prot_P-wetherbeei_contig9962.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig9962.1.1
Unique Nameprot_P-wetherbeei_contig9962.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length369
Homology
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BLAST of mRNA_P-wetherbeei_contig9962.1.1 vs. uniprot
Match: A0A835YRU3_9STRA (Nup133 N terminal like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.090e-19
Identity = 116/370 (31.35%), Postives = 150/370 (40.54%), Query Frame = 0 
Query:    4 QLVVSEAAHRRAAAALEALVTPVEGGLLQPGDAD-RTAEELTRTCYMYYSGGDALTHEGMRHLREARALAASRPGTEDVRRAIEDGVRALVSAAGWWRDSAALEPRGVLRRACAELRRLQVHPGAIQVCLACAENFPPSRQVPVGFGSCGVGVAAAAGDFLLRATLTPVGPRAGYKR------------RSPGAGMVTAWTPQPGGGSYGSYGG-SNGRDIA-WDRSLYHGRAAASEEERARFRDVCYTEALTTLEELLSPVRAIAGAGPVDGRDGSS-------------------------AVTPELRGAL-----LGASLSQAICSEDRAFHYRLYDLLREHDAETLTRLRTTFVEDYLXXXXXXLL 328
            QLVV   AH  A   L  LV   + GL   GDA+   A  L + CY+Y+S GD L HEG   L +A    A  PG+ D R   +  V  L  AA +WR   A  P G L+ ACA L RL+ + G  +VCLACA NF   R      G   +   A      L A     GPRA  +R            RS    +V   +   G     + GG S   D+  W+  LYHG +    + R    +  +   L  LE+L   VR  AGA   D R G S                         AV+  +  AL         +S  + S+D  +H RLY LL   D   L R+    +E +L      LL
Sbjct: 1091 QLVVGRGAHANAERLLAGLVG-AQSGL--GGDAEGHLARALRQECYLYFSQGDVLAHEGALALSQAEEKEAVDPGSVDARAESDCAVTLLTHAAAFWRGPRAAAPGGPLQLACARLARLRRYDGVGRVCLACAANFAGVRAAVERDGFREIFTIATVPANCLNAGARSSGPRARSRRSHFHNSCPQIIHRSVSDEVVGRPSWSAGADDLRTLGGWSPPPDVPRWELELYHGGSVGDAKGRDAAVEAVHGVLLGYLEDL---VRGDAGA---DIRPGESPEMPCQPAVPTANATPLPCPARFRAAVSKRVEAALRRRCDAEGLISNTLKSQDDVYHARLYALLLRRDRVLLLRVDGERLEPWLRANDADLL 1451
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9962.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRU3_9STRA2.090e-1931.35Nup133 N terminal like-domain-containing protein n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004870Nucleoporin, Nup155-likePANTHERPTHR10350NUCLEAR PORE COMPLEX PROTEIN NUP155coord: 2..356

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9962contigP-wetherbeei_contig9962:145..1251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9962.1.1mRNA_P-wetherbeei_contig9962.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig9962 143..1251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig9962.1.1 ID=prot_P-wetherbeei_contig9962.1.1|Name=mRNA_P-wetherbeei_contig9962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=369bp
MFWQLVVSEAAHRRAAAALEALVTPVEGGLLQPGDADRTAEELTRTCYMY
YSGGDALTHEGMRHLREARALAASRPGTEDVRRAIEDGVRALVSAAGWWR
DSAALEPRGVLRRACAELRRLQVHPGAIQVCLACAENFPPSRQVPVGFGS
CGVGVAAAAGDFLLRATLTPVGPRAGYKRRSPGAGMVTAWTPQPGGGSYG
SYGGSNGRDIAWDRSLYHGRAAASEEERARFRDVCYTEALTTLEELLSPV
RAIAGAGPVDGRDGSSAVTPELRGALLGASLSQAICSEDRAFHYRLYDLL
REHDAETLTRLRTTFVEDYLREADAELLAKFYATIGRHREASQLWASVAS
GTAATAPRRISAGPAGPTA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004870Nucleoporin_Nup155