mRNA_P-wetherbeei_contig16419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16419.1.1
Unique NamemRNA_P-wetherbeei_contig16419.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: D7FYM1_ECTSI (NLE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM1_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.750e-80
Identity = 133/189 (70.37%), Postives = 146/189 (77.25%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            +IWN RTGR EVTLSGHADSVE I WGGEGLLYS SRDRTIKVW VE  +GR++GILVRTLVGHGHRVN LALS +A LRTGPF     A  A +  +     A AL RY  ARGGE    PERLVS SDDFTLFLW P + K+P+ARLTGHQQPVNHLA SPDGR  ASA FDKK+K+WDGRTG F+A
Sbjct:  270 KIWNTRTGRCEVTLSGHADSVEKIIWGGEGLLYSASRDRTIKVWNVEG-EGRKLGILVRTLVGHGHRVNTLALSCEAALRTGPFGKEECALKAVSKFTPEEAQAVALERYNLARGGE----PERLVSGSDDFTLFLWNPVDGKKPLARLTGHQQPVNHLAFSPDGRRFASASFDKKVKVWDGRTGTFLA 453          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A7S3XZG7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZG7_HETAK)

HSP 1 Score: 257 bits (656), Expect = 1.810e-79
Identity = 127/191 (66.49%), Postives = 146/191 (76.44%), Query Frame = 1
Query:    1 TRQIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            T +IWNVRTGR E++LSGH DSVEC++WGGEGL+Y+ SRDRTIKVW  +   G ++G LVRTLVGHGHRVN LALS+D VLRTGPFDHHGN  A+P  A+ A     A  RY   +  +  P PERLVS SDDFTL LW P E K+PV RLTGHQQ VNHL  SPDGRH ASA FDKK+K+WDGRTG+F A
Sbjct:  269 TCKIWNVRTGRCEISLSGHTDSVECVKWGGEGLIYTASRDRTIKVWDADV--GPKLGTLVRTLVGHGHRVNTLALSSDYVLRTGPFDHHGNRFASPEAAADA-----AEERYNTFKATQ--PGPERLVSGSDDFTLILWSPTEGKRPVTRLTGHQQAVNHLQFSPDGRHFASASFDKKVKVWDGRTGKFKA 450          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A836CH64_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH64_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.870e-79
Identity = 127/188 (67.55%), Postives = 147/188 (78.19%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFI 570
            ++WNVRTGR  VTLSGHADSVEC++WGGEGLLYS SRDR I VW+++  +GR+ GILVRTL GHGHRVN LALS + VLRTGPF H     A P  A      AAALARYQ A+G     +PERLVS SDDFTLFLW P E+K+P+ARLTGHQQ VNH+A SPDGR  ASA FDKK+K+WDGRTG+F+
Sbjct:  263 KVWNVRTGRCLVTLSGHADSVECVKWGGEGLLYSASRDRNIMVWSMDG-EGRKFGILVRTLAGHGHRVNTLALSCEYVLRTGPFGHKPVTFATPEEAQ-----AAALARYQEAKG----TDPERLVSGSDDFTLFLWNPVEDKKPLARLTGHQQAVNHIAFSPDGRRFASASFDKKVKVWDGRTGKFL 440          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A3R6VP79_9STRA (NLE domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VP79_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.450e-72
Identity = 120/190 (63.16%), Postives = 139/190 (73.16%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAX-LXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            +IWN RTGR   +LS H DSVEC++WGGEGLLYS SRDRTIKVWAVE   G ++G LVRTLVGH HR+N LAL+ D V RTGP+DH         T  T   +  AA ARY A R G+    PERLVS SDDFTLFLW PAE K+P+ RLTGHQQPVN L+ SPDGR+ ASA FDKK+K+W G+ G+FIA
Sbjct:  125 KIWNARTGRQVASLSSHTDSVECLKWGGEGLLYSASRDRTIKVWAVE---GDQLGKLVRTLVGHAHRINTLALNVDYVCRTGPYDHTFK------TFDTREEMQQAAQARYDAIRRGQ----PERLVSGSDDFTLFLWEPAESKKPIERLTGHQQPVNDLSFSPDGRYFASASFDKKVKIWSGKDGKFIA 301          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A7S2LPH8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LPH8_9STRA)

HSP 1 Score: 236 bits (603), Expect = 9.340e-71
Identity = 118/194 (60.82%), Postives = 140/194 (72.16%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGR-RVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAX-----LXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFI 570
            +IWNVRT R E TL+GH DS+E ++WGGEGL+Y+ SRDRTIKVW  EE DG+ RVG+LVRTLVGHGHRVN LA+S D + RTGPFDH+G  A        +         AA+A+Y A +G     E ERL+S SDDFTL LW P E K+P+ RLTGHQQ VNHLA SPD R  ASA FDKKIKLW+GR+G F+
Sbjct:  344 KIWNVRTKRCEATLAGHTDSIESVKWGGEGLIYTASRDRTIKVWNAEEGDGKGRVGLLVRTLVGHGHRVNTLAVSCDYICRTGPFDHYGKIADLEVRDRDSDEWREAAYKAAVAKYNAFKGSG---EHERLISGSDDFTLMLWHPTENKRPIKRLTGHQQAVNHLAFSPDSRFFASASFDKKIKLWNGRSGDFV 534          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A8K1CSV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSV3_PYTOL)

HSP 1 Score: 234 bits (596), Expect = 9.590e-71
Identity = 117/184 (63.59%), Postives = 135/184 (73.37%), Query Frame = 1
Query:   22 RTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            RTGR   +LSGH DSVEC++WGGEGLLYS SRDRTIKVWA+E  DG  VG LVRTLVGHGHR+N LAL+ D V R+GPF H          AS   +  AA  RY A R  +    PERLVS SDDFTLF W PAE K+P+ RL GHQQPVNHL+ SPDGR+ ASA FDKK+K+W+G+TG+FIA
Sbjct:  257 RTGRMLTSLSGHTDSVECVKWGGEGLLYSASRDRTIKVWAME--DGDHVGKLVRTLVGHGHRINTLALNVDYVCRSGPFGHSNQK-----FASREEMQQAAQERYNAVRKNQ----PERLVSGSDDFTLFFWEPAENKKPIERLVGHQQPVNHLSFSPDGRYFASASFDKKVKIWNGQTGKFIA 429          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: K0TNB6_THAOC (NLE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNB6_THAOC)

HSP 1 Score: 235 bits (599), Expect = 1.340e-70
Identity = 116/191 (60.73%), Postives = 138/191 (72.25%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPA--TASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            ++WN RT R E T+SGH DS+E +RWGGEGL+Y+ SRDRTIKVW   E  GR  G+LVRTL GHGHRVNALALS D V RTGPFDH G+   AP+   +S     AA  A     R  +G  EPERLVS SDDFTL LW P E K+P+ RLTGHQQ VNH+A SPD R +ASA FDKK+K+W+GR+G F++
Sbjct:  299 KVWNTRTRRCEATMSGHLDSIEGVRWGGEGLVYTASRDRTIKVWNANEAKGR-TGLLVRTLTGHGHRVNALALSCDYVCRTGPFDHRGDVPDAPSGDRSSKEWREAAHRACLDKYRAFKGSGEPERLVSGSDDFTLMLWHPTESKKPLKRLTGHQQAVNHIAFSPDSRFLASASFDKKVKVWNGRSGDFVS 488          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: B8CAU3_THAPS (NLE domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAU3_THAPS)

HSP 1 Score: 234 bits (596), Expect = 4.940e-70
Identity = 116/196 (59.18%), Postives = 140/196 (71.43%), Query Frame = 1
Query:    7 QIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDG---RRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAA----LARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIA 573
            +IWNVRT R E TL+GH DS+E ++WGGEGL+Y+ SRDRTIKVW  E+  G    RVGILV+TL GHGHRVN LA+S D + RTGPFDH+G    A     +     AA    L++Y+A +G E    PERL+S SDDFTL LW P E K+P+ RLTGHQQ VNHLA SPD R  ASA FDKKIK+W+GR+G F+A
Sbjct:  310 KIWNVRTKRCEATLAGHVDSIESVKWGGEGLIYTASRDRTIKVWNAEDGQGVSASRVGILVKTLTGHGHRVNTLAVSCDYICRTGPFDHYGKIDVASKDRDSQEWREAAYQTSLSKYKAFKGSE----PERLISGSDDFTLLLWHPTESKKPLKRLTGHQQAVNHLAFSPDSRFFASASFDKKIKVWNGRSGDFVA 501          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: M4BAL9_HYAAE (NLE domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAL9_HYAAE)

HSP 1 Score: 231 bits (589), Expect = 1.940e-69
Identity = 115/182 (63.19%), Postives = 137/182 (75.27%), Query Frame = 1
Query:   25 TGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFI 570
            TGRA  +LSGH DSVECI+WGGEGL+YS SRDRTIKVWA+E   G  VG LVRTLVGHGHR+N LAL+ D V R+GPF +  N+      AS   +  AAL RY+  R G+     ERLVS SDDFTLF W P+E K+P+ARLTGHQQPVNHL+ SPDGR+ ASA FDKK+K+W+G TG+F+
Sbjct:  264 TGRAIASLSGHTDSVECIKWGGEGLMYSASRDRTIKVWAME---GDHVGKLVRTLVGHGHRINTLALNVDYVCRSGPFGYKTNS-----FASREEMQHAALKRYEEVRNGQ----TERLVSGSDDFTLFFWEPSESKKPLARLTGHQQPVNHLSFSPDGRYFASASFDKKVKIWNGHTGKFV 433          
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Match: A0A7S1G396_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G396_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.320e-69
Identity = 154/233 (66.09%), Postives = 178/233 (76.39%), Query Frame = 1
Query:    1 TRQIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEERDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATASTAXLXAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVARLTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAEPKRAK 699
            T ++WNVRT     +LSGH DSVEC++WGGEGLLY+ SRDR+IKVW+ EER     G LVRTLVGH HR+N LALSTD V RTGPFDH G        AS      AA  RY  A+  +G   PERL+S SDDFTLFLW PA  K+P+ R+TGHQQ VNH+A SPDGR+ ASA FDKK+++WDGR G+F+A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVA+PK+AK
Sbjct:  350 TVKVWNVRTASIVASLSGHTDSVECVKWGGEGLLYTASRDRSIKVWSPEER-----GKLVRTLVGHAHRINTLALSTDYVCRTGPFDHTGKK-----PASVEEAVEAAKKRYAEAKA-QG---PERLISGSDDFTLFLWEPATSKRPIERMTGHQQLVNHIAFSPDGRYAASASFDKKVRVWDGRRGKFVATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVADPKKAK 568          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYM1_ECTSI1.750e-8070.37NLE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3XZG7_HETAK1.810e-7966.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CH64_9STRA2.870e-7967.55WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A3R6VP79_9STRA1.450e-7263.16NLE domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2LPH8_9STRA9.340e-7160.82Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A8K1CSV3_PYTOL9.590e-7163.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K0TNB6_THAOC1.340e-7060.73NLE domain-containing protein n=1 Tax=Thalassiosir... [more]
B8CAU3_THAPS4.940e-7059.18NLE domain-containing protein n=1 Tax=Thalassiosir... [more]
M4BAL9_HYAAE1.940e-6963.19NLE domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7S1G396_9STRA2.320e-6966.09Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16419contigP-wetherbeei_contig16419:271..1328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYM1
Preferred nameNLE1
PFAMsNLE,WD40
Model size729
Max annot lvl2759|Eukaryota
KEGG koko:K07375,ko:K14855
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000151,GO:0001501,GO:0001655,GO:0001701,GO:0001756,GO:0001822,GO:0001824,GO:0001825,GO:0001826,GO:0003002,GO:0003674,GO:0003779,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0005856,GO:0005884,GO:0005938,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007346,GO:0007389,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009553,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009892,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010564,GO:0010605,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0015629,GO:0016043,GO:0019222,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030042,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030479,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030863,GO:0030864,GO:0031323,GO:0031324,GO:0031333,GO:0031461,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032991,GO:0033043,GO:0034622,GO:0035282,GO:0042254,GO:0042255,GO:0042273,GO:0042592,GO:0042641,GO:0042643,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043281,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045786,GO:0045861,GO:0045930,GO:0048229,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051261,GO:0051302,GO:0051336,GO:0051346,GO:0051493,GO:0051494,GO:0051495,GO:0051693,GO:0051716,GO:0051726,GO:0051782,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060828,GO:0061053,GO:0061484,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:0072001,GO:0080008,GO:0080090,GO:0090066,GO:0090263,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:1990904,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001267,GO:2001268
Exons3
Evalue2.87e-81
EggNOG OGsKOG0271@1|root,KOG0271@2759|Eukaryota
Descriptionribosomal large subunit assembly
Cds size729
COG categoryS
BRITEko00000,ko00001,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.4699662-CDS-P-wetherbeei_contig16419:270..5431683186086.4699662-CDS-P-wetherbeei_contig16419:270..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16419 271..543 +
1683186086.479626-CDS-P-wetherbeei_contig16419:681..10141683186086.479626-CDS-P-wetherbeei_contig16419:681..1014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16419 682..1014 +
1683186086.4869957-CDS-P-wetherbeei_contig16419:1205..13281683186086.4869957-CDS-P-wetherbeei_contig16419:1205..1328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16419 1206..1328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16419.1.1prot_P-wetherbeei_contig16419.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16419 271..1328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16419.1.1

>prot_P-wetherbeei_contig16419.1.1 ID=prot_P-wetherbeei_contig16419.1.1|Name=mRNA_P-wetherbeei_contig16419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
TRQIWNVRTGRAEVTLSGHADSVECIRWGGEGLLYSGSRDRTIKVWAVEE
RDGRRVGILVRTLVGHGHRVNALALSTDAVLRTGPFDHHGNAAAAPATAS
TAALAAAALARYQAARGGEGMPEPERLVSASDDFTLFLWRPAEEKQPVAR
LTGHQQPVNHLAISPDGRHIASAGFDKKIKLWDGRTGRFIATLTGHVGAV
YQVAWSSDSRLLVSASKDSTVKLWSVAEPKRAKATLPGHADEV
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mRNA from alignment at P-wetherbeei_contig16419:271..1328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16419.1.1 ID=mRNA_P-wetherbeei_contig16419.1.1|Name=mRNA_P-wetherbeei_contig16419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig16419:271..1328+ (Phaeothamnion wetherbeei SAG_119_79)
ACTCGCCAGATCTGGAATGTGCGCACGGGGCGTGCAGAGGTGACCCTCTC AGGCCACGCCGACTCAGTCGAGTGCATCCGTTGGGGCGGCGAGGGCCTCC TTTACAGCGGCTCGCGCGACCGCACCATCAAGGTGTGGGCCGTGGAGGAG CGGGACGGCCGCCGCGTCGGCATCCTGGTGCGGACGCTGGTCGGCCACGG CCACCGTGTCAACGCGCTGGCGCTCAGCACGGACGCCGTGTTGCGGACGG GGCCGTTCGACCACCACGGGAACGTCGCCAAGCCGCCAGCCAAGGGCGAC GCGGCGGAAGCGGCAACAGCGACGGCGGCAACAACGGCGGCTGCAGGAGC GGCAGCAGCGGCGGGAGCAGGAGCGGCGGCGGCGTCAGGAGCTTCATTGA AGGGAGCTGAGGCAGCGGCGGCACCGGCGACGGCTTCGACGGCGGCGCTT GCGGCGGCGGCGCTGGCACGCTACCAGGCGGCGCGTGGCGGGGAGGGCAT GCCCGAGCCTGAGCGGCTCGTGTCGGCGTCGGACGACTTCACGCTGTTCC TGTGGCGACCGGCGGAAGAGAAGCAGCCCGTGGCGCGGCTGACGGGCCAC CAGCAGCCGGTGAACCACCTGGCCATCAGCCCTGACGGCCGCCACATTGC GTCGGCTGGTTTTGACAAGAAGATCAAGCTGTGGGACGGCCGGACGGGTC GGTTCATCGCCACACTCACGGGGCACGTCGGTGCCGTCTACCAGGTGAGA AGTGTCGTCCTTTCTTTGATGAGAAGATAGGTTTTATGTGTTCATGGCAC TGCTGTCGCTGCTCGTGTCCCGGAAGCGTTCTCCCGTCCGGACTCTCGAG ACTAATTGCTTGTGGCTGTTGTTTATCGAGGGTTCTCCTGTTTTTTTACC GGGCATGTGTTTCTTCTCTTCCCCGCATGTTGCAGGTGGCATGGTCGTCG GACAGCCGGCTCCTTGTGAGCGCGAGCAAGGACAGCACGGTGAAGCTGTG GTCAGTGGCGGAGCCGAAGCGCGCGAAGGCCACTCTCCCGGGCCATGCCG ACGAAGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16419:271..1328+

>mRNA_P-wetherbeei_contig16419.1.1 ID=mRNA_P-wetherbeei_contig16419.1.1|Name=mRNA_P-wetherbeei_contig16419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig16419:271..1328+ (Phaeothamnion wetherbeei SAG_119_79)
ACTCGCCAGATCTGGAATGTGCGCACGGGGCGTGCAGAGGTGACCCTCTC
AGGCCACGCCGACTCAGTCGAGTGCATCCGTTGGGGCGGCGAGGGCCTCC
TTTACAGCGGCTCGCGCGACCGCACCATCAAGGTGTGGGCCGTGGAGGAG
CGGGACGGCCGCCGCGTCGGCATCCTGGTGCGGACGCTGGTCGGCCACGG
CCACCGTGTCAACGCGCTGGCGCTCAGCACGGACGCCGTGTTGCGGACGG
GGCCGTTCGACCACCACGGGAACGCAGCGGCGGCACCGGCGACGGCTTCG
ACGGCGGCGCTTGCGGCGGCGGCGCTGGCACGCTACCAGGCGGCGCGTGG
CGGGGAGGGCATGCCCGAGCCTGAGCGGCTCGTGTCGGCGTCGGACGACT
TCACGCTGTTCCTGTGGCGACCGGCGGAAGAGAAGCAGCCCGTGGCGCGG
CTGACGGGCCACCAGCAGCCGGTGAACCACCTGGCCATCAGCCCTGACGG
CCGCCACATTGCGTCGGCTGGTTTTGACAAGAAGATCAAGCTGTGGGACG
GCCGGACGGGTCGGTTCATCGCCACACTCACGGGGCACGTCGGTGCCGTC
TACCAGGTGGCATGGTCGTCGGACAGCCGGCTCCTTGTGAGCGCGAGCAA
GGACAGCACGGTGAAGCTGTGGTCAGTGGCGGAGCCGAAGCGCGCGAAGG
CCACTCTCCCGGGCCATGCCGACGAAGTA
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