mRNA_P-wetherbeei_contig1643.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1643.1.1
Unique NamemRNA_P-wetherbeei_contig1643.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1643.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1643contigP-wetherbeei_contig1643:824..1877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size543
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_004430.1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.656341-UTR-P-wetherbeei_contig1643:823..9711683186086.656341-UTR-P-wetherbeei_contig1643:823..971Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1643 824..971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.6644106-CDS-P-wetherbeei_contig1643:971..10291683186086.6644106-CDS-P-wetherbeei_contig1643:971..1029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1643 972..1029 +
1683186086.6722796-CDS-P-wetherbeei_contig1643:1230..12821683186086.6722796-CDS-P-wetherbeei_contig1643:1230..1282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1643 1231..1282 +
1683186086.6796567-CDS-P-wetherbeei_contig1643:1420..15281683186086.6796567-CDS-P-wetherbeei_contig1643:1420..1528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1643 1421..1528 +
1683186086.6871529-CDS-P-wetherbeei_contig1643:1702..18771683186086.6871529-CDS-P-wetherbeei_contig1643:1702..1877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1643 1703..1877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1643.1.1prot_P-wetherbeei_contig1643.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1643 972..1877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1643.1.1

>prot_P-wetherbeei_contig1643.1.1 ID=prot_P-wetherbeei_contig1643.1.1|Name=mRNA_P-wetherbeei_contig1643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MMRCTLRSALVLFSAIFATVARGDDGDLPPNGPETDSCCGYGPDCCHDNV
VLSFPDASVVIYDDSCPSGGLWCDPNGVSCCRWCSYDCSAVDGACFPCSD
LGRDGGGDYDDHDDDDDGPGGGPPPPRGPQG
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mRNA from alignment at P-wetherbeei_contig1643:824..1877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1643.1.1 ID=mRNA_P-wetherbeei_contig1643.1.1|Name=mRNA_P-wetherbeei_contig1643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-wetherbeei_contig1643:824..1877+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCCTTTCAAACAAAGCTGACTCTTCATCTCGATCGATGTGAGGGCG
AAAGAGGGTGATGGATAGGGTCACTTGCGGGGTCCCAGAGCCATTCGGTC
ATACAGTTGCAGGGCAAAGGATTTCAAGACAAAACAGGAAAAACGACCAT
GATGCGATGCACGCTGCGTAGTGCACTGGTGCTATTCTCGGCAATCTTCG
CTACAGGTCATTGTCCCAGTTTCCGCCTTCTTCATGAGTTCGGGCGCTGC
ACCGGCGGTACATCTTGCAAAGACAGCAGGATGGAGGCATGGAAAGCCGT
TAGTGCAGCAATGCAGCAGGACCTCCTCAAAGAGTGACTGCAGGAAGATA
CGTGATAAAAGTGCTCTTTCTCTCTTATCGAATCACCTTTCCTCTTCCTC
TTTGCAGTGGCACGAGGCGACGATGGTGATCTCCCACCGAACGGGCCTGA
GACCGACAGGTTGGTCTGAAGGATCGCCTGGTTCACTTCGTTGGGGCTAT
TGCTGACGAGTCAATCCCTGCCTCCCACTTTTAACCATATTCTCTCGCGA
CGCTGCATTTCCCATTGAACCCGTTTCATGCACGCTGCCGCCAACAGCTG
CTGCGGCTATGGGCCGGACTGCTGCCACGACAATGTGGTGCTAAGCTTCC
CCGATGCCTCGGTCGTCATCTACGATGACTCGTGCCCCAGCGGAGGGCTG
TGGTGGTAAGCCATTCTGTGCACTGCGAGAAGTCGATACGACGAGCTGCC
ACCGTTCAGCACTGATTCATTTCTGACAGCGCTTCGCATTCTACAACCGG
TCCACTCGTTTTATGTTTTCATGACGCAGAGCCCTTTGGTCCCTTTTCCG
CCGCCGCCCTAAAAATGACCCCATCGCAGCGACCCCAATGGAGTCAGCTG
CTGCCGGTGGTGCTCGTACGACTGCAGCGCAGTTGACGGCGCCTGCTTCC
CTTGCTCAGACCTCGGCCGCGACGGCGGCGGTGACTATGACGACCACGAC
GATGATGACGACGGCCCCGGTGGCGGCCCGCCGCCGCCGCGGGGCCCGCA
GGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1643:824..1877+

>mRNA_P-wetherbeei_contig1643.1.1 ID=mRNA_P-wetherbeei_contig1643.1.1|Name=mRNA_P-wetherbeei_contig1643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig1643:824..1877+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGATGCACGCTGCGTAGTGCACTGGTGCTATTCTCGGCAATCTT
CGCTACAGTGGCACGAGGCGACGATGGTGATCTCCCACCGAACGGGCCTG
AGACCGACAGCTGCTGCGGCTATGGGCCGGACTGCTGCCACGACAATGTG
GTGCTAAGCTTCCCCGATGCCTCGGTCGTCATCTACGATGACTCGTGCCC
CAGCGGAGGGCTGTGGTGCGACCCCAATGGAGTCAGCTGCTGCCGGTGGT
GCTCGTACGACTGCAGCGCAGTTGACGGCGCCTGCTTCCCTTGCTCAGAC
CTCGGCCGCGACGGCGGCGGTGACTATGACGACCACGACGATGATGACGA
CGGCCCCGGTGGCGGCCCGCCGCCGCCGCGGGGCCCGCAGGGC
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