mRNA_P-wetherbeei_contig16426.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16426.2.1
Unique NamemRNA_P-wetherbeei_contig16426.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F3YGG2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YGG2_9PROT)

HSP 1 Score: 161 bits (408), Expect = 2.490e-49
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    7 MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            MNQ +AL VVRSLANGVDPD+GEVF A+S YQR QTVRAL+ AA+ALE+ ER ERR++ LPAKTG PWTEDEDR LLAGFDAGR + +L+  HQRTQ GVR+RL+KYGRL +
Sbjct:    4 MNQSEALSVVRSLANGVDPDSGEVFPADSVYQRAQTVRALYAAAEALEKAERFERRKQQLPAKTGEPWTEDEDRRLLAGFDAGRGLPDLAAAHQRTQTGVRARLVKYGRLAA 115
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F4AUR5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AUR5_9PROT)

HSP 1 Score: 156 bits (395), Expect = 2.380e-47
Identity = 79/112 (70.54%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:    1 IRMNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRL 336
            I M   +AL +VRSLANGVDP  GE FA ESPYQR +TVRALFVAA+ALEQ  R ERRR  LPAKTG PW+E+EDR LLA FDAGR +A+L+ EHQRTQ G+R+RL+KYGRL
Sbjct:    2 IWMEHSEALSIVRSLANGVDPGNGEAFAPESPYQRVETVRALFVAAEALEQAGRAERRRSELPAKTGQPWSENEDRNLLASFDAGRGLADLAAEHQRTQTGIRARLVKYGRL 113
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F4ES57_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4ES57_9PROT)

HSP 1 Score: 156 bits (395), Expect = 2.380e-47
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 IRMNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            I MNQ +AL +VR+LANGVDP +GE F   SPYQR  TVRALF AAQALEQ ER ERRR  LPAKTG PW+E+EDR+LLA FDAGR +AEL+  HQRTQ G+R+RL+KYGRL +
Sbjct:    2 ISMNQTEALGIVRALANGVDPASGEAFPTGSPYQRADTVRALFAAAQALEQAERIERRRVDLPAKTGQPWSEEEDRSLLASFDAGRGLAELASAHQRTQTGIRARLVKYGRLAA 115
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F4EYJ9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EYJ9_9PROT)

HSP 1 Score: 152 bits (383), Expect = 1.600e-45
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:    1 IRMNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            I MN  QALE+VR+LANGVDPD+GEVF   SPYQRPQ VRAL+ AA ALE+  R E R+  LP KTG PWTEDEDR LLA FDAGRA+ EL+  H+RT +GVR+RL+KYGRL +
Sbjct:    2 IGMNPAQALELVRALANGVDPDSGEVFPPGSPYQRPQVVRALYEAASALERSARFETRKAQLPPKTGEPWTEDEDRKLLASFDAGRALQELAAAHERTMNGVRARLVKYGRLAA 115
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A522VV86_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VV86_9PROT)

HSP 1 Score: 151 bits (382), Expect = 2.070e-45
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    7 MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            MNQ +AL +VR+LANGVDP TGE FA +S YQR  TVRALF AAQALEQ ER ERRR  LPAKTG PW+E+ED  LLA FDAGR +AEL+  H+RTQ G+R+RL+K+GRL +
Sbjct:    1 MNQSEALSIVRALANGVDPATGEAFAGDSAYQRADTVRALFAAAQALEQMERAERRRVELPAKTGQPWSEEEDCKLLASFDAGRGLAELAAAHERTQTGIRARLVKFGRLAA 112
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A537CTP1_9PROT (Uncharacterized protein n=9 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537CTP1_9PROT)

HSP 1 Score: 146 bits (369), Expect = 2.170e-43
Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 IRMNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            I M+ VQAL VVRSLANGVDP++GEVF  ES YQRP  VRAL+ AA ALE+ ER ERR+  LP KTG PW+EDEDR LLA FDAGRA+ EL+  H+RT   VR+RLLKYGR+ +
Sbjct:    2 IGMDSVQALAVVRSLANGVDPESGEVFPPESAYQRPLVVRALYEAASALERIERFERRKAQLPQKTGEPWSEDEDRKLLAAFDAGRALQELAAAHERTMGAVRARLLKYGRINA 115
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F4ASY9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4ASY9_9PROT)

HSP 1 Score: 137 bits (345), Expect = 6.210e-40
Identity = 65/100 (65.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:   43 LANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRLTS 342
            +ANG+DP+TGEVF A+S YQR Q+VRA++ AA+ALE+  R E+R+  LPAKTG PW+EDEDR LLA FDAGR +AEL+  H+RTQ GVR+RL+KYGRL +
Sbjct:    1 MANGIDPETGEVFPADSVYQRAQSVRAMYAAAEALERNARVEQRKRQLPAKTGVPWSEDEDRKLLAAFDAGRGLAELATAHERTQTGVRARLVKYGRLAA 100
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A1F4HF76_9PROT (Rap1_C domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4HF76_9PROT)

HSP 1 Score: 125 bits (314), Expect = 4.650e-35
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    7 MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRL 336
            MN VQAL +V +LANGVDP+TGEV+  ESPYQR   VRALF A++ALE     E+R++ LPA TG PW++++D  L  G+DAGR++ EL+ EH RT+  +++RL+K G+L
Sbjct:    1 MNGVQALNIVTALANGVDPETGEVYPPESPYQRAHIVRALFAASRALEHFNEVEQRKQRLPANTGKPWSDEDDARLGGGYDAGRSVEELAREHNRTRGSIQARLVKLGKL 110
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A7V9ZTQ9_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9ZTQ9_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.960e-32
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    7 MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYG 330
            M   QAL+V+R LANG+DP TGEVF  +SPYQ PQ +RALFVA +ALE+ E  +R  +SLPAK G PW+++ED+ L+A F  G  I EL+ +HQRT+  + SRL+K G
Sbjct:    1 MEVSQALKVIRILANGIDPTTGEVFDDDSPYQNPQVIRALFVAMKALEKVEERQRPEKSLPAKAGMPWSDEEDKQLVADFKQGVLIDELARKHQRTKGSIESRLVKNG 108
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BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Match: A0A2S5TJR4_9GAMM (Uncharacterized protein n=1 Tax=Solimonas fluminis TaxID=2086571 RepID=A0A2S5TJR4_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 1.740e-30
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    7 MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQRERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGVRSRLLKYGRL 336
            M   QAL +VR+LA G DP TGEVF+ ESPYQ+P  +RAL +A  AL+Q     R+ + LPA TG PWT +ED+ L+A F++G    +L+  H+RT   VRSRL+K G+L
Sbjct:    1 MEPTQALNIVRALAAGTDPATGEVFSPESPYQQPDVIRALGLAVTALQQAANAARKHQKLPAATGRPWTPEEDQALVAAFESGSTPKQLAAAHERTNGAVRSRLMKLGKL 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16426.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YGG2_9PROT2.490e-4972.32Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4AUR5_9PROT2.380e-4770.54Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ES57_9PROT2.380e-4769.30Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4EYJ9_9PROT1.600e-4567.54Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A522VV86_9PROT2.070e-4567.86Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537CTP1_9PROT2.170e-4366.67Uncharacterized protein n=9 Tax=unclassified Betap... [more]
A0A1F4ASY9_9PROT6.210e-4065.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4HF76_9PROT4.650e-3554.55Rap1_C domain-containing protein n=2 Tax=unclassif... [more]
A0A7V9ZTQ9_9BACT1.960e-3255.56Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A2S5TJR4_9GAMM1.740e-3050.91Uncharacterized protein n=1 Tax=Solimonas fluminis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16426contigP-wetherbeei_contig16426:872..1216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog701176.VIBRN418_07975
Model size345
Max annot lvl135623|Vibrionales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-26
EggNOG OGs2EGR5@1|root,33AHA@2|Bacteria,1NH3C@1224|Proteobacteria,1SIE7@1236|Gammaproteobacteria,1XYWX@135623|Vibrionales
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.6251845-UTR-P-wetherbeei_contig16426:871..8771683186086.6251845-UTR-P-wetherbeei_contig16426:871..877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16426 872..877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.633323-CDS-P-wetherbeei_contig16426:877..12161683186086.633323-CDS-P-wetherbeei_contig16426:877..1216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16426 878..1216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16426.2.1prot_P-wetherbeei_contig16426.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16426 878..1216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16426.2.1

>prot_P-wetherbeei_contig16426.2.1 ID=prot_P-wetherbeei_contig16426.2.1|Name=mRNA_P-wetherbeei_contig16426.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MNQVQALEVVRSLANGVDPDTGEVFAAESPYQRPQTVRALFVAAQALEQR
ERTERRRESLPAKTGAPWTEDEDRTLLAGFDAGRAIAELSLEHQRTQHGV
RSRLLKYGRLTS*
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mRNA from alignment at P-wetherbeei_contig16426:872..1216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16426.2.1 ID=mRNA_P-wetherbeei_contig16426.2.1|Name=mRNA_P-wetherbeei_contig16426.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16426:872..1216+ (Phaeothamnion wetherbeei SAG_119_79)
ATACGGATGAACCAGGTACAAGCACTCGAAGTGGTACGTTCGCTCGCGAA
CGGCGTCGATCCCGACACCGGCGAGGTCTTCGCGGCCGAAAGCCCGTACC
AGCGCCCGCAGACCGTGCGCGCGCTGTTCGTGGCCGCGCAGGCGCTCGAG
CAACGTGAGCGCACCGAGCGTCGCCGCGAAAGCCTGCCGGCGAAAACCGG
CGCGCCGTGGACCGAGGACGAGGACCGTACGCTGCTCGCGGGCTTCGACG
CGGGCCGCGCGATCGCCGAACTTTCGCTCGAGCACCAGCGCACGCAGCAC
GGCGTGCGCTCGCGGCTGCTCAAGTACGGCAGGCTGACTTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16426:872..1216+

>mRNA_P-wetherbeei_contig16426.2.1 ID=mRNA_P-wetherbeei_contig16426.2.1|Name=mRNA_P-wetherbeei_contig16426.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig16426:872..1216+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCAGGTACAAGCACTCGAAGTGGTACGTTCGCTCGCGAACGGCGT
CGATCCCGACACCGGCGAGGTCTTCGCGGCCGAAAGCCCGTACCAGCGCC
CGCAGACCGTGCGCGCGCTGTTCGTGGCCGCGCAGGCGCTCGAGCAACGT
GAGCGCACCGAGCGTCGCCGCGAAAGCCTGCCGGCGAAAACCGGCGCGCC
GTGGACCGAGGACGAGGACCGTACGCTGCTCGCGGGCTTCGACGCGGGCC
GCGCGATCGCCGAACTTTCGCTCGAGCACCAGCGCACGCAGCACGGCGTG
CGCTCGCGGCTGCTCAAGTACGGCAGGCTGACTTCCTGA
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