mRNA_P-wetherbeei_contig16463.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16463.1.1
Unique NamemRNA_P-wetherbeei_contig16463.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: D7FNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB6_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 2.100e-67
Identity = 117/175 (66.86%), Postives = 135/175 (77.14%), Query Frame = 1
Query:    1 LRMYDSARKLPAGRSPFAEMLLADEARFRVKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAP-----------FAALLLGVINPIFVKMLPKWPNAIVLPGVAGRAP 492
            ++++ +A  L AGRSPFAEMLLADEARFR KQGLFQSIGLYSIFG  LVEHLW +WELVLTG P LV+  +VG+SSA ILGMVSLASPVYYGGDFRPHFTTFDPDY +IV  HD VS+Q+    +  G P           F +LLLGVINPIF++ L +WPNAIVLPG  GR+P
Sbjct:  906 VQIHRTASNLRAGRSPFAEMLLADEARFRAKQGLFQSIGLYSIFGKKLVEHLWLLWELVLTGGPTLVLGSSVGASSAAILGMVSLASPVYYGGDFRPHFTTFDPDYREIVAAHDKVSKQQMWGSSVLGVPAAGSAAGAGGGFPSLLLGVINPIFLRTLSRWPNAIVLPGAPGRSP 1080          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A6H5KGC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC5_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 7.410e-67
Identity = 116/175 (66.29%), Postives = 134/175 (76.57%), Query Frame = 1
Query:    1 LRMYDSARKLPAGRSPFAEMLLADEARFRVKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAP-----------FAALLLGVINPIFVKMLPKWPNAIVLPGVAGRAP 492
            ++++ +A  L  GRSPFAEMLLADEARFR KQGLFQSIGLYSIFG  LVEHLW +WELVLTG P LV+  +VG+SSA ILGMVSLASPVYYGGDFRPHFTTFDPDY +IV  HD VS+Q+    +  G P           F +LLLGVINPIF++ L +WPNAIVLPG  GR+P
Sbjct: 1087 VQIHRTASNLRGGRSPFAEMLLADEARFRAKQGLFQSIGLYSIFGKKLVEHLWLLWELVLTGGPTLVLGSSVGASSAAILGMVSLASPVYYGGDFRPHFTTFDPDYREIVAAHDKVSKQQMWGSSVLGVPAAGSAAGAGGGFPSLLLGVINPIFLRTLSRWPNAIVLPGAPGRSP 1261          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A835Z9L9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L9_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.120e-62
Identity = 110/162 (67.90%), Postives = 128/162 (79.01%), Query Frame = 1
Query:   37 GRSPFAEMLLADEARFRVKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEA-----SPTE-----NGAPFAALLLGVINPIFVKMLPKWPNAIVLPGVAGRAP 492
            GR PFAEMLLA+EA  R +QGLFQS+GLYS  G  L+EHLW MWELV+TG+PV+VV PNVGSSSAV+L MVSLASP+YYGGDFRPHFTTFDPDY DI   HD ++R+  A     SP+E     N + + +LLLGVINP+F+K L  WPNAIVLPGVAGRAP
Sbjct:  605 GRCPFAEMLLAEEASQRDRQGLFQSMGLYSACGRGLMEHLWHMWELVITGAPVMVVGPNVGSSSAVVLAMVSLASPIYYGGDFRPHFTTFDPDYRDIAVAHDRLAREAAAANSMMSPSEGNGGANESEYPSLLLGVINPLFLKSLGGWPNAIVLPGVAGRAP 766          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A7S2SJA1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SJA1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.980e-24
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   97 GLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAIVLPGV 477
            GLFQ I L+S FG  L   LW +WEL L+G PVLV+AP     S  +L +  L +P+ Y GD+RP+FT +DPD++++ + HD +  Q   S          ++LGV NP F+K L  WPN I + G+
Sbjct:  250 GLFQEIPLFSTFG-GLSVALWHIWELALSGDPVLVLAPTPDRCSQAVLAIAGLIAPIVYNGDYRPYFTIYDPDFMEVSRKHDELQGQNMPS----------VVLGVTNPYFLKTLEFWPNVISMGGI 365          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A2R5GSZ1_9STRA (Protein DENND6A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSZ1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.790e-24
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   97 GLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAIVLPGVAGRAP 492
            GLFQ I L+S FG  L   LW +WEL L G P+LV+AP     S  +L + SL +P+ Y GD+RP+FT +D D++ I + HD  +R ++  PT         +LGV NP F+K L  WPN I + G    AP
Sbjct:  360 GLFQDIPLFSTFG-GLSVALWHIWELALAGEPILVLAPTPDRCSQAVLAIASLIAPIAYNGDYRPYFTIYDSDFMQISRKHDE-TRGQDMPPT---------VLGVTNPYFLKTLEYWPNVISMGGSGHSAP 480          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A7S4UHJ3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UHJ3_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 7.420e-20
Identity = 51/136 (37.50%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   61 LLADEARFRVKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAIVL 468
            L+ D +R         S+ +Y+ F    +  LW  WEL+L G P+L+++      S  +LG+VSL SP+ +GGDFRP FT  DPD+  I  +   +S  EE + ++   P  +LL+GV NP F K L  WP+ + L
Sbjct:   40 LIVDASRTSSNSAPPLSVDIYTNF-IHFLPDLWCFWELILLGEPLLIISDFPDQCSEAVLGLVSLISPLVFGGDFRPFFTMHDPDFKRISSLD--MSTPEEGNSSD---PQRSLLIGVTNPFFRKELNTWPHHLCL 169          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A5J4XY75_9CHLO (UDENN domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XY75_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 1.470e-19
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   97 GLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAI 462
            G F  + +Y+ F   L++HLWT+WE++L   P+LV+AP+ G  S  +  +++L SP+ Y  D RP+FT  DPD+  +           E +P+    P    LLGV N  F+K LP+WPN +
Sbjct:  235 GAFHEVDIYTPFSA-LLQHLWTLWEVLLLAEPLLVLAPSPGECSTAVAALIALVSPLPYSADVRPYFTIHDPDFQAMTSP--------EPAPSSTNLP---RLLGVTNRYFLKALPQWPNTV 344          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: UPI001493A7FE (protein DENND6B isoform X2 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI001493A7FE)

HSP 1 Score: 92.4 bits (228), Expect = 9.220e-19
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   88 VKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAIVL 468
            V  GLF    L++ F   L+ HLWT+WEL++ G PVLVVAP+    S  + G+VSL +P+ Y  DFRP+FT  DPD+  +  + +             G  F  ++LGV N  F+K L   PN + +
Sbjct:  216 VPYGLFHDADLFAAF-RGLLLHLWTLWELMVVGEPVLVVAPSPAQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPDFARLNALAE-------------GEVFPPMVLGVTNLFFLKSLKSIPNVVAV 328          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: K4A715_SETIT (UDENN domain-containing protein n=20 Tax=PACMAD clade TaxID=147370 RepID=K4A715_SETIT)

HSP 1 Score: 92.4 bits (228), Expect = 9.250e-19
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   88 VKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAIVL 468
            V  GLF    L++ F   L+ HLWT+WEL++ G PVLVVAP+    S  + G+VSL +P+ Y  DFRP+FT  DPD+  +  + +             G  F  ++LGV N  F+K L   PN + +
Sbjct:  216 VPYGLFHDADLFAAF-RGLLLHLWTLWELMVVGEPVLVVAPSPAQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPDFARLNALAE-------------GEVFPPMVLGVTNLFFLKSLKSIPNVVAV 328          
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Match: A0A6G1DQQ7_9ORYZ (UDENN domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DQQ7_9ORYZ)

HSP 1 Score: 91.3 bits (225), Expect = 1.270e-18
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   76 ARFRVKQGLFQSIGLYSIFGTDLVEHLWTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTFDPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPNAI 462
            A   V  GLF    L++ F   L+ HLWT+WEL++ G P+LVVAP+    S  + G+VSL +P+ Y  DFRP+FT  DPD+  +  + +             G  F  ++LGV N  F+K L   PN +
Sbjct:  215 ANSSVPYGLFHDADLFAAF-RGLLLHLWTLWELMVVGEPILVVAPSPPQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPDFARLNALAE-------------GEVFPPMVLGVTNLFFLKSLKSIPNVV 329          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16463.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB6_ECTSI2.100e-6766.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC5_9PHAE7.410e-6766.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9L9_9STRA3.120e-6267.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SJA1_9STRA2.980e-2442.52Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GSZ1_9STRA7.790e-2443.18Protein DENND6A n=1 Tax=Hondaea fermentalgiana Tax... [more]
A0A7S4UHJ3_9EUKA7.420e-2037.50Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A5J4XY75_9CHLO1.470e-1937.70UDENN domain-containing protein n=1 Tax=Trebouxia ... [more]
UPI001493A7FE9.220e-1938.58protein DENND6B isoform X2 n=1 Tax=Setaria viridis... [more]
K4A715_SETIT9.250e-1938.58UDENN domain-containing protein n=20 Tax=PACMAD cl... [more]
A0A6G1DQQ7_9ORYZ1.270e-1837.98UDENN domain-containing protein n=1 Tax=Oryza meye... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16463contigP-wetherbeei_contig16463:129..1262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNB6
PFAMsAvl9,SPA
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K17654
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.34e-68
EggNOG OGsKOG2432@1|root,KOG2432@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size486
COG categoryJ
BRITEko00000,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.6939487-CDS-P-wetherbeei_contig16463:128..3001683186087.6939487-CDS-P-wetherbeei_contig16463:128..300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16463 129..300 -
1683186087.705304-CDS-P-wetherbeei_contig16463:481..6601683186087.705304-CDS-P-wetherbeei_contig16463:481..660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16463 482..660 -
1683186087.7166457-CDS-P-wetherbeei_contig16463:864..9191683186087.7166457-CDS-P-wetherbeei_contig16463:864..919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16463 865..919 -
1683186087.7280235-CDS-P-wetherbeei_contig16463:1176..12561683186087.7280235-CDS-P-wetherbeei_contig16463:1176..1256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16463 1177..1256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.7381642-UTR-P-wetherbeei_contig16463:1256..12621683186087.7381642-UTR-P-wetherbeei_contig16463:1256..1262Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16463 1257..1262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16463.1.1prot_P-wetherbeei_contig16463.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16463 129..1256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16463.1.1

>prot_P-wetherbeei_contig16463.1.1 ID=prot_P-wetherbeei_contig16463.1.1|Name=mRNA_P-wetherbeei_contig16463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MYDSARKLPAGRSPFAEMLLADEARFRVKQGLFQSIGLYSIFGTDLVEHL
WTMWELVLTGSPVLVVAPNVGSSSAVILGMVSLASPVYYGGDFRPHFTTF
DPDYVDIVKMHDTVSRQEEASPTENGAPFAALLLGVINPIFVKMLPKWPN
AIVLPGVAGRAP
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mRNA from alignment at P-wetherbeei_contig16463:129..1262-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16463.1.1 ID=mRNA_P-wetherbeei_contig16463.1.1|Name=mRNA_P-wetherbeei_contig16463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig16463:129..1262- (Phaeothamnion wetherbeei SAG_119_79)
CTTCGGATGTACGACAGCGCACGGAAACTGCCGGCGGGGCGGTCGCCCTT CGCCGAGATGCTGCTGGCCGACGAGGCCCGCTTCAGGTGTGTCGCGTCGG CGAGAGAGTAGCGGCGTGGTGTTTCTGTGGAGGGTTCGGCAGCGGCTTGC CGCTCGATAGCAAAATTTCATGTTCAAGGTGGTCCAAAGTGTTATCACCT TCCAACCTTGTGGGCATCTCGTTCTTCATGGCGATTTTTCGGTCCTGGTA CGGCTTGGCGAGTACAGCTAACGTGTTACTAGACCAGAAGCTGACCTTGT GACGCATCGCTTGCACTGGTACTTTTGTCCTTGCTGTGTGCAGGGTGAAA CAGGGGCTGTTTCAGAGCATCGGACTTTACAGCATCTTCGGCACCGACGT AAGTGTGGTACTGTATCGTTGGCACTTTTCCTGGAATTATCATCGACTGA ACAGTGAGCGTTTTGAAAACCGAAAGCTGTTTGGGAATGCTGCCGAATGA GGAGGCCCACCTCAACCTTTGGTTATTGTTTCTTCATGCGAACCTCCTGC TTTCCTCTTGTGACTGCATCGCGCTTCCCTCTTGTAACCGCACCGCATCC AGCTGGTGGAGCACCTGTGGACGATGTGGGAGCTGGTGCTGACGGGCAGC CCCGTGCTGGTAGTGGCGCCAAACGTGGGCAGCAGCAGCGCCGTCATCCT CGGAATGGTCTCGCTCGCCTCCCCCGTCTACTACGGCGGCGACTTCCGCC CGCACTTCACCACCTTCGATCCGGACTACGTGTGAGCGACAGAGGCCTTG CTATTGCCGTTTCGTTATACAGCTATCTGGTTACCTTTTTATTTCAACCT CCGCCGGAAGCTTCGATGAGGGAAATACCCTACTCTTGTATCCGCCTTTC TGACCAGCGTATTGCTTTCCTTTATTTGTTTCTCGCTTTTGTTCTTTATT GCTTCGTGGCAGCGACATTGTCAAGATGCACGACACGGTGAGCCGGCAGG AGGAGGCTTCGCCGACGGAGAACGGGGCGCCGTTCGCTGCCCTCCTCCTC GGCGTCATCAACCCCATCTTTGTCAAGATGCTGCCCAAGTGGCCGAACGC GATCGTGCTGCCGGGGGTGGCAGGCCGGGCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16463:129..1262-

>mRNA_P-wetherbeei_contig16463.1.1 ID=mRNA_P-wetherbeei_contig16463.1.1|Name=mRNA_P-wetherbeei_contig16463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig16463:129..1262- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGACAGCGCACGGAAACTGCCGGCGGGGCGGTCGCCCTTCGCCGA
GATGCTGCTGGCCGACGAGGCCCGCTTCAGGGTGAAACAGGGGCTGTTTC
AGAGCATCGGACTTTACAGCATCTTCGGCACCGACCTGGTGGAGCACCTG
TGGACGATGTGGGAGCTGGTGCTGACGGGCAGCCCCGTGCTGGTAGTGGC
GCCAAACGTGGGCAGCAGCAGCGCCGTCATCCTCGGAATGGTCTCGCTCG
CCTCCCCCGTCTACTACGGCGGCGACTTCCGCCCGCACTTCACCACCTTC
GATCCGGACTACGTCGACATTGTCAAGATGCACGACACGGTGAGCCGGCA
GGAGGAGGCTTCGCCGACGGAGAACGGGGCGCCGTTCGCTGCCCTCCTCC
TCGGCGTCATCAACCCCATCTTTGTCAAGATGCTGCCCAAGTGGCCGAAC
GCGATCGTGCTGCCGGGGGTGGCAGGCCGGGCGCCC
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