mRNA_P-wetherbeei_contig1644.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1644.3.1
Unique NamemRNA_P-wetherbeei_contig1644.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: M9M608_PSEA3 (Mis18 domain-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=M9M608_PSEA3)

HSP 1 Score: 78.6 bits (192), Expect = 3.210e-14
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   58 DHNDEISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRCELLSEVDDPP 441
            D  + ++ PLVF C  C  +LGD++AFV++D     V L      VS    F      G+++   F  L       +  G  AT+GRTY +TPRHLD +RD    D DA+ +Y LG    L ++++PP
Sbjct:  167 DDAEPVAEPLVFQCRQCFRLLGDSFAFVATDTELGYVVLSDVSDVVSQDTTFQTSTQPGKDMGATFALL-------RCGGCKATVGRTYRTTPRHLDDLRDCASLDVDAVTTYRLGSNATL-QLEEPP 286          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A8K1CW57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW57_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 5.460e-12
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   70 EISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRG-TPCRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRCEL 417
            E++AP+VF C  CRS+ GD+++FVSS+A    VTL   T   V+P+ L       G ++   F  L   +           +GR Y++TP +LDA+R ++ F T  I SY+LG  +L
Sbjct:  129 EVTAPVVFQCGTCRSIFGDSYSFVSSNAELLLVTLNAVTNVAVAPEALTAK---DGPDIGSAFQELLCKQ-------CQTVLGRKYLTTPNNLDAIRGLYSFSTTCIASYQLGYPQL 235          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: UPI000A2A5E8B (protein Mis18-alpha n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5E8B)

HSP 1 Score: 70.1 bits (170), Expect = 8.190e-12
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   58 DHNDEI----SAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGFVHI----------KGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELG 405
            D N+E     + PLVF CVGCR+++GD+ ++V +D   ++V+L      V+P     FVH+          +GE+L   F  L       + A   + IGR Y +TP+ LD +RDM+  D  +I SY+LG
Sbjct:    9 DRNEEDDPLDTIPLVFHCVGCRTIIGDSLSWVCADQNLRTVSLSA----VTP-----FVHVATEDGMEISAEGEDLGSTFVVL-------KCATCQSQIGRIYKTTPKQLDMIRDMYTLDCSSIKSYKLG 122          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A3P8ZUE9_ESOLU (MIS18 kinetochore protein A n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZUE9_ESOLU)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-11
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   61 HNDEISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGF-VHIKG--ENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELG 405
              D+I AP+VFLC  C+  +GD+ ++  S+     + L+    RVS   + G   HI G  + L CL         H    G S+ +G  YISTPR LD +R +F  D  AI SY LG
Sbjct:   63 EEDDIDAPVVFLCGSCKLPVGDSLSWAGSEEENNQIILK----RVSDNVIVGKETHIAGTIKELGCLVV-------HLTCGGCSSLLGLVYISTPRKLDYIRSLFCLDVAAIESYVLG 169          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A397TLI7_9GLOM (Yippee zinc-binding/DNA-binding /Mis18, centromere assembly-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TLI7_9GLOM)

HSP 1 Score: 68.2 bits (165), Expect = 3.620e-11
Identity = 39/122 (31.97%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   55 PDHN---DEISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTP--CRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELG 405
            P HN    EI+ PLVF C+ CR ++GD++AFV++D    SV L   P   R+    L+     +G ++   +  +  +       G ++T+G+ + +TPR LD +RD++  + D +  Y+LG
Sbjct:   14 PQHNRVLQEITGPLVFQCLKCRLIVGDSFAFVAADRELNSVVLYAKPHNLRIGTDLLWSR---EGIDIGSTYIMIYCN-------GCNSTLGKVWRTTPRKLDYIRDLYTLNLDYVMIYQLG 125          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A015K6Q5_RHIIW (Mis18 domain-containing protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=A0A015K6Q5_RHIIW)

HSP 1 Score: 68.2 bits (165), Expect = 3.730e-11
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   55 PDHN---DEISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTP--CRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELG 405
            P HN    EI+ PLVF C+ CR ++GD++AFV++D    SV L   P   RV    L+     +G ++   +  +  +       G + T+G+ + +TPR LD +RD++  + D +  Y+LG
Sbjct:   14 PQHNRVLQEITGPLVFQCLKCRLIVGDSFAFVTADRDLNSVVLYAKPHNIRVGTDLLWSR---EGIDIGSTYIMIYCN-------GCNLTLGKVWRTTPRKLDYIRDLYTLNLDCVMIYQLG 125          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A0D2WKG6_CAPO3 (Mis18 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKG6_CAPO3)

HSP 1 Score: 66.6 bits (161), Expect = 7.920e-11
Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   46 AASPDHNDEISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGF---VHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGR 408
            AA    N+E    +VF C  CRS+LGD+ A+V+      ++TL      VSP  L        + G +  C +  L         AG +A+IGR Y STPR  D +RD + F  D + SY +G+
Sbjct:   16 AADEAANEEEPIAVVFQCSECRSILGDSCAYVTPVDDLNAITLAA----VSPAVLIAKELQTSVSGVDTGCGYYTL-------TCAGCNASIGRMYCSTPRQFDIIRDHYTFHIDCLTSYTIGK 128          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A5D6YEM6_9STRA (Mis18 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEM6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.800e-11
Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 1
Query:   70 EISAPLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRCELLSEV 429
            E+SAP+VF C  CRSV GD++AFV S+A    VTL      V+            +         G S +    A     +GR+Y++TP  LDA+R +F F T AI SY+LG  +L + V
Sbjct:  166 EVSAPVVFQCGTCRSVFGDSYAFVGSNAELLLVTLSA----VTNVTTGAEPQTSRDGADA-----GSSFQELLCAQCQTVLGRSYLTTPLALDALRGLFSFATTAIASYQLGYPQLQAAV 276          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: UPI001B88B868 (protein Mis18-alpha-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B868)

HSP 1 Score: 63.2 bits (152), Expect = 1.510e-9
Identity = 38/124 (30.65%), Postives = 59/124 (47.58%), Query Frame = 1
Query:   55 PDHNDEIS--APLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGFVHIKGENLPCLFTF---LGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRC 411
            P  N++ S  AP VF C GC+++LGDT A+V ++   K++TL     +V          +K +   C        G S       G   TIG+ Y +T + LD++R  F      + SY++G C
Sbjct:    5 PGENEKSSDDAPFVFQCAGCKTILGDTTAWVCTNETLKTITLHSVSKQVK---------VKNDLFTCTSPSTVDFGSSYNDLMCCGCDTTIGKLYHTTNQKLDSVRGHFSLLLHKLISYQIGSC 119          
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Match: A0A077QUS9_9BASI (Protein mis18-alpha n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077QUS9_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 2.380e-9
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   82 PLVFLCVGCRSVLGDTWAFVSSDAATKSVTLRGTPCRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGASATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRCELLSEVDD 435
            PL+F C  C  +LGD+ +FV++D     V L  T      +C+           P  F  +G +  + +  G + TIGR+Y +TPR LD +RD F  + D I +Y+LG      EVDD
Sbjct:  180 PLIFQCRQCHRLLGDSLSFVATDTELGYVILSNTT-----QCVVQDAAYSTSTDPS-FKDVGSTFNNLRCVGCNVTIGRSYRTTPRDLDDLRDFFSLEVDGIYTYQLGS-NWTREVDD 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1644.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M9M608_PSEA33.210e-1435.94Mis18 domain-containing protein n=3 Tax=Moesziomyc... [more]
A0A8K1CW57_PYTOL5.460e-1236.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000A2A5E8B8.190e-1235.38protein Mis18-alpha n=1 Tax=Exaiptasia diaphana Ta... [more]
A0A3P8ZUE9_ESOLU1.520e-1137.29MIS18 kinetochore protein A n=2 Tax=Esox lucius Ta... [more]
A0A397TLI7_9GLOM3.620e-1131.97Yippee zinc-binding/DNA-binding /Mis18, centromere... [more]
A0A015K6Q5_RHIIW3.730e-1132.79Mis18 domain-containing protein n=6 Tax=Rhizophagu... [more]
A0A0D2WKG6_CAPO37.920e-1134.68Mis18 domain-containing protein n=1 Tax=Capsaspora... [more]
A0A5D6YEM6_9STRA8.800e-1137.50Mis18 domain-containing protein n=1 Tax=Pythium br... [more]
UPI001B88B8681.510e-930.65protein Mis18-alpha-like n=1 Tax=Gigantopelta aegi... [more]
A0A077QUS9_9BASI2.380e-934.75Protein mis18-alpha n=1 Tax=Melanopsichium pennsyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1644contigP-wetherbeei_contig1644:4335..4963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8479.XP_005283969.1
Preferred nameMIS18A
PFAMsYippee-Mis18
Model size441
Max annot lvl33208|Metazoa
KEGG koko:K11564
Hectar predicted targeting categorysignal peptide
GOsGO:0000775,GO:0000785,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007059,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031055,GO:0031497,GO:0031974,GO:0031981,GO:0034080,GO:0034508,GO:0034622,GO:0034724,GO:0034728,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0061641,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0098687
Exons2
Evalue2.76e-15
EggNOG OGs2E2HP@1|root,2S9R8@2759|Eukaryota,39WJI@33154|Opisthokonta,3BP70@33208|Metazoa,3CW0H@33213|Bilateria,487IY@7711|Chordata,4982C@7742|Vertebrata,4CI1K@8459|Testudines
DescriptionYippee zinc-binding/DNA-binding /Mis18, centromere assembly
Cds size441
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.2473009-CDS-P-wetherbeei_contig1644:4334..46371683186087.2473009-CDS-P-wetherbeei_contig1644:4334..4637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1644 4335..4637 +
1683186087.2611132-CDS-P-wetherbeei_contig1644:4825..49631683186087.2611132-CDS-P-wetherbeei_contig1644:4825..4963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1644 4826..4963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1644.3.1prot_P-wetherbeei_contig1644.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1644 4335..4963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1644.3.1

>prot_P-wetherbeei_contig1644.3.1 ID=prot_P-wetherbeei_contig1644.3.1|Name=mRNA_P-wetherbeei_contig1644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MAAAGLWPSGAAGAFAASPDHNDEISAPLVFLCVGCRSVLGDTWAFVSSD
AATKSVTLRGTPCRVSPKCLFGFVHIKGENLPCLFTFLGRSERHHQGAGA
SATIGRTYISTPRHLDAMRDMFVFDTDAICSYELGRCELLSEVDDPP
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mRNA from alignment at P-wetherbeei_contig1644:4335..4963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1644.3.1 ID=mRNA_P-wetherbeei_contig1644.3.1|Name=mRNA_P-wetherbeei_contig1644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=629bp|location=Sequence derived from alignment at P-wetherbeei_contig1644:4335..4963+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTGCAGGACTTTGGCCCAGCGGCGCTGCAGGAGCCTTCGCTGC AAGCCCTGACCATAACGATGAGATTAGCGCGCCGTTGGTGTTCCTATGCG TCGGCTGCCGGAGCGTCCTCGGCGACACCTGGGCGTTTGTCTCCAGCGAT GCCGCGACGAAATCAGTAACCTTGCGAGGTACGCCCTGTCGCGTGTCGCC AAAATGCTTGTTCGGATTCGTTCATATCAAAGGAGAAAACTTGCCGTGTC TATTCACATTTCTCGGCAGGAGTGAGCGGCATCATCAAGGAGCAGGCGCC AGTGTTCTCGACGCAGGGCTTCGATGCGTGTTCCACCTATCAGCATTTAA AATGCAGGCGATGCAAGGTATGTTACTATATCAGCATCATGTTAGTGGTT GGTGCAACAGTGTAATCCGTTAGGGTCCTTCTTATGGGTTTTCAAGATTG CCAACTACGCGGCACTTCCTCTTTCCTCCATTATCAAACAGGCCACCATC GGCCGCACGTACATTTCGACGCCGCGACACCTCGACGCGATGCGCGACAT GTTCGTATTCGACACGGACGCCATTTGCAGTTACGAGCTCGGCCGCTGCG AACTCCTTTCTGAAGTCGACGACCCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1644:4335..4963+

>mRNA_P-wetherbeei_contig1644.3.1 ID=mRNA_P-wetherbeei_contig1644.3.1|Name=mRNA_P-wetherbeei_contig1644.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig1644:4335..4963+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTGCAGGACTTTGGCCCAGCGGCGCTGCAGGAGCCTTCGCTGC
AAGCCCTGACCATAACGATGAGATTAGCGCGCCGTTGGTGTTCCTATGCG
TCGGCTGCCGGAGCGTCCTCGGCGACACCTGGGCGTTTGTCTCCAGCGAT
GCCGCGACGAAATCAGTAACCTTGCGAGGTACGCCCTGTCGCGTGTCGCC
AAAATGCTTGTTCGGATTCGTTCATATCAAAGGAGAAAACTTGCCGTGTC
TATTCACATTTCTCGGCAGGAGTGAGCGGCATCATCAAGGAGCAGGCGCC
AGTGCCACCATCGGCCGCACGTACATTTCGACGCCGCGACACCTCGACGC
GATGCGCGACATGTTCGTATTCGACACGGACGCCATTTGCAGTTACGAGC
TCGGCCGCTGCGAACTCCTTTCTGAAGTCGACGACCCGCCA
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