mRNA_P-wetherbeei_contig1640.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1640.2.1
Unique NamemRNA_P-wetherbeei_contig1640.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Match: A0A6P7TPV1_OCTVU (uncharacterized protein LOC115227578 n=2 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TPV1_OCTVU)

HSP 1 Score: 52.4 bits (124), Expect = 2.270e-5
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:   28 SASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGDLDDLTLLGMPDDSELSPSLVAAVQQLKVDLTAVGLELNMQKS----MALSPPGVGAA---------DLSATTLTRLATLGVPV 360
            SA+G QQGDPLGPV FA+ + +  H+ R+ V       +  LDD T+ G PD      ++   ++ +   L+ +GL +N  KS    +AL+P    A+         D+  T  + L  LG P+
Sbjct:   52 SATGVQQGDPLGPVLFALGVNSIAHSVRSPVN------IWYLDDATICGPPD------AVFDDLRSILPSLSDIGLSINANKSEIVNIALNPSDFTASISTCRGILSDVRITDKSNLTILGAPM 163
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BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Match: A0A7E6EHI8_OCTVU (uncharacterized protein LOC118761169 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6EHI8_OCTVU)

HSP 1 Score: 52.4 bits (124), Expect = 2.400e-5
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:   28 SASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGDLDDLTLLGMPDDSELSPSLVAAVQQLKVDLTAVGLELNMQKS----MALSPPGVGAA---------DLSATTLTRLATLGVPV 360
            SA+G QQGDPLGPV FA+ + +  H+ R+ V       +  LDD T+ G PD      ++   ++ +   L+ +GL +N  KS    +AL+P    A+         D+  T  + L  LG P+
Sbjct:   52 SATGVQQGDPLGPVLFALGVNSIAHSVRSPVN------IWYLDDATICGPPD------AVFDDLRSILPSLSDIGLSINANKSEIVNIALNPSDFTASISTCRGILSDVRITDKSNLTILGAPM 163
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BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Match: A0A6P7TVU5_OCTVU (uncharacterized protein LOC115230474 n=2 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TVU5_OCTVU)

HSP 1 Score: 51.2 bits (121), Expect = 5.650e-5
Identity = 43/128 (33.59%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:   25 WSASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGDLDDLTLLGMPDDSELSPSLVAAVQQLKV---DLTAVGLELNMQKS----MALSPPGVGAA---------DLSATTLTRLATLGVPV 360
            +SA+G QQGDPLGPV FA+ + +  H  R+ V       +  LDD T+ G PD         A    L+V    L+ +GL +N  KS    +AL+P    A+         D+  T  + L  LG P+
Sbjct:   51 YSATGVQQGDPLGPVLFALGVNSIAHFVRSPVN------IWYLDDATISGPPD---------AVFDDLRVILPSLSDIGLSINADKSKIVNIALNPSDFTASISTCRGILSDVRITDKSNLTILGAPM 163
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BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 6.040e-5
Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 1 
Query:    1 ESGKLR----VSWSASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGDLDDLTLLGMPDDSELSPSLVAAVQQLKVDLTAVGLELNMQKSMALSPPGVGAADLSA 321
            +S +LR    V  S SG QQGDPLGP+ FA+ +  A+ A  AA AAR       LDD+ L G P D      +  A++ L       GL L   KS  + P    + DL A
Sbjct:  359 QSSRLRFGKHVVASTSGVQQGDPLGPLLFALALQPALAA--AAAAARLDLCFAYLDDVVLAGSPAD------VAKALRALCEVAGQAGLILEPTKSEVVLPGAACSPDLRA 461
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BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Match: A0A812KQM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KQM1_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 6.300e-5
Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 1 
Query:    1 ESGKLR----VSWSASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGDLDDLTLLGMPDDSELSPSLVAAVQQLKVDLTAVGLELNMQKSMALSPPGVGAADLSA 321
            +S +LR    V  S SG QQGDPLGP+ FA+ +  A+ A  AA AAR       LDD+ L G P D      +  A++ L       GL L   KS  + P    + DL A
Sbjct:  426 QSSRLRFGKHVVASTSGVQQGDPLGPLLFALALQPALAA--AAAAARLDLCFAYLDDVVLAGSPAD------VAKALRALCEVAGQAGLILEPTKSEVVLPGAACSPDLRA 528
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1640.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6P7TPV1_OCTVU2.270e-532.26uncharacterized protein LOC115227578 n=2 Tax=Octop... [more]
A0A7E6EHI8_OCTVU2.400e-532.26uncharacterized protein LOC118761169 n=1 Tax=Octop... [more]
A0A6P7TVU5_OCTVU5.650e-533.59uncharacterized protein LOC115230474 n=2 Tax=Octop... [more]
A0A812N9S6_9DINO6.040e-537.84Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812KQM1_9DINO6.300e-537.84Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1640contigP-wetherbeei_contig1640:4807..5178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.0885842-CDS-P-wetherbeei_contig1640:4806..51781683186086.0885842-CDS-P-wetherbeei_contig1640:4806..5178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1640 4807..5178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1640.2.1prot_P-wetherbeei_contig1640.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1640 4807..5178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1640.2.1

>prot_P-wetherbeei_contig1640.2.1 ID=prot_P-wetherbeei_contig1640.2.1|Name=mRNA_P-wetherbeei_contig1640.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
ESGKLRVSWSASGCQQGDPLGPVFFAIRILAAMHAFRAAVAARKAFLVGD
LDDLTLLGMPDDSELSPSLVAAVQQLKVDLTAVGLELNMQKSMALSPPGV
GAADLSATTLTRLATLGVPVVHNS
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mRNA from alignment at P-wetherbeei_contig1640:4807..5178-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1640.2.1 ID=mRNA_P-wetherbeei_contig1640.2.1|Name=mRNA_P-wetherbeei_contig1640.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig1640:4807..5178- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCTGGAAAACTTCGGGTGAGTTGGTCAGCCAGCGGCTGCCAGCAGGG
CGACCCGCTCGGCCCAGTCTTCTTCGCGATCAGGATCCTCGCGGCGATGC
ACGCCTTTCGGGCCGCCGTCGCGGCCAGAAAAGCCTTTCTGGTTGGCGAT
CTTGATGACCTGACACTGCTTGGCATGCCGGACGACTCGGAGCTTTCACC
TTCCCTTGTCGCCGCGGTCCAGCAGCTGAAGGTGGATCTGACGGCGGTTG
GACTGGAGCTGAACATGCAGAAGTCGATGGCACTGAGCCCCCCGGGCGTT
GGTGCCGCCGACCTCTCTGCCACCACGCTCACCCGTCTTGCCACGCTCGG
TGTCCCGGTCGTTCACAACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1640:4807..5178-

>mRNA_P-wetherbeei_contig1640.2.1 ID=mRNA_P-wetherbeei_contig1640.2.1|Name=mRNA_P-wetherbeei_contig1640.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig1640:4807..5178- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCTGGAAAACTTCGGGTGAGTTGGTCAGCCAGCGGCTGCCAGCAGGG
CGACCCGCTCGGCCCAGTCTTCTTCGCGATCAGGATCCTCGCGGCGATGC
ACGCCTTTCGGGCCGCCGTCGCGGCCAGAAAAGCCTTTCTGGTTGGCGAT
CTTGATGACCTGACACTGCTTGGCATGCCGGACGACTCGGAGCTTTCACC
TTCCCTTGTCGCCGCGGTCCAGCAGCTGAAGGTGGATCTGACGGCGGTTG
GACTGGAGCTGAACATGCAGAAGTCGATGGCACTGAGCCCCCCGGGCGTT
GGTGCCGCCGACCTCTCTGCCACCACGCTCACCCGTCTTGCCACGCTCGG
TGTCCCGGTCGTTCACAACAGC
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