mRNA_P-wetherbeei_contig16431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16431.1.1
Unique NamemRNA_P-wetherbeei_contig16431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16431.1.1 vs. uniprot
Match: A0A836CPV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.030e-5
Identity = 33/78 (42.31%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:    4 EAKTNVVGGRPKERLGEQGGFTHGVVIHHKN-PGDLVNLREE-QHGVVLHNSSTLVPDERFELKTNMVRPDERYGEHG 231
            +  TN VGGRP ER G QGG+THGV +     P D+   +E   HG VL  S++L P+   EL+       ER G  G
Sbjct:    9 DGHTNAVGGRPDERHGFQGGWTHGVTVFCGGVPHDVRPPKETTNHGTVLFTSASLRPNLEDELRIKSCSDGEREGRSG 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CPV2_9STRA1.030e-542.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16431contigP-wetherbeei_contig16431:2..235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.8968859-CDS-P-wetherbeei_contig16431:1..2351683186086.8968859-CDS-P-wetherbeei_contig16431:1..235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16431 2..235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16431.1.1prot_P-wetherbeei_contig16431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16431 2..235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16431.1.1

>prot_P-wetherbeei_contig16431.1.1 ID=prot_P-wetherbeei_contig16431.1.1|Name=mRNA_P-wetherbeei_contig16431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
YEAKTNVVGGRPKERLGEQGGFTHGVVIHHKNPGDLVNLREEQHGVVLHN
SSTLVPDERFELKTNMVRPDERYGEHGG
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mRNA from alignment at P-wetherbeei_contig16431:2..235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16431.1.1 ID=mRNA_P-wetherbeei_contig16431.1.1|Name=mRNA_P-wetherbeei_contig16431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig16431:2..235- (Phaeothamnion wetherbeei SAG_119_79)
TACGAGGCGAAGACCAACGTGGTCGGCGGCAGACCAAAGGAGAGGCTCGG
TGAGCAAGGGGGCTTCACGCACGGCGTCGTGATTCACCACAAGAATCCTG
GTGACCTCGTCAACCTGCGCGAAGAGCAGCACGGCGTCGTGCTGCACAAC
TCTTCCACCCTCGTGCCCGACGAGCGCTTCGAGCTGAAGACTAACATGGT
CCGCCCTGACGAGCGGTACGGTGAACACGGAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16431:2..235-

>mRNA_P-wetherbeei_contig16431.1.1 ID=mRNA_P-wetherbeei_contig16431.1.1|Name=mRNA_P-wetherbeei_contig16431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig16431:2..235- (Phaeothamnion wetherbeei SAG_119_79)
TACGAGGCGAAGACCAACGTGGTCGGCGGCAGACCAAAGGAGAGGCTCGG
TGAGCAAGGGGGCTTCACGCACGGCGTCGTGATTCACCACAAGAATCCTG
GTGACCTCGTCAACCTGCGCGAAGAGCAGCACGGCGTCGTGCTGCACAAC
TCTTCCACCCTCGTGCCCGACGAGCGCTTCGAGCTGAAGACTAACATGGT
CCGCCCTGACGAGCGGTACGGTGAACACGGAGGT
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