mRNA_P-wetherbeei_contig16389.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16389.1.1
Unique NamemRNA_P-wetherbeei_contig16389.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A6H5JPC1_9PHAE (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.420e-28
Identity = 73/191 (38.22%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    1 GGIIAADNKELKNQILFPRGPLFLTPLRGTMQTAPGSRMALCSEPPDDTVRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSEDRLALGFEA--------------------GPGQPA--LPLQEAWPGDEPPWTGTGARHGCSKALRQLWRDVLADVPREEAERQALMHSVGLVS 507
            G +IA  NKE     L+PRG +FLT L G+++  PGS +A+ +E  +  +RRGEAVR+ G+WFRV+ +  G+    Q  R++APL+VT +AD  +R  D  A    A                    G  +P   LPL   + GD   + G   RHGC K+LR+LWR+  A VP + AE   LM    L S
Sbjct:  172 GKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVAMTTEDMNQHIRRGEAVRISGQWFRVSSETVGN----QTLRSAAPLTVTMNADLSVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTE-FEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTS 357          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: D7FZN3_ECTSI (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.400e-18
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 GGIIAADNKELKNQILFPRGPLFLTPLRGTMQTAPGSRMALCSEPPDDTVRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLR 288
            G +IA  NKE     L+PRG +FLT L G+++  PGS +AL +E  +  +RRGEAVR+ G+WFRV+ +  G+    Q  R++APL+VT +AD  +R
Sbjct:  172 GKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGN----QTLRSAAPLTVTMNADLSVR 263          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A7S3L736_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L736_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.780e-10
Identity = 44/116 (37.93%), Postives = 57/116 (49.14%), Query Frame = 1
Query:    1 GGIIAADNKELKNQILFPRGPLFLTPLRGTM-----------------QTAPGSRMALCSEPPDDTVRRGEAVRLGGRWFRVACDL-AGHASHSQPQRASAPLSVTRDADPDLRSE 294
            G +IA  N E K++ILFPRG  FL  L G +                 +  P +        P   +RRGEAV++GG+WFRV+  + AG     QP RA APLSV    D   R+E
Sbjct:  171 GDVIAVQNSEDKDKILFPRGEPFLVELDGLIAIPRPNETKSEDTDNREKVPPETVYVETDVDPCPQIRRGEAVQVGGQWFRVSSAVKAGLPLSEQPSRAQAPLSVVSLQDLSKRNE 286          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A1E7EPK7_9STRA (TFA2_Winged_2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EPK7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-8
Identity = 44/123 (35.77%), Postives = 57/123 (46.34%), Query Frame = 1
Query:    1 GGIIAADNKELKNQILFPRGPLFLTPLRGTMQ----------------TAPGSRMA------LCSEPPDDT---VRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSE 294
            G ++A  N E K+++LFPRG  F   L G +                 T  GS M        C E   D    VRRGEA+++GG WFRV+  +       QP RA+APLSV    D   R+E
Sbjct:  179 GDVLALFNTEDKDKVLFPRGEPFFVELDGIINPXXXXXXXXXXXXMNNTEMGSLMTSQEKKMYCVETDSDPRSQVRRGEAIQIGGSWFRVSSAVKEGPLKDQPARATAPLSVVSRKDLSKRNE 301          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A7S3K250_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K250_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-7
Identity = 50/171 (29.24%), Postives = 79/171 (46.20%), Query Frame = 1
Query:    1 GGIIAADNKELKNQILFPRGPLFLTPLRGT-------MQTAPGSRMALCSEPPDDTVRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSEDRLALGFEAGPGQPALPLQEAWPGDEPPWTGTGA-----RHGCSKALRQLWRDVLADVPREEAERQ 477
            G +IA  +    +  LF RG  +L  L+         M+    + +   +E     +RRG+A+R+G RW+RV+  +  + S +QP RA  PLSV+ +A  D+ S +     F+       + LQ A   D+       A     RHG S  +R LW +  A VP +  + Q
Sbjct:  148 GQVIAIQHGTNHSISLFARGDNYLVQLQAKASDTFEIMEEDDSTIILQTTESCLPDLRRGDALRVGQRWYRVSSRV--NKSKNQPMRAKRPLSVSSNA--DMHSANVYCDPFD----NTQISLQAASMNDDDIQHNISANTFLTRHGISNDIRSLWLETAAAVPTDRIDLQ 310          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A448Z2M5_9STRA (TFA2_Winged_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2M5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.650e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1
Query:  136 PDDTVRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSEDRL 303
            P   +RRGEAV++GG WFRV+ D+ GH +  QP RA APLSV    D  L   +RL
Sbjct:  286 PTTQIRRGEAVQIGGTWFRVSSDVKGHKN--QPVRAKAPLSVVARKDIALSKNNRL 339          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A4D9CRI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRI8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.390e-7
Identity = 53/168 (31.55%), Postives = 72/168 (42.86%), Query Frame = 1
Query:   43 ILFPRGPLFLTPLRGTMQTAP-------GSRMALCSEPPDDTVRRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSEDRLALGFEAGPGQPALPLQEAWPGDEPPWTGTG-------ARHGCSKALRQL-WRDVLADVPREEAERQALMHSVGL 501
            + F RG  FL  L G+ +          G R+ +  +   + +RRGEAVR+GG WFRV  D+  +    Q  RA  P+SVT  A    R    +    E    + A  L E  P D  P  G          RHGC+  +R L W      VP +E E +A +    L
Sbjct:  116 VYFHRGEPFLVSLSGSGRRLRSREGEDGGGRVGISHDLRSE-LRRGEAVRVGGEWFRV--DILENRK-VQRLRAETPVSVTIGA--GRRKWPPVDFMDEKSGYKEAFSLTEGLPLDHSPLPGRDEEEDLPLVRHGCTSDVRDLLWSTTRQHVPSDEKELRARLQEAAL 277          
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Match: A0A7S3DTC3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTC3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.800e-5
Identity = 38/100 (38.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:  136 PDDTVRRGEAVRLGGRWFRVACDL-AGHASHSQPQRASAPLSVTRDADPDLRSEDRLALGFEAGPGQPALPLQEAWPGDEP-PWTGTGARHGCSKALRQL 429
            P   +RRGEA+++GG WFRV+  + AG +   QP RA APLSV    D   R+E     G+     Q  LP+      D+P P +G  A     KA  +L
Sbjct:  274 PCSQIRRGEAIQVGGEWFRVSSAVKAGVSLAEQPARAQAPLSVVSLTDLPKRNE---VDGYIRPLDQKTLPI------DKPLPTSGIKALQKAKKARERL 364          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16389.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JPC1_9PHAE1.420e-2838.22TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
D7FZN3_ECTSI9.400e-1845.83TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S3L736_9STRA7.780e-1037.93Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7EPK7_9STRA1.240e-835.77TFA2_Winged_2 domain-containing protein n=1 Tax=Fr... [more]
A0A7S3K250_9STRA1.320e-729.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A448Z2M5_9STRA3.650e-751.79TFA2_Winged_2 domain-containing protein n=1 Tax=Ps... [more]
A0A4D9CRI8_9STRA7.390e-731.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3DTC3_9STRA4.800e-538.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16389contigP-wetherbeei_contig16389:438..1366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008877668.1
Preferred nameGTF2E2
PFAMsTFIIE_beta
Model size519
Max annot lvl2759|Eukaryota
KEGG koko:K03137
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0001076,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005673,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Exons2
Evalue1.47e-20
EggNOG OGsCOG5174@1|root,KOG3095@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003750.1
Descriptiontranscription initiation from RNA polymerase II promoter
Cds size519
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.223217-CDS-P-wetherbeei_contig16389:437..6371683186085.223217-CDS-P-wetherbeei_contig16389:437..637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16389 438..637 +
1683186085.2328038-CDS-P-wetherbeei_contig16389:1047..13661683186085.2328038-CDS-P-wetherbeei_contig16389:1047..1366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16389 1048..1366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16389.1.1prot_P-wetherbeei_contig16389.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16389 438..1366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16389.1.1

>prot_P-wetherbeei_contig16389.1.1 ID=prot_P-wetherbeei_contig16389.1.1|Name=mRNA_P-wetherbeei_contig16389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
GGIIAADNKELKNQILFPRGPLFLTPLRGTMQTAPGSRMALCSEPPDDTV
RRGEAVRLGGRWFRVACDLAGHASHSQPQRASAPLSVTRDADPDLRSEDR
LALGFEAGPGQPALPLQEAWPGDEPPWTGTGARHGCSKALRQLWRDVLAD
VPREEAERQALMHSVGLVSELQV
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mRNA from alignment at P-wetherbeei_contig16389:438..1366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16389.1.1 ID=mRNA_P-wetherbeei_contig16389.1.1|Name=mRNA_P-wetherbeei_contig16389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=929bp|location=Sequence derived from alignment at P-wetherbeei_contig16389:438..1366+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCATCATCGCGGCCGACAACAAGGAGCTCAAGAACCAGATCCTCTT CCCGCGGGGGCCGCTCTTCCTGACGCCTTTGCGGGGCACCATGCAGACCG CCCCCGGCAGCCGCATGGCGCTGTGTTCCGAGCCGCCAGACGACACGGTG CGCCGCGGCGAGGCAGTGCGGCTCGGCGGCCGGTGGTTCCGCGTCGCATG GTGAGTAAAACTTGCGGCGTTCTCGTGTGTGCGGGGAGGAGGTAGAAGTG ATCGTCATTTTCTCCGGCAAGGGTGCGGCGTCGTGGTTTGAAGAGAAAGA TTGGAGGCAAGAAACGCCTGGTACTGTTGTCGAGGGAAGGCGAAGAGGTG TTTTCTTCCGTTTTCAGAACTCCTATTACTCTTCAGAACCCGCGTATCTC GCCTGGTGATGCGCTTGCTCTCGTGTTTTACCTCAAGTTGGCAATCTCCT GGCTGCTTTCCACTCATTTTCTGCATGTCCGCATTGTTGCCCGCGGCTTG CGGCTTGCCGTTTCTTGGTTGCTGCGCTAGCTGCGCGCGCCACCACTTGC ATTCCTCCGATTCTTTCCTTTTCTCCGCTGCTACCTCCCCTTCGCAAACT CCTGCCTCAGCGACCTAGCAGGGCACGCGAGCCACTCGCAGCCGCAGCGC GCGTCGGCGCCACTCTCCGTGACGCGCGACGCCGATCCGGACCTCCGCAG CGAGGACCGTTTAGCCTTGGGCTTCGAGGCAGGGCCGGGGCAGCCGGCGC TGCCGCTGCAGGAGGCGTGGCCGGGCGACGAGCCGCCGTGGACGGGAACG GGCGCGCGGCACGGCTGCTCCAAGGCTCTGCGGCAGCTATGGCGGGACGT GCTTGCGGACGTGCCGCGGGAGGAGGCAGAGCGGCAGGCGCTGATGCACA GCGTCGGGCTGGTCAGCGAGCTGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16389:438..1366+

>mRNA_P-wetherbeei_contig16389.1.1 ID=mRNA_P-wetherbeei_contig16389.1.1|Name=mRNA_P-wetherbeei_contig16389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig16389:438..1366+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCATCATCGCGGCCGACAACAAGGAGCTCAAGAACCAGATCCTCTT
CCCGCGGGGGCCGCTCTTCCTGACGCCTTTGCGGGGCACCATGCAGACCG
CCCCCGGCAGCCGCATGGCGCTGTGTTCCGAGCCGCCAGACGACACGGTG
CGCCGCGGCGAGGCAGTGCGGCTCGGCGGCCGGTGGTTCCGCGTCGCATG
CGACCTAGCAGGGCACGCGAGCCACTCGCAGCCGCAGCGCGCGTCGGCGC
CACTCTCCGTGACGCGCGACGCCGATCCGGACCTCCGCAGCGAGGACCGT
TTAGCCTTGGGCTTCGAGGCAGGGCCGGGGCAGCCGGCGCTGCCGCTGCA
GGAGGCGTGGCCGGGCGACGAGCCGCCGTGGACGGGAACGGGCGCGCGGC
ACGGCTGCTCCAAGGCTCTGCGGCAGCTATGGCGGGACGTGCTTGCGGAC
GTGCCGCGGGAGGAGGCAGAGCGGCAGGCGCTGATGCACAGCGTCGGGCT
GGTCAGCGAGCTGCAGGTG
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