mRNA_P-wetherbeei_contig16430.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16430.2.1
Unique NamemRNA_P-wetherbeei_contig16430.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A835ZF36_9STRA (K(+) efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF36_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.550e-32
Identity = 54/86 (62.79%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 GLEGRPLVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYTR 258
            G+EGR +VVICGFGPVGQ+ G+LI++P VS+ L  A+++AFDLNPKRVSESR +G+PV+YGDG+QPKV+  AG+ +P+  VVTY+ 
Sbjct:  533 GVEGRDMVVICGFGPVGQIVGSLISSPTVSNALNNAKFIAFDLNPKRVSESRKKGYPVYYGDGSQPKVIETAGINNPKALVVTYSN 618
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A835ZEK7_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.330e-30
Identity = 55/83 (66.27%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    7 EGRPLVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYT 255
            EG+ LVVICGFGPVGQ+  +LI+AP VS  L GA +VAFDL+P+RVS +RA+G+PVFYGDG+QPKV+  AG+ DPR  VVTY+
Sbjct:  446 EGQDLVVICGFGPVGQIVASLISAPAVSGALCGARFVAFDLDPRRVSAARARGYPVFYGDGSQPKVIETAGIADPRALVVTYS 528
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: D7FKF7_ECTSI (Contains similarity several bacterial glutathione-regulated potassium efflux system proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF7_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.630e-30
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 GLEGRPLVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYTR 258
            GL G+  VVICGFGPVGQ+ G+L++ PV+  +LG A+YVAFDLNP RV +S  QGFPVFYGDGT+P+VL  AG+ +P+  VVTY+ 
Sbjct:   98 GLGGQEKVVICGFGPVGQIVGSLLSTPVIKDKLG-ADYVAFDLNPIRVRQSMEQGFPVFYGDGTEPEVLKTAGMGNPKAIVVTYSN 182
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A6H5JAW2_9PHAE (RCK N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.150e-29
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 GLEGRPLVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYTR 258
            GL G+  VVICGFGPVGQ+ G+L++ PV+  +LG A+YVAFDLNPKRV +S  QGFPVFYGDGT+P+VL  AG+ +P+  VVTY+ 
Sbjct:  604 GLGGQEKVVICGFGPVGQIVGSLLSTPVIKDKLG-ADYVAFDLNPKRVRQSMEQGFPVFYGDGTEPEVLKTAGMGNPKAIVVTYSN 688
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A7S0VBI3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBI3_9CRYP)

HSP 1 Score: 101 bits (251), Expect = 9.540e-25
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   19 LVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYT 255
            +VVICGFGP+GQ  G+L+++  +  E    EYVAFDLNP+RV E R  G  VFYGDG+QP VL  AGVT+PR   VTYT
Sbjct:   31 VVVICGFGPIGQTVGSLLSSQYLKDESLRIEYVAFDLNPQRVDEGRKMGISVFYGDGSQPNVLRAAGVTNPRVICVTYT 109
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A7S0UF61_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UF61_HEMAN)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   19 LVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYT 255
            +VVICGFGP+GQ  G+L+++  +  E    +YVAFDLNP RV E   +G  VFYGDG+QP VL  AGVT+PR   VTYT
Sbjct:  466 VVVICGFGPIGQTVGSLLSSQYLKDESLRIDYVAFDLNPDRVEEGSKRGIKVFYGDGSQPNVLRAAGVTNPRVICVTYT 544
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A7S3UFH0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFH0_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-17
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   22 VVICGFGPVGQVTGALINAPVVSS--------ELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYTR 258
            VV+CGFGPVGQV   L+++P+ +S        + G ++YVAFDLN  RV  +R +GF V++GDG++P VL  AGV +PR FVV +++
Sbjct:  438 VVLCGFGPVGQVLANLLSSPLSASTGQDGGTEQSGVSKYVAFDLNIPRVKNARQKGFVVYFGDGSRPDVLKAAGVLNPRAFVVLHSQ 524
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: B9RX36_RICCO (Glutathione-regulated potassium-efflux system protein kefB, putative n=4 Tax=Ricinus communis TaxID=3988 RepID=B9RX36_RICCO)

HSP 1 Score: 85.9 bits (211), Expect = 1.170e-17
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    7 EGRPLVVICGFGPVGQVTGALINAPVVS---SELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYT 255
            +G   V+I GFG +GQV    ++AP+ S   ++L G  YVAFDLNP  V  SR  GFPV YGDG++P VL  AG++ P+ F++ +T
Sbjct:  488 DGSEPVIILGFGQMGQVLANFLSAPLASGIDADLAGWPYVAFDLNPSVVKASRRLGFPVLYGDGSRPAVLQTAGISSPKAFMIMHT 573
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: UPI000B8CD855 (K(+) efflux antiporter 3, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD855)

HSP 1 Score: 84.7 bits (208), Expect = 2.950e-17
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    7 EGRPLVVICGFGPVGQVTGALINAPVVS---SELGGAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTY 252
            +G   VVI GFG +GQV    ++ P+ S   SE  G  YVAFDLNP  V ESR  GFP+FYGDG++P VL  AG++ P+  ++ Y
Sbjct:  409 DGSEPVVIVGFGQMGQVLANFLSTPLASGIDSEPVGWPYVAFDLNPSVVKESRKLGFPIFYGDGSRPSVLQSAGISSPKAVMIMY 493
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BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Match: A0A067FWY8_CITSI (RCK N-terminal domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FWY8_CITSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.730e-17
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    7 EGRPLVVICGFGPVGQVTGALINAPVVSSELG---GAEYVAFDLNPKRVSESRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYT 255
            EG   VVI GFG +GQV   L++AP+ S   G   G  +VAFDLNP  V ESR  GFP+ YGD ++P VL  AG+T P+  ++ YT
Sbjct:  226 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16430.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF36_9STRA5.550e-3262.79K(+) efflux antiporter 3 n=1 Tax=Tribonema minus T... [more]
A0A835ZEK7_9STRA1.330e-3066.27Sodium/hydrogen exchanger family-domain-containing... [more]
D7FKF7_ECTSI6.630e-3061.63Contains similarity several bacterial glutathione-... [more]
A0A6H5JAW2_9PHAE7.150e-2962.79RCK N-terminal domain-containing protein n=1 Tax=E... [more]
A0A7S0VBI3_9CRYP9.540e-2559.49Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0UF61_HEMAN1.030e-2156.96Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S3UFH0_9CHLO1.160e-1748.28Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
B9RX36_RICCO1.170e-1747.67Glutathione-regulated potassium-efflux system prot... [more]
UPI000B8CD8552.950e-1749.41K(+) efflux antiporter 3, chloroplastic-like n=1 T... [more]
A0A067FWY8_CITSI3.730e-1750.00RCK N-terminal domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16430contigP-wetherbeei_contig16430:842..1480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKF7
PFAMsNa_H_Exchanger,TrkA_N
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009643,GO:0009657,GO:0009658,GO:0009893,GO:0009987,GO:0010109,GO:0015075,GO:0015318,GO:0016020,GO:0016043,GO:0019222,GO:0022857,GO:0022890,GO:0031323,GO:0031325,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0065007,GO:0071840,GO:0098655,GO:1905157
Exons2
Evalue1.09e-30
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_002230.1
Descriptionsolute:proton antiporter activity
Cds size261
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.8503027-CDS-P-wetherbeei_contig16430:841..8951683186086.8503027-CDS-P-wetherbeei_contig16430:841..895Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16430 842..895 +
1683186086.8637042-CDS-P-wetherbeei_contig16430:1273..14801683186086.8637042-CDS-P-wetherbeei_contig16430:1273..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16430 1274..1480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16430.2.1prot_P-wetherbeei_contig16430.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16430 842..1480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16430.2.1

>prot_P-wetherbeei_contig16430.2.1 ID=prot_P-wetherbeei_contig16430.2.1|Name=mRNA_P-wetherbeei_contig16430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
GLEGRPLVVICGFGPVGQVTGALINAPVVSSELGGAEYVAFDLNPKRVSE
SRAQGFPVFYGDGTQPKVLNIAGVTDPRCFVVTYTR*
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mRNA from alignment at P-wetherbeei_contig16430:842..1480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16430.2.1 ID=mRNA_P-wetherbeei_contig16430.2.1|Name=mRNA_P-wetherbeei_contig16430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig16430:842..1480+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTTAGAAGGGCGGCCGCTGGTGGTAATTTGCGGCTTCGGCCCCGTCGG
CCAGGTGAGCGCTGAGCGAACCTAGGGGGTGGTGATATGAGTTGGGAGGA
GGCTTTTGTTTCTTGACTCCAGGATCATGCGCGGTGCCGAGTGCTCTTTC
TCGCTTGGTTCATTCTCTGCGTCCAGCGCTCGTCACTCTTGACTCGGTTA
GTACGAGTAATGTCTGCTCAGTTCACTTTGTGTAGGGCAGCTGCCGTTTA
ATGCTCGCATCTGAAGGGGGGAGGGGGGGATGTCGTGGGTGTTAGGGATA
GGGTCAGCAGGTGAGACGTCCTTCATAAAGCTTGAAGCTATAACGCCGAT
GGTTCGTCCCGCTGTATCTCACACCGTTGCCAGCCGTCTTCCCATCCATG
CCATCCTTCCGGCTTCGTCGAACCTCTTGCAGGTGACGGGCGCACTGATC
AACGCGCCGGTCGTGAGCTCGGAATTGGGCGGCGCGGAATATGTCGCCTT
TGACTTGAACCCTAAGCGGGTCAGTGAGAGCCGGGCACAGGGCTTCCCGG
TCTTTTACGGTGACGGCACGCAGCCGAAGGTGCTCAACATCGCCGGTGTC
ACCGATCCGCGCTGCTTCGTTGTGACTTACACCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16430:842..1480+

>mRNA_P-wetherbeei_contig16430.2.1 ID=mRNA_P-wetherbeei_contig16430.2.1|Name=mRNA_P-wetherbeei_contig16430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig16430:842..1480+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTTAGAAGGGCGGCCGCTGGTGGTAATTTGCGGCTTCGGCCCCGTCGG
CCAGGTGACGGGCGCACTGATCAACGCGCCGGTCGTGAGCTCGGAATTGG
GCGGCGCGGAATATGTCGCCTTTGACTTGAACCCTAAGCGGGTCAGTGAG
AGCCGGGCACAGGGCTTCCCGGTCTTTTACGGTGACGGCACGCAGCCGAA
GGTGCTCAACATCGCCGGTGTCACCGATCCGCGCTGCTTCGTTGTGACTT
ACACCAGGTGA
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