mRNA_P-wetherbeei_contig1648.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1648.3.2
Unique NamemRNA_P-wetherbeei_contig1648.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.500e-41
Identity = 100/282 (35.46%), Postives = 152/282 (53.90%), Query Frame = 3
Query:  288 GRVNKEKQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAG--GXXXXXXXXXXXXXXXGFRQPQFGGSPQQQS---FNGXXXXXXXXXXGDGMMA---FTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            GR ++EKQ+I+PLTI+ ++ ++ D PD K  VD  E+  V++VG I D+   STN+ + +EDGTG +D ++F + DES+ + ERR    +  +V V G ++ +  K       +H+   +IRP+EDTN++T H LE IY HL +T GPL    GGAA G  G               GF +   GG+ QQ +   FNG          G G M         Q +++ F       G+S+      L P+G+   ++R+ V  L+ EGH+Y+T D+ H+KST
Sbjct:   28 GRPSREKQSIMPLTIKQVLESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDESQLQTERRSRCREGVYVAVVGQIKRWQDK-------LHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQ--GGAAQQGNYGAFNG----------GGGEMDSNNLAPLHQKLLDIFQADTNPHGLSLDYCADVLKPQGIGYDDIRDAVVYLSSEGHIYTTVDDFHYKST 290          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A7S2SSA9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSA9_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.690e-39
Identity = 112/325 (34.46%), Postives = 150/325 (46.15%), Query Frame = 3
Query:  147 EGRMEYGAQGG--GYXXXXXXXFIQGANGSPGYPDGSPAGXXXXXXXXXGRVNKEKQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFT--GGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            EG  +YG+ GG  G+          G +G      G  A           + ++++QT+IP TIR I  A     D    +D  EL QV++V  +  V   ST   Y VED TG++  +M++D DE+E    RR A  Q  +VR++  ++ F+G+ S       +T  +IRP+ED NE+T H LE IY+HL HT+GP  APA   AAG                GF  P         +  G            G   FT  Q   +E           G+ +Q  VQQLG  G  A  VR  V  LA EGHLYST DEEH+K T
Sbjct:    4 EGGFDYGSTGGFGGFGGPSDGLAFGGGSGG-----GFMASQTDGASPGTKKASRDRQTVIPFTIRQIKGATIGHADDPVKIDGVELAQVRLVANVMQVTEQSTYVVYDVEDCTGMIQVKMWNDQDENEMTATRRAACRQGVYVRIHAYLKVFNGQIS-------VTAVDIRPVEDQNEITCHMLEAIYIHLQHTQGPKQAPA--TAAG-----WNSTSSGFGTGGFNPPPGNNLSSTMALEGV----------SGNSGFTPVQAKALEAVNQIDSMDGPGVHVQAIVQQLGTSGFDAGAVRAAVEFLASEGHLYSTVDEEHYKVT 299          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A2D4CEA7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEA7_PYTIN)

HSP 1 Score: 135 bits (341), Expect = 2.580e-32
Identity = 97/276 (35.14%), Postives = 148/276 (53.62%), Query Frame = 3
Query:  291 RVNKEKQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAG--GXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGM-MAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            R+ ++ QT++P+T+R ++N  + + D    VD  E+  V++VG + +VV  STN ++ ++DGTG++D R+F   D+ E+  E    L    +VR  GS+R F  + S       +    + PI D NE+T+H LE IYVH  HT+GPL +  G  AA   GXXXXXXXXXX      F QPQ   +     + G             M  +F+ +Q+ +++       + G+ I     QL  R +T  ++R+ +  L  EGH+YST DE HFK T
Sbjct:   46 RIARDAQTLVPVTVRQLLN--RSETDDSIRVDGHEMSNVRVVGLLGNVVPHSTNVNFQLDDGTGVIDGRLFLHGDDLERAEEEIAKLRDGMYVRAVGSLRQFQDRLS-------LNCFTLTPITDFNEITHHFLETIYVHCYHTKGPLQSSGGAKAAADSGXXXXXXXXXXGSQLNAFGQPQQSWNQMNSGYLGHSGGAAMGAMDYNMESSFSPEQKAILDVLGTCTSDRGVKIDEIFGQLRGR-ITEDQLRDALNYLTSEGHVYSTIDENHFKRT 311          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A7S2B4J1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B4J1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.860e-31
Identity = 101/249 (40.56%), Postives = 137/249 (55.02%), Query Frame = 3
Query:  366 DGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGG-GETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            D  + VD  ++ Q+K+VG I  +   ST + Y +EDGTG++DC+++ D+ +SE + E+R    Q ++VR  G +R F G AS       + + ++RP+ D NE+T+H LE IYVHL +T+G  NA         XXXXXXXXXXXX   GF  P    +      +           G G   F+  Q  V+  FT  G GE G SI  AV+ L   G     VRE V  L+ EGHLYST D+EHFKST
Sbjct:   11 DSNYKVDGQDIHQLKLVGNILSIEEHSTYAVYKIEDGTGVVDCKLWIDAGDSEADAEKRALCRQGSYVRAVGVLRDFQGNAS-------VQLYDMRPVTDHNEITHHMLEAIYVHLQNTKGSKNA-----GQPXXXXXXXXXXXXXGVGGFNAPAVNTNLNSAMAS----------DGQGSGDFSTVQTEVLAYFTNNGSGEEGASINDAVKSLCANGHHDQAVRETVEFLSNEGHLYSTIDDEHFKST 237          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: L1IVT0_GUITC (Replication protein A2, 32kDa n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IVT0_GUITC)

HSP 1 Score: 130 bits (326), Expect = 1.850e-30
Identity = 94/276 (34.06%), Postives = 133/276 (48.19%), Query Frame = 3
Query:  288 GRVNKEKQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPL--NAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGP---RGVTAAEVREIVGQLAGEGHLYSTTDEEHF 1100
            G+ +  ++ ++P++I+ ++NA QD  D    +D  + +QV I+ +I DV   ST+ ++ +EDGTG +D  M+ D DESE  V  R   V  T+VRV G VR  +GK S       M   ++R + D NELTYH  + I+ HL +TRGPL  + P  G  +                 GF       SP Q    G          G  +             F   G  TG+SI   VQQ+     R V+ AEV   +  LA +GH+YST DEEHF
Sbjct:   27 GKKSNAEKGMLPVSIKQVMNAPQDSQDEDIKIDGRDTKQVTIIAYIVDVKETSTSVTFSLEDGTGNIDAIMWIDQDESEFMVRSRAEWVVGTYVRVVGQVRSHNGKRS-------MVAFHLRTVTDFNELTYHLFDTIHAHLYNTRGPLADSKPQTGFPSSSFQSPGKPSMGP----GFT------SPSQPGGAGAGRVDSSRPAGGPVTDMREAVHKAFIDFGATGDLTGLSIDNCVQQVSRVMGRSVSRAEVSSHIENLALDGHIYSTIDEEHF 285          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.400e-30
Identity = 97/281 (34.52%), Postives = 141/281 (50.18%), Query Frame = 3
Query:  306 KQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDE--SEQEVERRDALVQHTFVRVYGSVRFF-DGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXG----------DGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            +Q+++ + I+ ++ ++    D    +D  ++ Q+K+VG I +V   STN+ Y VED TG L  +MFH+  E  +++  E+R      T+VRV+G+VR + D + S AY         + PI D +E+T HALE IY HL +T+GPL  P   +  GG               G   P F G   Q  F      XXXXXX           +G   FT  QQ V + F G   E G SI      L   G++  +V   V  L+ EGHLYST D++H++ST
Sbjct:   64 QQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAY--------TMTPITDMDEVTLHALETIYTHLFNTKGPL--PGKASTFGGAGVAQPMN-------GVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGADEEQGRSIAEVADSLTREGISRTDVSTAVQFLSSEGHLYSTIDDDHYRST 327          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A1Y1Z7U3_9FUNG (Replication protein A, subunit RPA32 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z7U3_9FUNG)

HSP 1 Score: 127 bits (320), Expect = 9.390e-30
Identity = 89/287 (31.01%), Postives = 134/287 (46.69%), Query Frame = 3
Query:  249 SPAGXXXXXXXXXGRVNKEKQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            SP G          R     Q + P++I+ ++ A Q   D  F VD  EL Q+  +G IR     STN SYIVEDGTG +D R + ++D++E + ++R  LV+  +VRV G  + F  K        H+   ++RPIED NE+T+H LEV+YVHL  TR P     G                     G+ QP F G P   +               G     + + ++    +      G+ +++  Q+L  +    AE+ + +  L GEGHLYST D++H + T
Sbjct:   16 SPFGESASTPTGTKRGGAAAQNLTPVSIKQLLEATQIHADAPFKVDEHELSQITFIGIIRRQSEQSTNVSYIVEDGTGSIDVRTWLENDDNEIQQQKRAQLVEGIYVRVVGQFKQFASKR-------HVVAFSMRPIEDYNEITHHFLEVVYVHLFRTRNPSVKHEG-------------------EQGY-QPSFSGDPFNPTGQYGNQAYKQPEPVYGNEFKPSHKAIIYAIKSFPDTNEGVHVESIAQKLSSQ-FGRAEISQAIEWLVGEGHLYSTIDDDHVRCT 274          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A8J1Y0G4_OWEFU (Ofus.G111103 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y0G4_OWEFU)

HSP 1 Score: 125 bits (314), Expect = 5.320e-29
Identity = 94/289 (32.53%), Postives = 141/289 (48.79%), Query Frame = 3
Query:  249 SPAGXXXXXXXXXGRVNKEKQT-IIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTG-LLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            SPAG         G   + + + IIP TI  +++A  D    +F+ D  EL QV IVG ++ V    T   Y ++DGTG +++ + F D+DES  E ER   ++++T+VRVYG++R F GK        ++T   + PI D NELT H LE I VHL      L  P       G                    +   +P + ++ G           D  M+   +QQ++         E GISIQ  +QQL  RG+    +R+ V  L+GEGH++ST D++H++ST
Sbjct:   19 SPAGGGFSSPQSQGGEKRARPSNIIPCTIAQVLSANHD--GDRFIADGFELHQVTIVGLVKSVSVAPTRIDYGLDDGTGPIIEVKQFVDNDESVPEEERVSPMMENTYVRVYGNLRSFQGK-------QNITAFKVLPITDMNELTSHILETIKVHL-----ELTQPVSANQTNGHH------------------ETNATPAKNTYAGAMT--------DNSMS-NVQQQVLTIIRGSASDEAGISIQNIMQQL--RGLPEKAIRDSVEFLSGEGHIFSTIDDDHYRST 264          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A1V9Z400_9STRA (Replication protein A 32 kDa subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z400_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.470e-29
Identity = 88/283 (31.10%), Postives = 136/283 (48.06%), Query Frame = 3
Query:  288 GRVNKEKQTIIPLTIRMIVNA-KQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNA--------PAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            G  +++ QT+ P+T+R ++ A + +  D    VD  E+  V+IVG + DV   STN ++ V DGTGL+  R+F  +D+   + +  ++L    +V   G++R F GK S       +T  ++ P+E+ N++T+H LE IY HL +  G LN+        P  GA  GG                F     GG  QQ ++                      QQ +++       + G+SI    QQL  R +  A++RE +G L  EGH+YST DE HFK T
Sbjct:   28 GGNSRDNQTLTPVTVRQLMAAIRAEGGDDTVHVDGKEVNNVEIVGLLTDVSQNSTNITFSVNDGTGLISARLFLQADDDHYQQQLVESLRDGVYVAAVGNLRTFGGKTS-------LTCFSVTPVENFNQVTHHFLECIYTHLRNVHGALNSAPTAMKQDPGFGAQTGGYNS-------------FGMSTGGGFGQQSTYQNFAATDSGFSD--------PGQQAILDILGASSLDMGLSIDQIKQQLNGR-LNDAQLREALGYLTNEGHIYSTIDENHFKRT 281          
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Match: A0A433QK24_9FUNG (RPA_C domain-containing protein (Fragment) n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QK24_9FUNG)

HSP 1 Score: 127 bits (318), Expect = 9.600e-29
Identity = 82/267 (30.71%), Postives = 134/267 (50.19%), Query Frame = 3
Query:  309 QTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNSSYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGKASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGAAAGGXXXXXXXXXXXXXXXGFRQPQFGGSPQQQSFNGXXXXXXXXXXGDGMMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQLAGEGHLYSTTDEEHFKST 1109
            Q++ P+T++ ++ A Q   D  F +D  ++ QV  V  IR++   STN SY++EDGTG +D R + D D+S+ E ++R    +  ++RV G +  ++ K        H+   +IRP++D NE++YH L+ +YVHL+ T+G L + A  AAA                         G  +  + NG           D  +    KQ+        G  + GI +Q  V+QLG       E+R+ +  L+GEGHL+ST D++H + T
Sbjct:  108 QSLRPVTVKQLITAVQPHADADFKIDGGDISQVTFVAVIREITEQSTNVSYLMEDGTGQIDVRKWIDVDDSDHEAQKRSEWREGAYMRVIGHLNLYNQKR-------HVVAYHIRPVKDHNEVSYHQLDALYVHLMFTKGLLPSLATPAAAASNGNGHSFNGSAYNPHNASA----GIYRTGTANGESSRFPNPLYND--IIKITKQR--------GDAQEGIHVQELVRQLGQ--FPPNEIRQAIEWLSGEGHLFSTIDDDHVQVT 351          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1648.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU42_9STRA2.500e-4135.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SSA9_9STRA1.690e-3934.46Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2D4CEA7_PYTIN2.580e-3235.14Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S2B4J1_9STRA2.860e-3140.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
L1IVT0_GUITC1.850e-3034.06Replication protein A2, 32kDa n=2 Tax=Guillardia t... [more]
D8LPM7_ECTSI2.400e-3034.52RPA_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1Y1Z7U3_9FUNG9.390e-3031.01Replication protein A, subunit RPA32 n=1 Tax=Basid... [more]
A0A8J1Y0G4_OWEFU5.320e-2932.53Ofus.G111103 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A1V9Z400_9STRA5.470e-2931.10Replication protein A 32 kDa subunit n=1 Tax=Achly... [more]
A0A433QK24_9FUNG9.600e-2930.71RPA_C domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1648contigP-wetherbeei_contig1648:1200..4072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPM7
Preferred nameRPA2
PFAMsRPA_C,tRNA_anti-codon
Model size1574
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999,ko:K10739,ko:K10741
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03420,ko03430,ko03440,ko03460,map00230,map00240,map01100,map03020,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00182,M00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000082,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000785,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005662,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006269,GO:0006270,GO:0006278,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0010629,GO:0010833,GO:0010948,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0019985,GO:0022402,GO:0022414,GO:0022607,GO:0030491,GO:0030894,GO:0031323,GO:0031334,GO:0031570,GO:0031571,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032392,GO:0032446,GO:0032508,GO:0032774,GO:0032991,GO:0032993,GO:0033036,GO:0033260,GO:0033365,GO:0033554,GO:0033683,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0036297,GO:0042162,GO:0042276,GO:0042592,GO:0042769,GO:0043047,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044819,GO:0044843,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0047485,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051096,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051606,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070727,GO:0070987,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140013,GO:1900034,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902295,GO:1902318,GO:1902806,GO:1902807,GO:1902969,GO:1902981,GO:1903046,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2000779,GO:2001020
Exons5
Evalue1.1e-32
EggNOG OGsCOG5235@1|root,KOG3108@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_004810.1
EC2.7.7.6
DescriptionDNA metabolic process
Cds size963
COG categoryL
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1648.3.2prot_P-wetherbeei_contig1648.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1648 1656..3610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.0602727-UTR-P-wetherbeei_contig1648:1199..16551683186088.0602727-UTR-P-wetherbeei_contig1648:1199..1655Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1648 1200..1655 -
1683186088.1108687-UTR-P-wetherbeei_contig1648:3610..36431683186088.1108687-UTR-P-wetherbeei_contig1648:3610..3643Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1648 3611..3643 -
1683186088.1202583-UTR-P-wetherbeei_contig1648:3950..40721683186088.1202583-UTR-P-wetherbeei_contig1648:3950..4072Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1648 3951..4072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.0721667-CDS-P-wetherbeei_contig1648:1655..17421683186088.0721667-CDS-P-wetherbeei_contig1648:1655..1742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1648 1656..1742 -
1683186088.0817091-CDS-P-wetherbeei_contig1648:1991..23961683186088.0817091-CDS-P-wetherbeei_contig1648:1991..2396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1648 1992..2396 -
1683186088.0920362-CDS-P-wetherbeei_contig1648:2738..29601683186088.0920362-CDS-P-wetherbeei_contig1648:2738..2960Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1648 2739..2960 -
1683186088.101572-CDS-P-wetherbeei_contig1648:3361..36101683186088.101572-CDS-P-wetherbeei_contig1648:3361..3610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1648 3362..3610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1648.3.2

>prot_P-wetherbeei_contig1648.3.2 ID=prot_P-wetherbeei_contig1648.3.2|Name=mRNA_P-wetherbeei_contig1648.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MEYGAQGGGYFGGGGGGFIQGANGSPGYPDGSPAGGGGGGGGAGGRVNKE
KQTIIPLTIRMIVNAKQDQPDGKFMVDNCELQQVKIVGFIRDVVAMSTNS
SYIVEDGTGLLDCRMFHDSDESEQEVERRDALVQHTFVRVYGSVRFFDGK
ASDAYGTMHMTVNNIRPIEDTNELTYHALEVIYVHLLHTRGPLNAPAGGA
AAGGGFAVGGGGFGMGGGGGFRQPQFGGSPQQQSFNGGGMGMGIGGGGDG
MMAFTAKQQMVVECFTGGGGETGISIQTAVQQLGPRGVTAAEVREIVGQL
AGEGHLYSTTDEEHFKSTNG*
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mRNA from alignment at P-wetherbeei_contig1648:1200..4072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1648.3.2 ID=mRNA_P-wetherbeei_contig1648.3.2|Name=mRNA_P-wetherbeei_contig1648.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2873bp|location=Sequence derived from alignment at P-wetherbeei_contig1648:1200..4072- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGTCGGTCTTGCCCTCGAGCTATCCCAGCGTCTCAGTTTGAATCGCG CGGGAACCTGATTCAAATATTGTTGAAACCAGGTGATCACAAAAACATAC CACCGAGACAGTGGAATAGCAGGTACTCTTTCTGCACTTTTGAGGCTCAC GTTGGGTCAGCGCGCTAGTATTCCTTCTTCTCCCCTTGTTATTGATTGTG TGATTCGAGGATTTTAAAAGGTGGTCACATAGTTTTGGTGAAAACATTGG AGTTAAGTAAACCATGGAGTTAAAGTGTCGAGTGTTTGTGGGTGGTGAAG TGTTGATTTTTATTTACGGGTTCTTAGGTAGGTCATTCAAATGAGCCACT TTGCGTGTCGTTCATTGAACCTCCGCTGCTCTCGCCCTCGTTCCATCTCC ACGACACTTTTTTGTCATTGAATGCTCAGGCTAAAAACGCAACTTCTAAA AGGGAAGGAAGGATGGAGTACGGCGCCCAGGGCGGGGGCTACTTTGGCGG CGGCGGAGGCGGCTTCATCCAAGGCGCCAACGGCTCCCCGGGCTACCCGG ACGGCTCGCCGGCCGGGGGCGGCGGCGGCGGCGGCGGAGCGGGCGGGCGA GTGAACAAGGAGAAGCAGACGATCATCCCGCTGACGATCCGGATGATTGT CAATGCCAAGCAGGACCAGCCGGACGGGAAGTTTATGGTTGACAACTGCG AGCTGCAGCAGGTGAGACAAAGAGAGAGGCGGGCGGAGCGGCGAAGGAAG AGGATTGATGGGAAAATACCTTGTTTGCTGCGGCACGCCGAAGATCCTTT TTCCATCTGTATGCATATTCTGACTCTGCAACAGTTTCGAAACGCCGATG GTTTTCAGCTTGTATATTTTCGCTCTGCGATCACGCGTCGTGGCGTGTAA GCCTCCGGTCTGCTGCTGCCACCGCCCTTCCCATCTTGCACGATGCCGCA TCCAGCGACGCAATAACAACTGCCATGACCGTCACCGTCATTAACACCGC ACCACAACCATAGCGCTGACGCACGCGCCAACCCTTCTCTTTCCGTCGCT GTCGTCACCGCCACCGCAACCACTGGCTGCTACGCCACTACCCCAACGCC CCGTTTGGACAGGTGAAGATCGTGGGGTTCATCCGGGACGTGGTGGCCAT GTCGACCAACTCGTCGTACATCGTGGAGGACGGCACGGGGCTGCTCGACT GCCGCATGTTCCACGACAGCGACGAGAGCGAGCAGGAGGTTGAGCGCCGC GACGCGCTCGTGCAGCACACCTTTGTGCGCGTCTATGGCTCCGTGCGCTT CTTTGACGGCAAGGCGAGCGACGCATACGGGACGGTGGAGGGCGAGGCGT TTTATTGCTTCGTTTTGGCTTGGCTTTGTTTGCTTGCTTCGGGCCAAGCG GTAGCGGCAGTGGCAGGTGCAGTGTTTTTGCGTTGCAGTGGTGTGTTGTA AAATTTTAGCCTTATTTTTGTTAGGTGCGATCGTCGTCGTACCCGGGACG GGTACATTTGTCTCTTGACGAGGATGGGATGGGCAGGAAGCGCCAGCGGG TTTAAATTTATACTTAGGGGCGACTTCAGTTCTCCGTCCTCTCTGCCTTC CATCGATTCCCTGCTGCCTCATCCCGCCTTTGTAACCCGTTCTTGACGAT TTGTCCCGCCGGCGCTGTGGCATCAGATGCACATGACGGTCAACAACATC CGGCCGATCGAAGACACCAACGAGCTCACCTACCACGCCCTCGAGGTCAT CTACGTGCACCTGCTGCACACGCGGGGTCCGCTTAACGCGCCCGCCGGCG GCGCCGCTGCCGGCGGCGGCTTTGCGGTGGGTGGCGGCGGCTTCGGTATG GGAGGCGGCGGCGGCTTCCGGCAGCCGCAGTTCGGCGGGTCGCCGCAGCA GCAATCTTTCAATGGTGGCGGCATGGGGATGGGCATAGGCGGCGGTGGGG ACGGCATGATGGCGTTCACGGCCAAGCAGCAGATGGTGGTGGAGTGCTTC ACGGGCGGCGGGGGTGAGACGGGCATCAGCATCCAGACCGCAGTGCAGCA GCTGGGGCCGCGCGGCGTCACGGCTGCCGAGGTGAGGAAAGGAAAGGGGG CGGATGGGCGGCGGATCGGCGGGCGACCGGATTGTTAGGGAGGAACTTCC TGCGCTGCATCGCAGATTTTGTGTTTTTAGTCCGTTATTGACGGCCGGTG GCGGCCACCGTAAGCTGGCGAATGCACTGCGGCAGTCTTTTGGGCCTCGG GGCATGCAGTACGGAAATATTTCCTTTTACCACGGCATGCGCTCCCGGCC CTCGCTCCTCTGTCTCTCGTTCCTTTGCAGGTGCGGGAAATCGTGGGCCA GCTGGCCGGTGAGGGCCACCTCTACTCCACAACGGACGAGGAGCACTTCA AGTCCACTAATGGCTGAGAGGAAAAGCAGGGGCGCCGCATCGGATATTGG TCGGACCCCATGAACTGCAACTCCTGCCGGCCGGCGTTTTCCCTCCCTGC CATGTTTTTTGGCGCGGCCTCGGCGGCCCCGTGGCCGCACCGTTCCTGGA GCGCGCGTCCGCTTTAAAGCCATGTGACTGGAAGCTGAAAGGGGTGAGTC AGAAACAGCTCAGCAACTTCCGCGTCGCAGCTAGCTCCCTCCATCGGGGG CTGTGATTGGCGCAAAACGAAGGCGCTGTCAGGCAGGCGGGCAGCGGGCG GCACACGAGCCGGACCGCAGAGAGCGCGGGCGGCGGCGGCACGCAGCAAT GTTGAGGGAAACGGAGTCTGTTGGGACCGGTTGCCGTCAAGACGGAAAGG GCGGCGCGTGACTGGCGCCGGAGTGGGATAAAGGCGGGCATTTCTGCCCG CCAAATGTAAGTGATTTCTTTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1648:1200..4072-

>mRNA_P-wetherbeei_contig1648.3.2 ID=mRNA_P-wetherbeei_contig1648.3.2|Name=mRNA_P-wetherbeei_contig1648.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig1648:1200..4072- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTACGGCGCCCAGGGCGGGGGCTACTTTGGCGGCGGCGGAGGCGG
CTTCATCCAAGGCGCCAACGGCTCCCCGGGCTACCCGGACGGCTCGCCGG
CCGGGGGCGGCGGCGGCGGCGGCGGAGCGGGCGGGCGAGTGAACAAGGAG
AAGCAGACGATCATCCCGCTGACGATCCGGATGATTGTCAATGCCAAGCA
GGACCAGCCGGACGGGAAGTTTATGGTTGACAACTGCGAGCTGCAGCAGG
TGAAGATCGTGGGGTTCATCCGGGACGTGGTGGCCATGTCGACCAACTCG
TCGTACATCGTGGAGGACGGCACGGGGCTGCTCGACTGCCGCATGTTCCA
CGACAGCGACGAGAGCGAGCAGGAGGTTGAGCGCCGCGACGCGCTCGTGC
AGCACACCTTTGTGCGCGTCTATGGCTCCGTGCGCTTCTTTGACGGCAAG
GCGAGCGACGCATACGGGACGATGCACATGACGGTCAACAACATCCGGCC
GATCGAAGACACCAACGAGCTCACCTACCACGCCCTCGAGGTCATCTACG
TGCACCTGCTGCACACGCGGGGTCCGCTTAACGCGCCCGCCGGCGGCGCC
GCTGCCGGCGGCGGCTTTGCGGTGGGTGGCGGCGGCTTCGGTATGGGAGG
CGGCGGCGGCTTCCGGCAGCCGCAGTTCGGCGGGTCGCCGCAGCAGCAAT
CTTTCAATGGTGGCGGCATGGGGATGGGCATAGGCGGCGGTGGGGACGGC
ATGATGGCGTTCACGGCCAAGCAGCAGATGGTGGTGGAGTGCTTCACGGG
CGGCGGGGGTGAGACGGGCATCAGCATCCAGACCGCAGTGCAGCAGCTGG
GGCCGCGCGGCGTCACGGCTGCCGAGGTGCGGGAAATCGTGGGCCAGCTG
GCCGGTGAGGGCCACCTCTACTCCACAACGGACGAGGAGCACTTCAAGTC
CACTAATGGCTGA
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