mRNA_P-wetherbeei_contig16472.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16472.1.1
Unique NamemRNA_P-wetherbeei_contig16472.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: UPI0019C22193 (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019C22193)

HSP 1 Score: 119 bits (297), Expect = 1.600e-33
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATLN 180
            IQRV+A HNGKTVMDAQWSQAVSKNPFV+FRIRGAKPGDKVTVSWEDNKGE+A IE TLN
Sbjct:   45 IQRVVAAHNGKTVMDAQWSQAVSKNPFVNFRIRGAKPGDKVTVSWEDNKGERASIETTLN 104          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A7C3JNZ8_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JNZ8_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-22
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ V+ THNGKTV+DAQWSQAVS+NPF+  RI+GAK GDKV+V+W DNKG+K   E T+
Sbjct:   44 IQSVLVTHNGKTVLDAQWSQAVSRNPFLGLRIKGAKVGDKVSVTWTDNKGDKRTDEVTI 102          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A536SRP3_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SRP3_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 1.520e-22
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATLN 180
            IQ V  TH GKTV+ AQW  A+SKNPF+HFR +G KPG+KVT+SW DNKG+K   EAT++
Sbjct:   44 IQNVTVTHAGKTVLSAQWGPAISKNPFMHFRFKGGKPGEKVTISWVDNKGDKRTDEATIS 103          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: UPI0019A7EBFE (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019A7EBFE)

HSP 1 Score: 90.9 bits (224), Expect = 2.160e-22
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ + ATHNGK V+DAQWSQA+SKNPF  F+I+GAK GD VTVSW DNKGE + I+A +
Sbjct:   42 IQTIKATHNGKIVIDAQWSQAISKNPFFGFKIKGAKSGDTVTVSWVDNKGETSSIDAKI 100          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A1F3ZV70_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F3ZV70_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 4.240e-22
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ V   HNGKTV  AQWS AVS+NPF+HFR +G KPG+KVT++W DN+GEK   EAT+
Sbjct:   44 IQEVTVVHNGKTVFSAQWSTAVSRNPFLHFRFKGGKPGEKVTITWVDNRGEKRIDEATI 102          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A1F4EW53_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EW53_9PROT)

HSP 1 Score: 89.7 bits (221), Expect = 5.390e-22
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ+V  THNG+TVM AQW  AVSKNPF+HFR  G KPGD+V VSW DNKGEK   E  +
Sbjct:   40 IQQVSVTHNGRTVMSAQWGPAVSKNPFLHFRFSGGKPGDRVAVSWTDNKGEKRTDETVV 98          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A1F4JT14_9BURK (Thiosulfate oxidation carrier complex protein SoxZ n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4JT14_9BURK)

HSP 1 Score: 89.4 bits (220), Expect = 7.440e-22
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATLN 180
            IQ V ATHNGKTVM A+W  AVSKNPF+ F ++GAK GDK+ VSW+DNKGE    EAT++
Sbjct:   40 IQEVTATHNGKTVMTAEWGPAVSKNPFLQFTVKGAKVGDKIGVSWKDNKGENRADEATVS 99          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A1F4DDV9_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DDV9_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.280e-21
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ V+ THNGK V+DAQWSQAVS+NPF+  R++GAK GDK+ V+W DNKG+K   EA +
Sbjct:   44 IQNVVVTHNGKVVLDAQWSQAVSRNPFLGLRVKGAKAGDKIGVTWTDNKGDKRSDEAAV 102          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A7V8ZQE0_9BURK (Thiosulfate oxidation carrier complex protein SoxZ n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZQE0_9BURK)

HSP 1 Score: 89.0 bits (219), Expect = 1.320e-21
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            IQ + ATHNGK V+DAQWSQA+SKNPF  F+I+GAK GD V+VSW DNKG+ + I+A +
Sbjct:   46 IQHIKATHNGKVVVDAQWSQAISKNPFFGFKIKGAKAGDTVSVSWVDNKGDASSIDAKI 104          
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Match: A0A536VVJ4_9PROT (Thiosulfate oxidation carrier complex protein SoxZ n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536VVJ4_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 1.820e-21
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKGEKAGIEATL 177
            I+ V  TH GKTV+ AQW  ++SKNPF+HFR +G KPG+KVT+SW DNKG+K   EAT+
Sbjct:   44 IRNVTVTHGGKTVLSAQWGTSISKNPFMHFRFKGGKPGEKVTISWIDNKGDKRTDEATI 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16472.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C221931.600e-3390.00Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A7C3JNZ8_9PROT1.100e-2267.80Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A536SRP3_9PROT1.520e-2263.33Thiosulfate oxidation carrier complex protein SoxZ... [more]
UPI0019A7EBFE2.160e-2267.80Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A1F3ZV70_9PROT4.240e-2264.41Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A1F4EW53_9PROT5.390e-2266.10Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A1F4JT14_9BURK7.440e-2265.00Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A1F4DDV9_9PROT1.280e-2162.71Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A7V8ZQE0_9BURK1.320e-2164.41Thiosulfate oxidation carrier complex protein SoxZ... [more]
A0A536VVJ4_9PROT1.820e-2161.02Thiosulfate oxidation carrier complex protein SoxZ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16472contigP-wetherbeei_contig16472:2..184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog395495.Lcho_3781
Preferred namesoxZ
PFAMsSoxZ
Model size183
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC03151,RC03152
KEGG koko:K17227
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,map00920,map01100,map01120
KEGG ModuleM00595
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-20
EggNOG OGsCOG5501@1|root,COG5501@2|Bacteria,1N097@1224|Proteobacteria,2VU95@28216|Betaproteobacteria,1KMCW@119065|unclassified Burkholderiales
DescriptionPFAM Sulphur oxidation protein SoxZ
Cds size183
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.8894582-CDS-P-wetherbeei_contig16472:1..1841683186087.8894582-CDS-P-wetherbeei_contig16472:1..184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16472 2..184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16472.1.1prot_P-wetherbeei_contig16472.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16472 2..184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16472.1.1

>prot_P-wetherbeei_contig16472.1.1 ID=prot_P-wetherbeei_contig16472.1.1|Name=mRNA_P-wetherbeei_contig16472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
IQRVIATHNGKTVMDAQWSQAVSKNPFVHFRIRGAKPGDKVTVSWEDNKG
EKAGIEATLN*
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mRNA from alignment at P-wetherbeei_contig16472:2..184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16472.1.1 ID=mRNA_P-wetherbeei_contig16472.1.1|Name=mRNA_P-wetherbeei_contig16472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig16472:2..184+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCAACGCGTCATCGCCACCCACAATGGCAAGACAGTAATGGACGCGCA ATGGAGCCAGGCCGTGTCGAAGAATCCATTCGTGCATTTTCGGATTCGCG GGGCAAAGCCGGGCGACAAGGTCACGGTAAGTTGGGAAGACAACAAGGGC GAAAAGGCCGGCATCGAGGCAACGCTAAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16472:2..184+

>mRNA_P-wetherbeei_contig16472.1.1 ID=mRNA_P-wetherbeei_contig16472.1.1|Name=mRNA_P-wetherbeei_contig16472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig16472:2..184+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCAACGCGTCATCGCCACCCACAATGGCAAGACAGTAATGGACGCGCA
ATGGAGCCAGGCCGTGTCGAAGAATCCATTCGTGCATTTTCGGATTCGCG
GGGCAAAGCCGGGCGACAAGGTCACGGTAAGTTGGGAAGACAACAAGGGC
GAAAAGGCCGGCATCGAGGCAACGCTAAACTGA
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