mRNA_P-wetherbeei_contig16408.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16408.2.1
Unique NamemRNA_P-wetherbeei_contig16408.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16408.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16408contigP-wetherbeei_contig16408:1372..1518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1384049.CD29_16140
PFAMsEamA
Model size147
Max annot lvl91061|Bacilli
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.85e-05
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1U5JN@1239|Firmicutes,4IFAH@91061|Bacilli,3IXR4@400634|Lysinibacillus
DescriptionEamA-like transporter family
Cds size147
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.3092315-CDS-P-wetherbeei_contig16408:1371..15181683186086.3092315-CDS-P-wetherbeei_contig16408:1371..1518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16408 1372..1518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16408.2.1prot_P-wetherbeei_contig16408.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16408 1372..1518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16408.2.1

>prot_P-wetherbeei_contig16408.2.1 ID=prot_P-wetherbeei_contig16408.2.1|Name=mRNA_P-wetherbeei_contig16408.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MTRGFMPGFLAALLAVIFWGVQLPVAHDAFVAVDPFHLSTFRYLVAVLC
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mRNA from alignment at P-wetherbeei_contig16408:1372..1518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16408.2.1 ID=mRNA_P-wetherbeei_contig16408.2.1|Name=mRNA_P-wetherbeei_contig16408.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig16408:1372..1518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGTGGCTTCATGCCGGGTTTCCTGGCCGCCTTGCTCGCGGTTAT
TTTCTGGGGCGTGCAACTGCCGGTAGCGCATGACGCCTTTGTCGCGGTCG
ATCCGTTTCATCTGAGTACCTTCCGCTACCTGGTGGCGGTGCTGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16408:1372..1518+

>mRNA_P-wetherbeei_contig16408.2.1 ID=mRNA_P-wetherbeei_contig16408.2.1|Name=mRNA_P-wetherbeei_contig16408.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig16408:1372..1518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGTGGCTTCATGCCGGGTTTCCTGGCCGCCTTGCTCGCGGTTAT
TTTCTGGGGCGTGCAACTGCCGGTAGCGCATGACGCCTTTGTCGCGGTCG
ATCCGTTTCATCTGAGTACCTTCCGCTACCTGGTGGCGGTGCTGTGT
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