prot_P-wetherbeei_contig993.2.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig993.2.2
Unique Nameprot_P-wetherbeei_contig993.2.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length86
Homology
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: K0T4V9_THAOC (Sm domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4V9_THAOC)

HSP 1 Score: 120 bits (302), Expect = 7.810e-34
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRG-VDGFRCLARLASRHC-------VLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSL 84
            KRSPSDFLK+ LGR VVV+LNSG DY+G   G    A + S++        VLACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNNGT L
Sbjct:   10 KRSPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNNGTCL 101          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.040e-33
Identity = 60/80 (75.00%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            KRSPSDFLKS LGRPV V+LNSG DYRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 92          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR)

HSP 1 Score: 116 bits (290), Expect = 1.780e-32
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            KRSPSDFLKS LGRPV VKLNSG++YRG+               LACLDGY+NIAMEQ EEYVDGQL+AKYGDCFIRGNN
Sbjct:    2 KRSPSDFLKSVLGRPVQVKLNSGIEYRGI---------------LACLDGYLNIAMEQTEEYVDGQLQAKYGDCFIRGNN 66          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0KWV0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWV0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.120e-32
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            KRSPSDFLKS LGRPV V+LNSG +YRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   53 KRSPSDFLKSVLGRPVKVRLNSGTEYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 117          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0FIP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIP0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 7.250e-32
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            KRSPSDFLK+ LGRPV V+LNSG DY+GV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   30 KRSPSDFLKAVLGRPVNVRLNSGTDYKGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 94          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7K7SXJ6_9TYRA (LSM6 protein (Fragment) n=1 Tax=Sapayoa aenigma TaxID=239371 RepID=A0A7K7SXJ6_9TYRA)

HSP 1 Score: 115 bits (287), Expect = 8.180e-32
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 85
            K++PSDFLK  +GRPVVVKLNSGVDYRGV               LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNG  LL
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGKFLL 74          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A2I0AH25_9ASPA (Putative small nuclear ribonucleoprotein F n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AH25_9ASPA)

HSP 1 Score: 115 bits (289), Expect = 8.390e-32
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    2 RSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTS 83
            ++P+DFLKS  GRPVVVKLNSGVDYRG      L+      C+LACLDGYMNIAMEQ EEYV+GQLK KYGD FIRGNNG S
Sbjct:   17 KTPADFLKSIRGRPVVVKLNSGVDYRGP-----LSAPFLGFCILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNGRS 93          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: B8C1P5_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1P5_THAPS)

HSP 1 Score: 114 bits (286), Expect = 9.270e-32
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            KRSPSDFLK+ LGRPV V+LN+G DYRGV               LACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNN
Sbjct:    2 KRSPSDFLKAVLGRPVNVRLNTGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNN 66          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: G1KCF6_ANOCA (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Anolis carolinensis TaxID=28377 RepID=G1KCF6_ANOCA)

HSP 1 Score: 115 bits (288), Expect = 1.060e-31
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 85
            K++PSDFLK  +GRPVVVKLNSGVDYRGV               LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNGT  L
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGTYTL 74          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.550e-31
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 80
            K +PSDFLK+ LGRPVVVKLNSGVDYRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGD FIRGNN
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNN 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0T4V9_THAOC7.810e-3468.48Sm domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S2UQ42_9STRA6.040e-3375.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J9X496_PHATR1.780e-3271.25Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S0KWV0_9STRA5.120e-3273.75Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S0FIP0_9STRA7.250e-3272.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7K7SXJ6_9TYRA8.180e-3268.24LSM6 protein (Fragment) n=1 Tax=Sapayoa aenigma Ta... [more]
A0A2I0AH25_9ASPA8.390e-3270.73Putative small nuclear ribonucleoprotein F n=1 Tax... [more]
B8C1P5_THAPS9.270e-3271.25Sm domain-containing protein (Fragment) n=1 Tax=Th... [more]
G1KCF6_ANOCA1.060e-3168.24LSM6 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A7S2IZG2_9EUKA1.550e-3173.75Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 6..82
e-value: 2.8E-5
score: 33.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 45..80
e-value: 1.6E-7
score: 30.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 2.5E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR11021:SF8SM-LIKE PROTEIN LSM36B-RELATEDcoord: 2..80
NoneNo IPR availableCDDcd01726LSm6coord: 3..80
e-value: 1.98286E-38
score: 120.319
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 2..80
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig993contigP-wetherbeei_contig993:2807..3174 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig993.2.2mRNA_P-wetherbeei_contig993.2.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig993 2807..3174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig993.2.2 ID=prot_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDG
YMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf