mRNA_P-wetherbeei_contig1642.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: UPI0008487555 (RING-H2 finger protein ATL66 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008487555) HSP 1 Score: 73.2 bits (178), Expect = 1.920e-11 Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 2
Query: 821 GLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILP-CAHQYHDACAAEWLSKKATCPMCKATLGSGPQWSKSPARIT 1126
GL P I+ALP + +K AA A ++ C ICLG +E GEK+++LP C H YH C WLS +++CP+C+A+L + + + P +T
Sbjct: 79 GLDPVTINALPITMVTRGRKSAAAAAVA-----------LESECCICLGVFEDGEKVKVLPACQHSYHSECVDRWLSAESSCPLCRASLRAESELHQIPVIVT 170
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A1R3FWF0_COCAP (RING-type E3 ubiquitin transferase n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3FWF0_COCAP) HSP 1 Score: 72.4 bits (176), Expect = 3.100e-11 Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 2
Query: 821 GLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILP-CAHQYHDACAAEWLSKKATCPMCKATLGSGPQWS 1105
GL P I+ALP T+ T+ K AA A+ + C+ICLG +E GEK+++LP C H YH C WLS +++CP+C+A+L Q S
Sbjct: 78 GLDPDSINALPI-TLVTRGKAAAAAAQL------------ETECSICLGVFEDGEKVKVLPSCNHSYHSECVDRWLSAESSCPLCRASLRVDSQLS 160
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A8K0DRA0_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DRA0_9ROSA) HSP 1 Score: 72.0 bits (175), Expect = 4.820e-11 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 2
Query: 818 EGLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILP-CAHQYHDACAAEWLSKKATCPMCKATLGSGP 1096
+GL+P I LP I K + + GG+GGG E A C ICLG +E G+K+++LP C H YH C +WL+ ++CP+C+A+L P
Sbjct: 75 QGLAPEAIKGLP---IVLHKSLTST---LGGSGGGCDAEHVRAECCICLGVFEDGDKVKVLPPCKHSYHPHCVDKWLANHSSCPLCRASLQGKP 162
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A6MLG3_CALJA (E3 ubiquitin protein ligase RNF167-like protein (Fragment) n=1 Tax=Callithrix jacchus TaxID=9483 RepID=A6MLG3_CALJA) HSP 1 Score: 72.0 bits (175), Expect = 5.040e-11 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2
Query: 947 VCAICLGDYEPGEKLRILPCAHQYHDACAAEWLSK-KATCPMCKATLGSGP 1096
VCAICL +YE G+KLRILPCAH YH C WL++ + TCP+CK + GP
Sbjct: 50 VCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGP 100
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A669EBV7_ORENI (RING-type domain-containing protein n=8 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A669EBV7_ORENI) HSP 1 Score: 69.3 bits (168), Expect = 8.060e-11 Identity = 38/99 (38.38%), Postives = 44/99 (44.44%), Query Frame = 2
Query: 797 RMGYYLHEGLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILPCAHQYHDACAAEWLSKKATCPMCKATLGSG 1093
R G + LS EI P+K G G GN C IC DY+ GEKLR+LPC H YH C WL TCP+C+A L G
Sbjct: 13 RQGAVVSRKLSRREIQRFPTKVFQ----------------GSSSGSGN-TQCQICFCDYDNGEKLRMLPCFHDYHVQCIDRWLKDNTTCPICRANLADG 94
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: UPI0015E2435D (E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Morone saxatilis TaxID=34816 RepID=UPI0015E2435D) HSP 1 Score: 70.1 bits (170), Expect = 1.070e-10 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 2
Query: 938 NDAVCAICLGDYEPGEKLRILPCAHQYHDACAAEWLSK-KATCPMCK 1075
N VCAICL +YE G+KLR+LPC+H YH C WL+K K TCP+CK
Sbjct: 18 NYDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTKTKKTCPVCK 64
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A1E5UW30_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5UW30_9POAL) HSP 1 Score: 68.9 bits (167), Expect = 1.160e-10 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2
Query: 914 GGGDCGEGNDAVCAICLGDYEPGEKLRILP-CAHQYHDACAAEWLSKKATCPMCKATLG 1087
GGGD + D +C IC+ YE G+ +LP CAH +H C A+WL +K TCP+C+AT+G
Sbjct: 20 GGGDVADDRD-LCVICVTPYEAGDPCSVLPGCAHMFHKPCVAQWLRRKTTCPLCRATVG 77
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A0D9VN43_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VN43_9ORYZ) HSP 1 Score: 71.6 bits (174), Expect = 1.180e-10 Identity = 51/148 (34.46%), Postives = 67/148 (45.27%), Query Frame = 2
Query: 689 LMALLLCAGMCACTSILAQRLCFHWQVLRADPA---AAARMGYYLHEGLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILP-CAHQYHDACAAEWLSKKATCPMCKATLGSGPQWSKSPAR 1120
++A LLCA +C L R + RAD + A A +GL I ALP+ + A K A A C ICL ++ GE+LR+LP C H +H AC WL ATCP C+AT+G+ P P R
Sbjct: 31 ILASLLCALICVAGLALVARCACRRRPRRADASTTSAPAVSAPCAPKGLKKKAIDALPTVSYAAGDKQQA------------------AECIICLAEFAAGEELRVLPHCGHGFHMACIDTWLGAHATCPSCRATVGTPPPALFLPGR 160
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A8C4X6F5_ERPCA (Uncharacterized LOC114662230 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4X6F5_ERPCA) HSP 1 Score: 73.2 bits (178), Expect = 1.310e-10 Identity = 38/98 (38.78%), Postives = 50/98 (51.02%), Query Frame = 2
Query: 797 RMGYYLHEGLSPAEISALPSKTIATKKKMDAAGAETGGAGGGDCGEGNDAVCAICLGDYEPGEKLRILPCAHQYHDACAAEWLSKKATCPMCKATLGS 1090
R+G + + +S A+I+ LP+KT AAG +C IC DY+ EKLRILPC H YH C WL K +TCP+C+A S
Sbjct: 198 RLGEVVTKKMSSAQINCLPTKTF---NSASAAG---------------KTICQICYCDYKEREKLRILPCLHDYHTRCVDRWLKKNSTCPICRADAAS 277
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Match: A0A6F9ALP9_9TELE (RING-type domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9ALP9_9TELE) HSP 1 Score: 70.1 bits (170), Expect = 1.490e-10 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 2
Query: 947 VCAICLGDYEPGEKLRILPCAHQYHDACAAEWLSK-KATCPMCK 1075
VCAICL +YE G+KLR+LPC+H YH+ C WL+K K TCP+CK
Sbjct: 11 VCAICLDEYEEGDKLRVLPCSHAYHNKCVDPWLTKTKKTCPVCK 54 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1642.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1642.2.1 >prot_P-wetherbeei_contig1642.2.1 ID=prot_P-wetherbeei_contig1642.2.1|Name=mRNA_P-wetherbeei_contig1642.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp MRGALTYRGAPGFAIKAALLLVCCTFYVLSADSAILCNSSVSSATEGDLTback to top mRNA from alignment at P-wetherbeei_contig1642:4417..6852+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1642.2.1 ID=mRNA_P-wetherbeei_contig1642.2.1|Name=mRNA_P-wetherbeei_contig1642.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2436bp|location=Sequence derived from alignment at P-wetherbeei_contig1642:4417..6852+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1642:4417..6852+ >mRNA_P-wetherbeei_contig1642.2.1 ID=mRNA_P-wetherbeei_contig1642.2.1|Name=mRNA_P-wetherbeei_contig1642.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig1642:4417..6852+ (Phaeothamnion wetherbeei SAG_119_79)back to top |