mRNA_P-wetherbeei_contig1645.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1645.1.1
Unique NamemRNA_P-wetherbeei_contig1645.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1645.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1645contigP-wetherbeei_contig1645:2658..4653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5786.XP_003285401.1
Model size1996
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-05
EggNOG OGs29BJA@1|root,2RINF@2759|Eukaryota,3XIDQ@554915|Amoebozoa
DescriptionZinc finger, C3HC4 type (RING finger)
Cds size1395
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.4922614-UTR-P-wetherbeei_contig1645:2657..29781683186087.4922614-UTR-P-wetherbeei_contig1645:2657..2978Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1645 2658..2978 +
1683186087.5093718-UTR-P-wetherbeei_contig1645:4373..46531683186087.5093718-UTR-P-wetherbeei_contig1645:4373..4653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1645 4374..4653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.5013838-CDS-P-wetherbeei_contig1645:2978..43731683186087.5013838-CDS-P-wetherbeei_contig1645:2978..4373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1645 2979..4373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1645.1.1prot_P-wetherbeei_contig1645.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1645 2979..4373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1645.1.1

>prot_P-wetherbeei_contig1645.1.1 ID=prot_P-wetherbeei_contig1645.1.1|Name=mRNA_P-wetherbeei_contig1645.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MSFVPPHCSTRAKYNMLVAQRHGKQGGAGVAGGTPDSNSDHGPTARSSGA
GSSEDSAAAAGSGGGGGRCSRGNARTAEKRDCANNVGRVSGAPGAIQPTK
PGSSHDGSGQEILVWRKRPSDAAMAAKSDPGFPSRVESKAGSPPAASAKT
AVAPAGAAKAAMGKAPAVAAASAGGCGAKPVSPAEATSEADEKGGGSSSH
ISKRAKRMLADVVERTGGGGSSGGAGKPAGSRPDGLPLPPLPPPLPLPGA
ASPPRRGLKRSSSRTAPESGSGQRGNGSGIGGSGGGGGAGSAAALRLRAD
DGSNGGNSAGATVDLGFGDDDDEDDDSGGRNHSAPPNGLPPMSQASARLL
ERATSGIARPIPTRRGALPPGMTDRSDQVVCGICQETADRPHSAACNHVC
CRECWMQWLRRPAEGRSGGAGGGVGCVGSGGIDGGGDGRPCPMCRAPVHA
SALVRLVFRPAESR*
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mRNA from alignment at P-wetherbeei_contig1645:2658..4653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1645.1.1 ID=mRNA_P-wetherbeei_contig1645.1.1|Name=mRNA_P-wetherbeei_contig1645.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1996bp|location=Sequence derived from alignment at P-wetherbeei_contig1645:2658..4653+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTTGCCGTCGCCATGATTTCGCTGCTGGAGAGGTCGCCGCCGGCGCTG
ATGCTGGTCGACCGCTTCGAGCCCCTCATACCGAGACAGTGAGTCAAAGT
TTGTCACAGTGGGTACTCTGCATCCAGGCTTATCTAAGGTGTGTCTGCTT
GATCGTTTTCCATCAAGACGAGCCACAATTAGACCACTTTAGATGAAAAT
GAAGAAGAGAAACTTTTTCTGATGTTCTCCGCGCGACGTGAGAGGTTGAA
ACAGGAAAGCTGACTCCTGCAGCAGCTTGTATCGTACCGCTAAAAGCGTA
TCCCCCGATGGCGCAGTGCGAATGTCATTTGTTCCCCCTCATTGCAGCAC
CCGCGCGAAGTACAATATGCTGGTGGCTCAACGCCATGGCAAGCAAGGAG
GGGCGGGTGTTGCCGGAGGCACTCCGGACAGCAACAGCGACCATGGCCCT
ACCGCAAGAAGTAGTGGGGCGGGGAGCAGCGAGGACAGCGCCGCCGCCGC
CGGCAGCGGCGGTGGCGGCGGACGCTGCAGCAGGGGCAACGCCAGAACAG
CAGAGAAGCGCGACTGCGCTAACAATGTCGGCAGGGTTTCTGGGGCTCCA
GGCGCCATTCAGCCCACCAAACCTGGCAGCAGCCATGACGGCAGCGGTCA
GGAGATCCTCGTGTGGCGGAAGCGACCCTCGGACGCCGCCATGGCGGCGA
AGTCCGATCCGGGTTTCCCGAGTCGCGTCGAATCAAAAGCGGGCAGTCCG
CCGGCCGCCTCTGCAAAAACGGCAGTGGCGCCAGCTGGTGCGGCAAAGGC
GGCGATGGGGAAGGCACCGGCGGTAGCAGCGGCGTCAGCGGGCGGGTGCG
GCGCCAAGCCCGTCTCGCCTGCAGAAGCAACATCGGAGGCCGACGAAAAG
GGGGGGGGGAGCTCGTCGCACATCAGCAAGCGGGCGAAGCGCATGCTGGC
GGATGTTGTAGAAAGAACAGGTGGCGGCGGCAGCAGCGGCGGTGCCGGCA
AGCCGGCGGGATCAAGGCCAGACGGGCTGCCGCTGCCGCCGCTACCTCCG
CCACTGCCGCTGCCTGGCGCCGCATCACCGCCGCGAAGGGGCCTCAAGCG
GTCGTCCTCTCGCACAGCGCCTGAGAGCGGCAGCGGTCAGAGGGGCAATG
GCAGCGGCATTGGCGGCAGCGGCGGCGGTGGTGGTGCCGGCAGCGCCGCC
GCGCTGCGCTTGAGAGCCGACGATGGCAGCAACGGCGGCAACAGCGCCGG
CGCAACTGTCGACCTCGGCTTTGGCGATGACGATGACGAAGACGACGATA
GCGGCGGCAGGAACCACAGTGCTCCGCCGAACGGGCTGCCGCCGATGTCG
CAAGCCTCCGCCCGTCTCCTGGAACGCGCTACGAGCGGCATCGCCCGGCC
GATCCCGACGCGCCGCGGCGCGCTGCCGCCCGGCATGACGGACCGGAGCG
ACCAAGTGGTGTGTGGCATCTGTCAGGAGACGGCGGACCGCCCACACTCG
GCCGCGTGCAACCACGTCTGCTGCCGAGAGTGCTGGATGCAGTGGCTCCG
GCGGCCGGCAGAGGGGCGCAGTGGCGGCGCTGGCGGGGGCGTCGGCTGCG
TCGGTAGTGGAGGCATCGATGGTGGAGGGGATGGCAGGCCGTGCCCAATG
TGTCGCGCGCCGGTGCACGCGTCGGCGCTGGTCCGGCTGGTCTTTCGGCC
GGCGGAATCGAGGTAGAAAAAGGGTAGTAGGCGATGAGAAAAGGAGCTAT
AGAATCAAATGTCGCCACAAGAGAAGTCTCATTGCAGGGACTGGGTCGGC
AGTGCAGCCTTGCTTGGCACTGCTGCAGCTATATGACGCGGCGGGCAGCG
GCGGGCGGAGTCGTCGCCGCAGGTGAAGGAGAAACGTGACGTTTTCCGAA
TGGCTGACTGTAGCTGTCTTTCCTCTCGGTTTCAATCACAATTAACAACG
ATAATAATGGCTCCAAGAAGGAAGATTCCTGCACCTCAAACTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1645:2658..4653+

>mRNA_P-wetherbeei_contig1645.1.1 ID=mRNA_P-wetherbeei_contig1645.1.1|Name=mRNA_P-wetherbeei_contig1645.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig1645:2658..4653+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCATTTGTTCCCCCTCATTGCAGCACCCGCGCGAAGTACAATATGCT
GGTGGCTCAACGCCATGGCAAGCAAGGAGGGGCGGGTGTTGCCGGAGGCA
CTCCGGACAGCAACAGCGACCATGGCCCTACCGCAAGAAGTAGTGGGGCG
GGGAGCAGCGAGGACAGCGCCGCCGCCGCCGGCAGCGGCGGTGGCGGCGG
ACGCTGCAGCAGGGGCAACGCCAGAACAGCAGAGAAGCGCGACTGCGCTA
ACAATGTCGGCAGGGTTTCTGGGGCTCCAGGCGCCATTCAGCCCACCAAA
CCTGGCAGCAGCCATGACGGCAGCGGTCAGGAGATCCTCGTGTGGCGGAA
GCGACCCTCGGACGCCGCCATGGCGGCGAAGTCCGATCCGGGTTTCCCGA
GTCGCGTCGAATCAAAAGCGGGCAGTCCGCCGGCCGCCTCTGCAAAAACG
GCAGTGGCGCCAGCTGGTGCGGCAAAGGCGGCGATGGGGAAGGCACCGGC
GGTAGCAGCGGCGTCAGCGGGCGGGTGCGGCGCCAAGCCCGTCTCGCCTG
CAGAAGCAACATCGGAGGCCGACGAAAAGGGGGGGGGGAGCTCGTCGCAC
ATCAGCAAGCGGGCGAAGCGCATGCTGGCGGATGTTGTAGAAAGAACAGG
TGGCGGCGGCAGCAGCGGCGGTGCCGGCAAGCCGGCGGGATCAAGGCCAG
ACGGGCTGCCGCTGCCGCCGCTACCTCCGCCACTGCCGCTGCCTGGCGCC
GCATCACCGCCGCGAAGGGGCCTCAAGCGGTCGTCCTCTCGCACAGCGCC
TGAGAGCGGCAGCGGTCAGAGGGGCAATGGCAGCGGCATTGGCGGCAGCG
GCGGCGGTGGTGGTGCCGGCAGCGCCGCCGCGCTGCGCTTGAGAGCCGAC
GATGGCAGCAACGGCGGCAACAGCGCCGGCGCAACTGTCGACCTCGGCTT
TGGCGATGACGATGACGAAGACGACGATAGCGGCGGCAGGAACCACAGTG
CTCCGCCGAACGGGCTGCCGCCGATGTCGCAAGCCTCCGCCCGTCTCCTG
GAACGCGCTACGAGCGGCATCGCCCGGCCGATCCCGACGCGCCGCGGCGC
GCTGCCGCCCGGCATGACGGACCGGAGCGACCAAGTGGTGTGTGGCATCT
GTCAGGAGACGGCGGACCGCCCACACTCGGCCGCGTGCAACCACGTCTGC
TGCCGAGAGTGCTGGATGCAGTGGCTCCGGCGGCCGGCAGAGGGGCGCAG
TGGCGGCGCTGGCGGGGGCGTCGGCTGCGTCGGTAGTGGAGGCATCGATG
GTGGAGGGGATGGCAGGCCGTGCCCAATGTGTCGCGCGCCGGTGCACGCG
TCGGCGCTGGTCCGGCTGGTCTTTCGGCCGGCGGAATCGAGGTAG
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