mRNA_P-wetherbeei_contig1646.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1646.1.1
Unique NamemRNA_P-wetherbeei_contig1646.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A6H5KR51_9PHAE (Transmembrane protein 267 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR51_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 9.700e-29
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   25 AVTKQLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGS----TRAGVMVFSAVLSHQLRDATRRGLWLWP--GRSTPPLPYPLYLAALAILPLAVGAALR 360
            AV  + + A  +GSALD+DHFLAAGSVRLS A++L  RP+GHCVA    AA A+ +     RA V VFSA  +HQLRD+TRRGLWL+P  G  TPP+ YP+YL A A+LPL +   LR
Sbjct:  182 AVALEALFAACVGSALDLDHFLAAGSVRLSRATALAGRPWGHCVAALIVAAFAVAALTRNARAAVCVFSAGATHQLRDSTRRGLWLYPPRGAKTPPVSYPIYLLAQALLPLVMAMCLR 299          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A7S2W8E3_9STRA (Transmembrane protein 267 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8E3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.070e-26
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   73 DVDHFLAAGSVRLSDASSLQHRPFGHCVAFA----AAAALALGSTRAGVMVFSAVLSHQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILPLAVG 348
            D+DHFLAAGS+RL DA+ L HRPFGH +  A    A AAL     R GV+V +A+LSHQLRDA RRG+WL+P  ST PLP+P+YL  L  LPL V 
Sbjct:    1 DLDHFLAAGSLRLQDATRLSHRPFGHALLAAGCLGALAALLTRQRRKGVLVATAILSHQLRDALRRGMWLFPLGSTAPLPFPVYLVCLFSLPLLVA 96          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: D7FYK9_ECTSI (Transmembrane protein 267 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.640e-22
Identity = 58/102 (56.86%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   10 AARPRAVTK-QLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGS----TRAGVMVFSAVLSHQLRDATRRGLWLWP--GRSTPP 294
            A RP A    +++ A  +GSALD+DHFLAAGSVRLS A++L  RP+GHCVA    AA A+ +     RA V VFSA  +HQLRD+TRRGLWL+P  G  TPP
Sbjct:   51 ARRPSAAAALEVLFAACVGSALDLDHFLAAGSVRLSRATALAGRPWGHCVAALIVAAFAVAALTRNARAAVCVFSAGATHQLRDSTRRGLWLYPPRGPKTPP 152          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A024UG16_9STRA (Transmembrane protein 267 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG16_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.590e-21
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   37 QLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAAL-------ALGSTRAGVMVFSAVLSHQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILPLAVGAALRRTSK 372
            + IAA  +GS LD DHF+AA +  L  A+SL  RP+GH V F  A AL       A  + R   ++F  +LSHQLRD+ RRGLW  P  STPPLPY +YL    ++PL VG  LR  S+
Sbjct:   17 EAIAAVAVGSLLDADHFVAARAFSLRAATSLNDRPWGHSVTFIIAVALIAWKALPAPFNLRGAALLFVCLLSHQLRDSFRRGLWFAPLGSTPPLPYWVYLVLEVLVPLGVGTWLRCHSR 135          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A482SJG6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJG6_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 1.880e-20
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   34 KQLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALAL----GSTRAGVMVFSAVLSHQLRDATRRGLWLWP-GRSTPPLPY----PLYL 315
            K+L  A     ALDVDHF+AAGS  L DA++L HRPFGH +AF    +L       ++R   ++F A+LSH LRD+ +RGLWLWP   STPP+P+    P+YL
Sbjct:   80 KELALAGFTSCALDVDHFIAAGSASLQDATNLPHRPFGHALAFVPCVSLLYYAVSRNSRTAKLLFVALLSHHLRDSMKRGLWLWPMDYSTPPIPFYYVFPMYL 182          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A024GKZ5_9STRA (Transmembrane protein 267 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GKZ5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.860e-20
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   67 ALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGSTRAG----------VMVFSAVLSHQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILPLAVGAA 354
            A+D+DHF+AAGS R+  A++L+ RPF H  AF A   + +    AG           +++ A+ SHQLRDA R G+WLWP  STPP+PY LYL    +LPL++  A
Sbjct:   78 AMDLDHFIAAGSFRIDAATNLKKRPFAHAFAFIALMCVFVWIQSAGNTKVVRFQRVALLWIALSSHQLRDAVRHGVWLWPFGSTPPIPYALYLFIQVLLPLSIARA 183          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: UPI00096AEC5F (transmembrane protein 267 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096AEC5F)

HSP 1 Score: 88.6 bits (218), Expect = 2.250e-19
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   34 KQLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGSTR----------AGVMVFSAVLSHQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILPLAV 345
            K++   TLL S +D+DHF+AA S+ L DA++LQ RPF HC  +  A  L + ++           AG+++ +A  SH  RDATRRG WL P  STPP+PY +Y+     +P  +
Sbjct:   67 KEIALCTLLSSCIDLDHFIAAHSIHLKDATNLQSRPFLHCTTYPLAFVLFVLTSSVYCKSGLLKTAGLLLLAAFASHHTRDATRRGFWLHPFGSTPPIPYYVYVGITCFIPYVI 180          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A1V9ZFX0_9STRA (Transmembrane protein 267 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFX0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.290e-19
Identity = 55/106 (51.89%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   43 IAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGST-------RAGVMVFSAVLSHQLRDATRRGLWLWPG-RSTPPLPYPLYLAALAILP 336
            + A L+GS LD+DHF+AA       A+SL  RP GH VAF AA AL +          RA  +V   +LSHQLRDA RRGLW+ PG  STPPLPY +YLA    LP
Sbjct:  122 VIALLIGSLLDLDHFVAAAGWTFQAATSLSERPLGHAVAFIAAIALVVWCACPRSRRIRAVALVLVCLLSHQLRDAFRRGLWIAPGVGSTPPLPYAMYLALELSLP 227          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: UPI0014255E17 (transmembrane protein 267-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255E17)

HSP 1 Score: 88.2 bits (217), Expect = 5.930e-19
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   34 KQLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAAL-------ALGSTRAGVMVFSAVLS---HQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILPLAVG 348
            +Q+I A +L S +DVDHFLAA S+ L DA+SLQ RP  H        A+       A G  R     +   LS   H +RDATRRGLWLWP  STPP+PY +Y+    +LP  + 
Sbjct:   90 RQIILAGILASCMDVDHFLAARSIHLKDATSLQQRPLFHMTTLIPVIAIISEIIICASGLHRLHYFPYLFTLSWFSHHIRDATRRGLWLWPFGSTPPVPYGMYIGLTLVLPFLIA 204          
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Match: A0A2P8ZFL3_BLAGE (Transmembrane protein 267 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZFL3_BLAGE)

HSP 1 Score: 87.4 bits (215), Expect = 6.140e-19
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   55 LLGSALDVDHFLAAGSVRLSDASSLQHRPFGHCVAFAAAAALALGST----------RAGVMVFSAVLSHQLRDATRRGLWLWPGRSTPPLPYPLYLAALAILP 336
            LLGSA+D+DHF AA S +L DA  L  RPF HC +   A  +A+             R   ++ +A+LSH +RDATRRG W+WP  STPP+PY  YL A   LP
Sbjct:   72 LLGSAIDLDHFAAAKSFKLQDARMLTSRPFMHCTSLPLAVFIAVSLPAYLYHWTSVQRLLWIMLAAILSHHIRDATRRGFWMWPFGSTPPVPYVYYLLANMSLP 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1646.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR51_9PHAE9.700e-2956.78Transmembrane protein 267 n=1 Tax=Ectocarpus sp. C... [more]
A0A7S2W8E3_9STRA1.070e-2659.38Transmembrane protein 267 n=1 Tax=Rhizochromulina ... [more]
D7FYK9_ECTSI4.640e-2256.86Transmembrane protein 267 n=1 Tax=Ectocarpus silic... [more]
A0A024UG16_9STRA2.590e-2147.90Transmembrane protein 267 n=1 Tax=Aphanomyces inva... [more]
A0A482SJG6_9ARCH1.880e-2049.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A024GKZ5_9STRA7.860e-2045.28Transmembrane protein 267 n=2 Tax=Albugo candida T... [more]
UPI00096AEC5F2.250e-1941.23transmembrane protein 267 n=1 Tax=Aethina tumida T... [more]
A0A1V9ZFX0_9STRA2.290e-1951.89Transmembrane protein 267 n=1 Tax=Achlya hypogyna ... [more]
UPI0014255E175.930e-1944.35transmembrane protein 267-like n=1 Tax=Anneissia j... [more]
A0A2P8ZFL3_BLAGE6.140e-1947.12Transmembrane protein 267 n=1 Tax=Blattella german... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1646contigP-wetherbeei_contig1646:3165..4020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008866583.1
Preferred nameC5orf28
PFAMsYdjM
Model size375
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue4.25e-22
EggNOG OGs2CHIK@1|root,2S7YE@2759|Eukaryota
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.6627781-CDS-P-wetherbeei_contig1646:3164..33261683186087.6627781-CDS-P-wetherbeei_contig1646:3164..3326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1646 3165..3326 +
1683186087.6710844-CDS-P-wetherbeei_contig1646:3807..40201683186087.6710844-CDS-P-wetherbeei_contig1646:3807..4020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1646 3808..4020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1646.1.1prot_P-wetherbeei_contig1646.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1646 3165..4020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1646.1.1

>prot_P-wetherbeei_contig1646.1.1 ID=prot_P-wetherbeei_contig1646.1.1|Name=mRNA_P-wetherbeei_contig1646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
RSDAARPRAVTKQLIAATLLGSALDVDHFLAAGSVRLSDASSLQHRPFGH
CVAFAAAAALALGSTRAGVMVFSAVLSHQLRDATRRGLWLWPGRSTPPLP
YPLYLAALAILPLAVGAALRRTSKR
back to top

mRNA from alignment at P-wetherbeei_contig1646:3165..4020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1646.1.1 ID=mRNA_P-wetherbeei_contig1646.1.1|Name=mRNA_P-wetherbeei_contig1646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=856bp|location=Sequence derived from alignment at P-wetherbeei_contig1646:3165..4020+ (Phaeothamnion wetherbeei SAG_119_79)
CGATCCGACGCTGCACGTCCAAGGGCCGTGACAAAGCAGCTCATCGCCGC CACATTATTGGGGAGCGCGCTGGACGTCGACCACTTCCTGGCGGCCGGCT CCGTCCGCTTGTCGGACGCGAGCAGCCTGCAACATCGGCCGTTTGGGCAT TGCGTCGCCTTTGTCATCGCTGCGGTAAGTCCTTTATCTGAGTAGCTCGG AGCGGACAGGTTTTAGATACCCCGTTGCCGGTGGGCAAGATAAATTTCAA CCTGCTGCAAAGTGCTGTTCAGCTTCGAAATACCTAGTCTGAAATGTTTG GAGTGGAGTGGTTCTCTGACCTTTTCTAGAAGCATTTCTGGTTTTACAAA CCAGAGCTCGGTCGGCAGGGGTTCACTTTCGAAGAGAGGATGCTGATCCG TTCGTACGGTGGCAAAGTGGGATGCTATAGGTGGAGGTGGTGTGAAATTG GAATGTGTTTCCCATGGATGCCTCCTTTTCATGGCTGAGAACTGGAAGAC TTGAATATGTGTTCTGCTTTTAAACTGCACCTCCGGCTGGCAAGCTTCCT TCTTCCTTTGCCCCGCCCACTGTCCTTCTCTTCCTGACGTCTGACCGCAT GTTTCCCACCAAACAAACTGCAATCGCTCTTCTTTCGTTGCAGGCGGCCG CCGCCGCGCTCGCACTGGGCAGCACCCGGGCCGGCGTGATGGTTTTCTCG GCGGTGCTCTCGCACCAGCTGCGAGACGCCACGCGCCGCGGCCTGTGGCT GTGGCCTGGCCGTTCCACGCCCCCGCTGCCCTACCCGCTCTACCTGGCGG CGCTGGCGATTCTCCCACTCGCCGTGGGAGCGGCGCTGCGCCGGACGAGC AAACGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1646:3165..4020+

>mRNA_P-wetherbeei_contig1646.1.1 ID=mRNA_P-wetherbeei_contig1646.1.1|Name=mRNA_P-wetherbeei_contig1646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig1646:3165..4020+ (Phaeothamnion wetherbeei SAG_119_79)
CGATCCGACGCTGCACGTCCAAGGGCCGTGACAAAGCAGCTCATCGCCGC
CACATTATTGGGGAGCGCGCTGGACGTCGACCACTTCCTGGCGGCCGGCT
CCGTCCGCTTGTCGGACGCGAGCAGCCTGCAACATCGGCCGTTTGGGCAT
TGCGTCGCCTTTGCGGCCGCCGCCGCGCTCGCACTGGGCAGCACCCGGGC
CGGCGTGATGGTTTTCTCGGCGGTGCTCTCGCACCAGCTGCGAGACGCCA
CGCGCCGCGGCCTGTGGCTGTGGCCTGGCCGTTCCACGCCCCCGCTGCCC
TACCCGCTCTACCTGGCGGCGCTGGCGATTCTCCCACTCGCCGTGGGAGC
GGCGCTGCGCCGGACGAGCAAACGG
back to top