGCGGCGATGACTGC
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