mRNA_P-wetherbeei_contig16412.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16412.2.1
Unique NamemRNA_P-wetherbeei_contig16412.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16412.2.1 vs. uniprot
Match: A0A516H593_9PROT (Pentapeptide repeat-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H593_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 8.820e-8
Identity = 93/175 (53.14%), Postives = 117/175 (66.86%), Query Frame = 1 
Query:  121 IRDGFLVTANENGEFDYTVVTTQKSTIDDAKFAGANLGEAKLGRAMGKSTDLTNCNLRGANLAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACHFVIGEMEKCDLSRAVLPRTLADIGMSFGDMVVSHNDWLRTGGTQGAQIAIDGVDLGPIE 645
            IRDG L+  +E+G      V  + ++ID+AK AGANL  AKLG+ +G++TDL+NCN   A L GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               ++A++PR+L  +  S   +V  H  W+ T G QG ++     DL  ++
Sbjct:  115 IRDGVLLRPDEDGNL--IAVLKRATSIDNAKMAGANLTSAKLGKVVGRNTDLSNCNFSNAKLNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAIMPRSLESLDRSLQFIVKEHLTWIETLGKQGMRVDFSRYDLSDLK 287
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BLAST of mRNA_P-wetherbeei_contig16412.2.1 vs. uniprot
Match: UPI000378021A (pentapeptide repeat-containing protein n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI000378021A)

HSP 1 Score: 63.2 bits (152), Expect = 2.760e-7
Identity = 90/265 (33.96%), Postives = 128/265 (48.30%), Query Frame = 1 
Query:  127 DGFLVTANENGEFDYTVVTTQKSTIDDAKFAGANLGEAKLGRAMGKSTDLTNCNLRGANLAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACHFVIGEMEKCDLSRAVLPRTLADIGMSFGDMVVSHNDWLRTGGTQGAQIAIDGVDLGPIEWPGVTMSAAKLQRVTLVGAKFPSGRFDMSNLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDADLSPLPLAGVAGTKWHARLRGVRAHKTD 921
            +GF++    +G +   V   + ++ D      A+L +AKLGR +G+ T+LTN N R A+L GA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             + +   LPR+L  +  +  +++ SH  W+ + G +G Q  +   DL   ++ G+ + AA+L    L    F + R +M+NL                              R A LSP+ + G  G K  A L+     + D
Sbjct:  121 NGFILIRKPDGTY-VPVKNDEATSFDGINLKDADLSDAKLGRVIGRRTNLTNVNFRNADLTGAVMSNSDVSGSIFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYANTTNTSLPRSLDALDHTLRELLESHLLWINSLGQKGRQADLTKYDLQATDFAGINLQAAELSFSNLSNCTFLASRLNMANLSQAMALNSDFSDTDMRGIKLESANLTGASLRHARLSPMVILGTQGQKVAANLKSSCLDQAD 384
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BLAST of mRNA_P-wetherbeei_contig16412.2.1 vs. uniprot
Match: A0A0M2R789_9PROT (Uncharacterized protein n=6 Tax=Kiloniella TaxID=454159 RepID=A0A0M2R789_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 8.600e-6
Identity = 125/273 (45.79%), Postives = 159/273 (58.24%), Query Frame = 1 
Query:  118 DIRDGFLVTANENGEFDYTVVTTQKSTIDDAKFAGANLGEAKLGRAMGKSTDLTNCNLRGANLAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACHFVIGEMEKCDLSRAVLPRTLADIGMSFGDMVVSHNDWLRTGGTQGAQIAIDGVDLGPIEWPGVTMSAAKLQRVTLVGAKFPSGRFDMSNLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDADLSPLPLAGVAGTKWHARLRGVRAHKTDFRGAN 936
            DIR+GF++    +G +   V   + S  D      A+L +AKLGR +G+ T++TN N + A+L+GA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +  +A LPR++ D+  S  D++  H  W+ + G +G Q  +   DL   +  G+ + AA+L    L                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX    LSP+ + G  G    A L+     +TD   AN
Sbjct:  118 DIRNGFILIRKPDGTY-VPVKHDETSNFDGINLKDADLSDAKLGRVIGRRTNITNVNFKNADLSGAVMANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYANTHQASLPRSIEDLDRSIRDILEDHLVWINSLGRKGKQAILTEYDLQANDLAGINLQAAELSLTNLSNCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSPMVILGTQGNSVSANLKNCCLDQTDLESAN 389
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16412.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A516H593_9PROT8.820e-853.14Pentapeptide repeat-containing protein n=3 Tax=Alp... [more]
UPI000378021A2.760e-733.96pentapeptide repeat-containing protein n=1 Tax=Kil... [more]
A0A0M2R789_9PROT8.600e-645.79Uncharacterized protein n=6 Tax=Kiloniella TaxID=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16412contigP-wetherbeei_contig16412:421..1518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene1623
PFAMsPentapeptide
Model size1098
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.82e-17
EggNOG OGsCOG1357@1|root,COG1357@2|Bacteria,1N7U9@1224|Proteobacteria,2U1FV@28211|Alphaproteobacteria
DescriptionPFAM pentapeptide repeat protein
Cds size1098
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.3676658-CDS-P-wetherbeei_contig16412:420..15181683186086.3676658-CDS-P-wetherbeei_contig16412:420..1518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16412 421..1518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16412.2.1prot_P-wetherbeei_contig16412.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16412 421..1518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16412.2.1

>prot_P-wetherbeei_contig16412.2.1 ID=prot_P-wetherbeei_contig16412.2.1|Name=mRNA_P-wetherbeei_contig16412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=366bp
LFGANLSHACLADANLSRVDMRGAMLRGANLEGANLMRADIRDGFLVTAN
ENGEFDYTVVTTQKSTIDDAKFAGANLGEAKLGRAMGKSTDLTNCNLRGA
NLAGADLSNSNLSGVVFTGADLSDANLSGCKLNGAVLVGAIMAGANLEGA
DLCACHFVIGEMEKCDLSRAVLPRTLADIGMSFGDMVVSHNDWLRTGGTQ
GAQIAIDGVDLGPIEWPGVTMSAAKLQRVTLVGAKFPSGRFDMSNLEGSM
LAGTELSNASLRGANLDKAVIDGAILRDADLSPLPLAGVAGTKWHARLRG
VRAHKTDFRGANLKGVDFTESSLRDADFRGADLSGARLVDCDLTGADMRE
ATTTESDLRGAIGLK*
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mRNA from alignment at P-wetherbeei_contig16412:421..1518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16412.2.1 ID=mRNA_P-wetherbeei_contig16412.2.1|Name=mRNA_P-wetherbeei_contig16412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:421..1518- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCGGCGCCAACCTGTCGCATGCGTGCCTGGCCGACGCGAACCTGAG
CCGCGTCGACATGCGCGGCGCGATGCTGAGGGGCGCCAATCTCGAGGGTG
CGAACCTGATGCGCGCCGACATCCGCGACGGCTTCCTCGTCACCGCGAAC
GAGAACGGCGAGTTCGACTACACCGTCGTCACGACGCAGAAATCGACGAT
CGACGACGCCAAGTTCGCCGGCGCCAATCTGGGCGAGGCGAAGCTCGGGC
GCGCGATGGGCAAGTCGACCGACCTCACCAACTGCAACCTGCGGGGCGCC
AACCTCGCGGGTGCGGACCTGTCGAACTCGAACCTGTCGGGCGTGGTGTT
CACGGGTGCGGACCTGTCGGATGCGAACCTGTCGGGCTGCAAGCTCAACG
GGGCCGTCCTCGTCGGCGCAATCATGGCCGGCGCCAATCTCGAGGGTGCC
GATCTGTGCGCGTGCCATTTCGTCATCGGCGAGATGGAGAAATGCGACCT
GTCGCGCGCCGTGCTGCCGCGCACGCTCGCCGACATCGGCATGTCGTTCG
GCGACATGGTCGTGTCGCACAACGACTGGCTGCGCACCGGCGGCACGCAA
GGTGCGCAGATCGCCATCGACGGCGTGGATCTCGGGCCGATCGAATGGCC
GGGCGTGACGATGTCGGCGGCCAAGCTCCAGCGCGTCACGCTGGTCGGCG
CCAAGTTCCCGTCCGGGCGCTTCGACATGTCCAACCTCGAAGGCTCGATG
CTGGCCGGGACCGAACTGTCGAATGCCTCGCTGCGCGGGGCCAATCTCGA
CAAGGCGGTGATCGACGGGGCCATCCTGCGCGACGCCGACCTGTCGCCGC
TGCCGCTGGCGGGCGTGGCGGGCACCAAGTGGCACGCGCGCCTGCGCGGC
GTGCGCGCCCACAAGACCGATTTCCGCGGCGCGAACCTGAAGGGCGTGGA
TTTCACCGAATCTTCGCTGCGCGACGCCGATTTCCGCGGCGCGGACCTCT
CCGGCGCGCGGCTGGTCGATTGCGACCTGACGGGTGCCGACATGCGCGAG
GCGACGACGACCGAGTCCGACCTGCGCGGCGCCATCGGCCTCAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16412:421..1518-

>mRNA_P-wetherbeei_contig16412.2.1 ID=mRNA_P-wetherbeei_contig16412.2.1|Name=mRNA_P-wetherbeei_contig16412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:421..1518- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCGGCGCCAACCTGTCGCATGCGTGCCTGGCCGACGCGAACCTGAG
CCGCGTCGACATGCGCGGCGCGATGCTGAGGGGCGCCAATCTCGAGGGTG
CGAACCTGATGCGCGCCGACATCCGCGACGGCTTCCTCGTCACCGCGAAC
GAGAACGGCGAGTTCGACTACACCGTCGTCACGACGCAGAAATCGACGAT
CGACGACGCCAAGTTCGCCGGCGCCAATCTGGGCGAGGCGAAGCTCGGGC
GCGCGATGGGCAAGTCGACCGACCTCACCAACTGCAACCTGCGGGGCGCC
AACCTCGCGGGTGCGGACCTGTCGAACTCGAACCTGTCGGGCGTGGTGTT
CACGGGTGCGGACCTGTCGGATGCGAACCTGTCGGGCTGCAAGCTCAACG
GGGCCGTCCTCGTCGGCGCAATCATGGCCGGCGCCAATCTCGAGGGTGCC
GATCTGTGCGCGTGCCATTTCGTCATCGGCGAGATGGAGAAATGCGACCT
GTCGCGCGCCGTGCTGCCGCGCACGCTCGCCGACATCGGCATGTCGTTCG
GCGACATGGTCGTGTCGCACAACGACTGGCTGCGCACCGGCGGCACGCAA
GGTGCGCAGATCGCCATCGACGGCGTGGATCTCGGGCCGATCGAATGGCC
GGGCGTGACGATGTCGGCGGCCAAGCTCCAGCGCGTCACGCTGGTCGGCG
CCAAGTTCCCGTCCGGGCGCTTCGACATGTCCAACCTCGAAGGCTCGATG
CTGGCCGGGACCGAACTGTCGAATGCCTCGCTGCGCGGGGCCAATCTCGA
CAAGGCGGTGATCGACGGGGCCATCCTGCGCGACGCCGACCTGTCGCCGC
TGCCGCTGGCGGGCGTGGCGGGCACCAAGTGGCACGCGCGCCTGCGCGGC
GTGCGCGCCCACAAGACCGATTTCCGCGGCGCGAACCTGAAGGGCGTGGA
TTTCACCGAATCTTCGCTGCGCGACGCCGATTTCCGCGGCGCGGACCTCT
CCGGCGCGCGGCTGGTCGATTGCGACCTGACGGGTGCCGACATGCGCGAG
GCGACGACGACCGAGTCCGACCTGCGCGGCGCCATCGGCCTCAAATAG
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