mRNA_P-wetherbeei_contig16459.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006A6F885 (uncharacterized protein LOC106316991 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6F885) HSP 1 Score: 82.0 bits (201), Expect = 8.970e-16 Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 7 VDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILND-NKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKAN 312
+D TF+K G LL +GHD N + Y +A+A+V E D++ WF + +K + +L D N+ VI SDR KGL SA+++ELP A H C H N+K N
Sbjct: 98 LDGTFLKR-AVKGVLLTAVGHDTNNQIYPIAWAVVQSETTDSWLWFIKKIKH----DLVLQDWNRFVIISDRSKGLKSAMESELPNAEHRKCVKHIAENVKKN 195
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0LT38_RAPSA (uncharacterized protein LOC108834178 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LT38_RAPSA) HSP 1 Score: 81.6 bits (200), Expect = 1.320e-15 Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 7 VDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILND-NKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLK 306
+D TF+K G LL +GHD N + Y +A+A+V E D++ WF + +K + +L D N+ VI SDR KGL SA+++ELP A H C H + N+K
Sbjct: 227 LDGTFLKR-AVKGVLLTAVGHDANNQIYPIAWAVVQSETTDSWLWFIKKIKD----DLVLQDGNRFVIISDRSKGLKSAMESELPNAEHRKCVKHIVENVK 322
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0LSF2_RAPSA (uncharacterized protein LOC108834338 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LSF2_RAPSA) HSP 1 Score: 81.6 bits (200), Expect = 1.330e-15 Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKANPRVPN-LGPNV-KLAWDMQK 366
G+D TF+K G LL +GHDGN + + A+A+V E+ D + WF + +K S+ + + V+ SD KGL SA+Q+ELP A H C H + NLK + + L P V LAW K
Sbjct: 363 GLDGTFLKTE-VKGILLTAVGHDGNNQIFPFAWAVVQAESTDTWLWFIKRLKYDLSLG---DGSNYVLLSDSSKGLISAIQSELPNAEHRRCVKHIVENLKKKHKNKSFLKPRVWNLAWSYNK 481
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006AB0E48 (uncharacterized protein LOC106359127 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB0E48) HSP 1 Score: 81.6 bits (200), Expect = 1.340e-15 Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKANPRVPNLGPNV--KLAW 354
G+D TF+K G LL IGHDGN + Y A+ALV E D + WF + +K + + K V+ SD KGL SA+++ELP A H C H + NLK + +L V LAW
Sbjct: 355 GLDGTFLKQE-VKGILLTAIGHDGNNQIYPFAWALVQGETADTWLWFIKQLKRDLKLG---DGEKFVLLSDSSKGLISAIESELPKAEHRRCVKHIVENLKKKHKKKDLLKLVVWNLAW 469
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0NGL4_RAPSA (uncharacterized protein LOC108853986 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NGL4_RAPSA) HSP 1 Score: 81.3 bits (199), Expect = 1.830e-15 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLK 306
G+D TF+K G LL +GHDGN + Y +A+A+V EN D + WF + +K ++ + K V+ SD KGL SA++ ELP A H C H + NLK
Sbjct: 354 GLDGTFLK-VATKGILLTAVGHDGNNQIYPIAWAVVQGENSDTWLWFIKRLKHDLNLG---DGRKFVLLSDSSKGLISAIEEELPQAEHRRCVKHIVENLK 450
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0C78 (uncharacterized protein LOC112083091 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0C78) HSP 1 Score: 80.5 bits (197), Expect = 3.360e-15 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNL-GPNVKLAW 354
GVD F+K G+L + G D + R Y +A+A+V KEN +N+ WFF+ +KA + + + V+ SDR KG +AV+ ELP H C H NLKA N + P L G LAW
Sbjct: 277 GVDGCFLKTV-QKGELFIANGRDADNRIYPIAWAVVQKENTNNWSWFFQKIKADLELG---DGDGYVLVSDRQKGFLAAVKDELPKIEHRMCVRHIYMNLKARNAKKPELKGLIWNLAW 391
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0861 (uncharacterized protein LOC112086498 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0861) HSP 1 Score: 79.3 bits (194), Expect = 8.560e-15 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNLGPNV-KLAW 354
GVD F+K+ G+L + G D + R Y +A+A+V KEN +N+ WFFR +K + + + ++ SDR KGL SAV+ ELP H C H N+K+ + ++P L + LAW
Sbjct: 275 GVDGCFLKSV-QKGELFVANGRDADNRIYPIAWAVVQKENTNNWAWFFRKIKVDLGLG---DGDGYILVSDRQKGLLSAVKEELPLIEHRMCVRHIYMNVKSRHGKMPELKTMIWHLAW 389
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006A74DCB (uncharacterized protein LOC106323209 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74DCB) HSP 1 Score: 77.8 bits (190), Expect = 2.300e-14 Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKT-VIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNLGPNV-KLAWDMQK 366
G+D F+K+ GQ+L+ +G D + Y VA+ +V EN DN+ WF R VK + LND + ++ SDR KGL SAVQ ELP H C H NLK + ++ P + +LAW K
Sbjct: 275 GLDGCFVKHK-IKGQVLVALGRDADNAIYPVAWGVVQVENTDNWLWFVRMVKK----DLGLNDGEGFILISDRQKGLISAVQQELPKIEHRMCVRHIYGNLKKKHGSKSDMKPYIWRLAWSYNK 393
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0EB7 (uncharacterized protein LOC112087606 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0EB7) HSP 1 Score: 76.6 bits (187), Expect = 7.520e-14 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNL 330
GVD F+K+ G+L + +G D + Y +A+A+V KEN DN++WFF +KA +E + + V+ SDR KGL + V LP H C H N+K+ + ++P L
Sbjct: 276 GVDGCFLKSV-QKGELFVAMGRDADNAIYPIAWAVVQKENTDNWQWFFTKIKADLGLE---DGDGYVLVSDRQKGLINVVMQVLPKIEHRMCVRHIYMNVKSRHSKMPEL 381
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006AA82C6 (uncharacterized protein LOC106359028 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA82C6) HSP 1 Score: 76.3 bits (186), Expect = 9.820e-14 Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKAN 312
GVD F+K+ GQLL+ +G D + Y +A+ V EN +N+ WF R +K + L ++ SDR KGL SAVQ ELP H C H NLK N
Sbjct: 88 GVDGCFLKHK-VKGQLLVALGRDADNAIYPIAWGAVQVENTENWLWFVRKIKHDLGLNQGLG---YILVSDRQKGLISAVQTELPQIEHRMCVRHIYGNLKKN 186 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16459.1.1 >prot_P-wetherbeei_contig16459.1.1 ID=prot_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp MKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESback to top mRNA from alignment at P-wetherbeei_contig16459:512..877- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16459.1.1 ID=mRNA_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig16459:512..877- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16459:512..877- >mRNA_P-wetherbeei_contig16459.1.1 ID=mRNA_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16459:512..877- (Phaeothamnion wetherbeei SAG_119_79)back to top |